Wall clock time and date at job start Mon Mar 30 2020 03:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46840 * 2 1 4 4 H 1.08996 * 109.45194 * 304.96791 * 3 2 1 5 5 C 1.53040 * 109.45930 * 64.93388 * 3 2 1 6 6 C 1.53191 * 109.31303 * 181.38414 * 5 3 2 7 7 N 1.46928 * 108.77568 * 305.36278 * 6 5 3 8 8 C 1.34777 * 120.63251 * 233.58443 * 7 6 5 9 9 O 1.21689 * 120.00007 * 174.85206 * 8 7 6 10 10 C 1.46376 * 119.99658 * 354.85030 * 8 7 6 11 11 H 1.07996 * 120.00354 * 342.41148 * 10 8 7 12 12 C 1.40054 * 119.99889 * 162.41823 * 10 8 7 13 13 N 1.30665 * 119.99914 * 170.19045 * 12 10 8 14 14 Si 1.86802 * 119.99548 * 350.18598 * 12 10 8 15 15 H 1.48500 * 109.47186 * 84.77105 * 14 12 10 16 16 H 1.48499 * 109.46875 * 204.76370 * 14 12 10 17 17 H 1.48500 * 109.47399 * 324.76599 * 14 12 10 18 18 C 1.46927 * 118.73775 * 53.61053 * 7 6 5 19 19 C 1.53042 * 109.46116 * 184.99963 * 3 2 1 20 20 H 1.09008 * 109.50010 * 298.56617 * 19 3 2 21 21 N 1.46898 * 109.49994 * 58.66043 * 19 3 2 22 22 H 1.09003 * 109.46732 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47271 * 300.00023 * 1 2 3 24 24 H 1.08995 * 109.47311 * 60.00119 * 1 2 3 25 25 H 1.08993 * 109.47533 * 240.00457 * 2 1 3 26 26 H 1.08995 * 109.47311 * 119.99881 * 2 1 3 27 27 H 1.09000 * 109.50278 * 61.43544 * 5 3 2 28 28 H 1.08994 * 109.52503 * 301.35118 * 5 3 2 29 29 H 1.09000 * 109.59205 * 185.57409 * 6 5 3 30 30 H 1.09005 * 109.70455 * 65.22230 * 6 5 3 31 31 H 0.96999 * 119.99700 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.58697 * 186.60460 * 18 7 6 33 33 H 1.09000 * 109.58807 * 66.17656 * 18 7 6 34 34 H 1.00902 * 111.00526 * 179.83802 * 21 19 3 35 35 H 1.00897 * 110.99883 * 303.79976 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6055 1.9811 -0.8422 5 6 1.6334 2.1270 1.3071 6 6 2.1156 3.5809 1.2889 7 7 3.5606 3.5967 1.0235 8 6 4.4035 4.2472 1.8498 9 8 5.6053 4.1753 1.6729 10 6 3.8732 5.0402 2.9601 11 1 2.8363 5.3420 2.9613 12 6 4.7107 5.4076 4.0208 13 7 4.2970 6.2697 4.9114 14 14 6.4190 4.6652 4.1624 15 1 7.3675 5.4426 3.3250 16 1 6.8609 4.7070 5.5795 17 1 6.3866 3.2559 3.6953 18 6 4.0692 2.8904 -0.1602 19 6 3.5652 1.4442 -0.1258 20 1 4.0013 0.9272 0.7291 21 7 3.9557 0.7592 -1.3651 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5137 -0.8899 26 1 1.8933 -0.5138 0.8899 27 1 2.0877 1.6037 2.1484 28 1 0.5484 2.1048 1.4078 29 1 1.9165 4.0442 2.2553 30 1 1.5941 4.1313 0.5056 31 1 4.8769 6.5239 5.6462 32 1 5.1591 2.8978 -0.1499 33 1 3.7069 3.3822 -1.0629 34 1 4.9590 0.7494 -1.4723 35 1 3.5797 -0.1767 -1.3949 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616572924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:54 Heat of formation + Delta-G solvation = -82.564221 kcal Electronic energy + Delta-G solvation = -16422.911472 eV Core-core repulsion = 13839.647580 eV Total energy + Delta-G solvation = -2583.263892 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.84268 -38.81340 -35.53802 -35.05679 -34.46907 -31.11556 -30.09724 -28.20335 -26.23128 -23.73949 -22.76279 -21.46084 -20.48293 -18.69727 -17.98525 -17.13964 -16.57328 -16.15311 -15.99096 -15.56548 -15.00493 -14.85284 -14.61305 -14.42448 -13.84540 -13.78065 -13.44456 -13.04027 -12.89567 -12.79905 -12.66625 -12.57251 -12.00307 -11.73393 -11.52701 -11.24738 -11.20092 -11.10592 -10.07024 -9.70533 -9.31312 -8.81848 -7.02030 1.28531 1.32118 1.53568 2.04409 2.28753 2.60468 3.25466 3.56081 3.77873 3.82740 3.96746 4.22888 4.32856 4.40022 4.49120 4.64872 4.67250 4.76237 4.85760 4.90871 5.01383 5.03736 5.13826 5.20026 5.26848 5.28495 5.49461 5.54092 5.67246 5.92914 6.16138 6.23882 6.57072 6.60613 7.11302 7.94425 8.24109 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037588 B = 0.008123 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.736101 B = 3446.112922 C = 3843.676696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.072 4.072 4 H 0.080 0.920 5 C -0.122 4.122 6 C 0.113 3.887 7 N -0.630 5.630 8 C 0.549 3.451 9 O -0.649 6.649 10 C -0.551 4.551 11 H 0.086 0.914 12 C 0.072 3.928 13 N -0.847 5.847 14 Si 1.006 2.994 15 H -0.292 1.292 16 H -0.292 1.292 17 H -0.291 1.291 18 C 0.125 3.875 19 C 0.092 3.908 20 H 0.016 0.984 21 N -0.838 5.838 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.292 0.708 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.345 0.655 35 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 -12.514 -8.580 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.091 4.091 4 H 0.098 0.902 5 C -0.160 4.160 6 C -0.010 4.010 7 N -0.362 5.362 8 C 0.357 3.643 9 O -0.544 6.544 10 C -0.587 4.587 11 H 0.104 0.896 12 C -0.143 4.143 13 N -0.478 5.478 14 Si 0.838 3.162 15 H -0.220 1.220 16 H -0.221 1.221 17 H -0.218 1.218 18 C 0.001 3.999 19 C -0.021 4.021 20 H 0.034 0.966 21 N -0.371 5.371 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.158 0.842 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.489 -11.855 -8.887 16.601 hybrid contribution 1.381 -0.495 0.922 1.733 sum -6.107 -12.350 -7.966 15.914 Atomic orbital electron populations 1.21776 0.94525 1.02132 1.02197 1.21541 0.97137 0.94761 1.01833 1.21140 0.92742 0.97521 0.97704 0.90188 1.22000 1.02160 0.94403 0.97455 1.21722 0.79495 0.97680 1.02083 1.47655 1.07816 1.54070 1.26697 1.18342 0.84601 0.78691 0.82693 1.90183 1.17564 1.71280 1.75360 1.20950 0.99417 1.33269 1.05056 0.89628 1.26183 1.02418 0.92052 0.93693 1.69552 1.39661 1.26151 1.12423 0.84712 0.78620 0.79180 0.73654 1.21951 1.22106 1.21795 1.21273 0.98795 0.92179 0.87656 1.21495 0.96624 0.93291 0.90640 0.96627 1.58665 1.17457 1.24163 1.36791 0.91894 0.92491 0.92292 0.90690 0.92849 0.93257 0.88086 0.90362 0.91537 0.89729 0.92579 0.91599 0.84230 0.83130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.67 71.98 0.70 -1.69 16 2 C -0.12 -2.19 5.18 30.59 0.16 -2.03 16 3 C -0.07 -1.79 1.88 -10.77 -0.02 -1.81 16 4 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 5 C -0.12 -3.40 5.14 30.67 0.16 -3.24 16 6 C 0.11 4.04 6.28 86.36 0.54 4.59 16 7 N -0.63 -27.78 2.97 -823.99 -2.45 -30.23 16 8 C 0.55 30.26 7.21 86.36 0.62 30.89 16 9 O -0.65 -39.10 12.12 -4.31 -0.05 -39.16 16 10 C -0.55 -31.72 9.08 24.83 0.23 -31.50 16 11 H 0.09 4.90 6.42 -2.91 -0.02 4.88 16 12 C 0.07 4.19 5.52 85.31 0.47 4.66 16 13 N -0.85 -48.25 13.92 21.84 0.30 -47.94 16 14 Si 1.01 53.26 25.83 68.60 1.77 55.03 16 15 H -0.29 -16.12 7.11 99.48 0.71 -15.41 16 16 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 17 H -0.29 -16.33 6.82 99.48 0.68 -15.65 16 18 C 0.12 4.72 6.02 86.36 0.52 5.24 16 19 C 0.09 2.72 2.93 44.99 0.13 2.85 16 20 H 0.02 0.53 8.14 -2.38 -0.02 0.51 16 21 N -0.84 -19.27 9.21 -168.35 -1.55 -20.83 16 22 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.06 0.93 6.53 -2.39 -0.02 0.91 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 1.25 6.30 -2.39 -0.02 1.23 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 2.24 6.50 -2.39 -0.02 2.23 16 29 H 0.08 3.13 5.60 -2.39 -0.01 3.12 16 30 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.29 15.17 8.29 -92.71 -0.77 14.40 16 32 H 0.06 2.40 6.99 -2.39 -0.02 2.38 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.34 7.62 9.04 -89.69 -0.81 6.81 16 35 H 0.35 6.43 6.89 -89.70 -0.62 5.81 16 Total: -1.00 -67.65 271.71 1.17 -66.48 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -0.36 Total: 8.71 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 3.50 Total: 7.94 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -3.70 Total: -99.00 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.05 Total: -39.16 kcal Atomic # 14 Polarization: 53.26 SS G_CDS: 1.77 Total: 55.03 kcal Total: -67.65 1.17 -66.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616572924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.085 kcal (2) G-P(sol) polarization free energy of solvation -67.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds