Wall clock time and date at job start Mon Mar 30 2020 03:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47375 * 2 1 4 4 H 1.08999 * 109.45895 * 55.02217 * 3 2 1 5 5 C 1.53044 * 109.45732 * 295.06624 * 3 2 1 6 6 C 1.53191 * 109.31239 * 178.61612 * 5 3 2 7 7 N 1.46924 * 108.77525 * 54.63281 * 6 5 3 8 8 C 1.34776 * 120.62947 * 126.41590 * 7 6 5 9 9 O 1.21690 * 120.00104 * 354.80663 * 8 7 6 10 10 C 1.46373 * 120.00395 * 174.80675 * 8 7 6 11 11 H 1.08000 * 119.99568 * 342.42437 * 10 8 7 12 12 C 1.40049 * 120.00408 * 162.42486 * 10 8 7 13 13 N 1.30674 * 120.00041 * 170.18029 * 12 10 8 14 14 Si 1.86801 * 119.99905 * 350.18563 * 12 10 8 15 15 H 1.48501 * 109.47284 * 84.75978 * 14 12 10 16 16 H 1.48493 * 109.46907 * 204.76331 * 14 12 10 17 17 H 1.48501 * 109.46822 * 324.76080 * 14 12 10 18 18 C 1.46924 * 118.74066 * 306.38943 * 7 6 5 19 19 C 1.53042 * 109.46277 * 175.00096 * 3 2 1 20 20 H 1.08999 * 109.49558 * 61.42721 * 19 3 2 21 21 N 1.46902 * 109.49366 * 301.37009 * 19 3 2 22 22 H 1.09003 * 109.46649 * 300.00412 * 1 2 3 23 23 H 1.09004 * 109.46543 * 60.00115 * 1 2 3 24 24 H 1.08996 * 109.47342 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46786 * 239.99328 * 2 1 3 26 26 H 1.09004 * 109.46543 * 119.99885 * 2 1 3 27 27 H 1.08999 * 109.50240 * 298.56752 * 5 3 2 28 28 H 1.09004 * 109.49793 * 58.66673 * 5 3 2 29 29 H 1.09004 * 109.58782 * 294.84634 * 6 5 3 30 30 H 1.08996 * 109.70433 * 174.49702 * 6 5 3 31 31 H 0.96997 * 119.99556 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.59041 * 293.82467 * 18 7 6 33 33 H 1.09005 * 109.58712 * 173.39499 * 18 7 6 34 34 H 1.00894 * 110.99759 * 180.02562 * 21 19 3 35 35 H 1.00906 * 110.99655 * 303.94825 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6057 1.9812 0.8421 5 6 1.6337 2.1269 -1.3071 6 6 2.1159 3.5808 -1.2890 7 7 3.5609 3.5964 -1.0235 8 6 4.4039 4.2468 -1.8498 9 8 3.9839 4.7480 -2.8762 10 6 5.8245 4.3505 -1.5129 11 1 6.1539 4.1693 -0.5004 12 6 6.7566 4.6845 -2.5033 13 7 7.9893 4.9651 -2.1725 14 14 6.2377 4.7292 -4.2972 15 1 5.6399 6.0528 -4.6069 16 1 7.4248 4.5078 -5.1615 17 1 5.2360 3.6624 -4.5494 18 6 4.0694 2.8901 0.1602 19 6 3.5654 1.4440 0.1257 20 1 4.0014 0.9269 -0.7290 21 7 3.9558 0.7582 1.3648 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.0879 1.6035 -2.1485 28 1 0.5485 2.1048 -1.4073 29 1 1.5943 4.1290 -0.5044 30 1 1.9166 4.0462 -2.2542 31 1 8.6349 5.1961 -2.8585 32 1 3.7071 3.3819 1.0629 33 1 5.1594 2.8975 0.1499 34 1 4.9591 0.7465 1.4708 35 1 3.5127 1.1807 2.1669 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616572925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:57 Heat of formation + Delta-G solvation = -62.057309 kcal Electronic energy + Delta-G solvation = -16438.931280 eV Core-core repulsion = 13856.556634 eV Total energy + Delta-G solvation = -2582.374646 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.29315 -37.05001 -33.86924 -33.43994 -32.78649 -30.24689 -27.77465 -26.57649 -24.91549 -22.35527 -21.36081 -20.09308 -18.99660 -16.78710 -16.02523 -15.65063 -15.08079 -14.61318 -14.31775 -14.13781 -13.65813 -13.53270 -12.91052 -12.55091 -12.29063 -12.16691 -11.98038 -11.67120 -11.60608 -11.18341 -10.98954 -10.68842 -10.49390 -10.38115 -10.13365 -10.05258 -9.47459 -9.03310 -8.72783 -7.95370 -7.46397 -6.64815 -4.85442 3.43196 3.46262 3.68075 4.13218 4.20800 4.51069 4.77561 4.88519 5.04034 5.21526 5.39032 5.45467 5.52418 5.59430 5.67733 5.75577 5.83910 5.92608 6.04470 6.15961 6.21969 6.30911 6.35828 6.41035 6.44419 6.56572 6.72352 7.02534 7.29337 7.58327 7.64882 7.84836 8.28412 8.69333 9.11765 10.01605 10.36496 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.038242 B = 0.008177 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.994190 B = 3423.503290 C = 3816.792267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.076 4.076 4 H 0.063 0.937 5 C -0.128 4.128 6 C 0.116 3.884 7 N -0.628 5.628 8 C 0.555 3.445 9 O -0.616 6.616 10 C -0.535 4.535 11 H 0.088 0.912 12 C 0.103 3.897 13 N -0.829 5.829 14 Si 0.963 3.037 15 H -0.276 1.276 16 H -0.319 1.319 17 H -0.268 1.268 18 C 0.092 3.908 19 C 0.078 3.922 20 H 0.083 0.917 21 N -0.839 5.839 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.282 0.718 32 H 0.041 0.959 33 H 0.096 0.904 34 H 0.342 0.658 35 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.776 -8.245 6.054 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.095 4.095 4 H 0.082 0.918 5 C -0.167 4.167 6 C -0.008 4.008 7 N -0.363 5.363 8 C 0.364 3.636 9 O -0.508 6.508 10 C -0.571 4.571 11 H 0.106 0.894 12 C -0.115 4.115 13 N -0.458 5.458 14 Si 0.795 3.205 15 H -0.202 1.202 16 H -0.250 1.250 17 H -0.193 1.193 18 C -0.034 4.034 19 C -0.034 4.034 20 H 0.101 0.899 21 N -0.367 5.367 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.155 0.845 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.139 -8.589 5.230 14.280 hybrid contribution 0.320 1.013 -0.272 1.097 sum -9.819 -7.576 4.958 13.356 Atomic orbital electron populations 1.21849 0.96792 1.00940 1.01501 1.21465 0.94537 0.96329 1.02554 1.21133 0.94481 0.96093 0.97759 0.91837 1.22018 1.00348 0.96737 0.97598 1.21270 0.82638 0.95200 1.01686 1.47634 1.05483 1.55745 1.27409 1.18362 0.87095 0.76882 0.81244 1.90219 1.77778 1.54683 1.28136 1.20728 0.88897 1.48868 0.98578 0.89391 1.25726 0.93820 0.89205 1.02701 1.69561 1.04130 1.35305 1.36849 0.85298 0.74809 0.80935 0.79438 1.20228 1.24994 1.19295 1.22354 1.01383 0.91624 0.88057 1.21910 0.95288 0.92996 0.93207 0.89863 1.59040 1.13862 1.59368 1.04450 0.93166 0.92791 0.93314 0.92565 0.90765 0.91713 0.91367 0.93767 0.89622 0.90797 0.94072 0.88540 0.84538 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.67 37.16 0.36 -1.24 16 2 C -0.11 -1.34 5.31 -26.73 -0.14 -1.48 16 3 C -0.08 -1.02 1.81 -90.58 -0.16 -1.19 16 4 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 5 C -0.13 -1.92 5.14 -26.61 -0.14 -2.06 16 6 C 0.12 2.13 6.44 -3.71 -0.02 2.11 16 7 N -0.63 -13.61 2.97 -174.44 -0.52 -14.13 16 8 C 0.56 14.92 7.21 -12.99 -0.09 14.83 16 9 O -0.62 -18.08 12.12 5.20 0.06 -18.01 16 10 C -0.54 -15.08 9.08 -35.63 -0.32 -15.40 16 11 H 0.09 2.46 6.42 -52.49 -0.34 2.12 16 12 C 0.10 2.95 5.52 -17.37 -0.10 2.86 16 13 N -0.83 -23.53 13.92 55.55 0.77 -22.76 16 14 Si 0.96 25.56 25.83 -169.99 -4.39 21.17 16 15 H -0.28 -7.57 7.11 56.52 0.40 -7.17 16 16 H -0.32 -7.97 7.11 56.52 0.40 -7.57 16 17 H -0.27 -7.41 6.82 56.52 0.39 -7.03 16 18 C 0.09 1.65 5.85 -3.71 -0.02 1.63 16 19 C 0.08 1.17 2.86 -67.59 -0.19 0.98 16 20 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 21 N -0.84 -10.23 8.35 -4.56 -0.04 -10.27 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.56 6.53 -51.93 -0.34 0.22 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.90 7.41 -51.93 -0.38 0.52 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.07 0.87 6.50 -51.93 -0.34 0.54 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.75 6.99 -51.93 -0.36 1.39 16 31 H 0.28 7.37 8.29 -40.82 -0.34 7.04 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.91 5.60 -51.93 -0.29 1.62 16 34 H 0.34 3.98 9.04 -39.29 -0.36 3.62 16 35 H 0.33 3.60 8.98 -39.29 -0.35 3.24 16 LS Contribution 274.03 15.07 4.13 4.13 Total: -1.00 -31.15 274.03 -6.11 -37.26 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.29 Total: 1.58 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -0.84 Total: 1.03 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.22 Total: -47.15 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.06 Total: -18.01 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -4.39 Total: 21.17 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.15 -6.11 -37.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616572925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.800 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds