Wall clock time and date at job start Mon Mar 30 2020 03:50:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.52995 * 109.47375 * 2 1
4 4 H 1.08999 * 109.45895 * 55.02217 * 3 2 1
5 5 C 1.53044 * 109.45732 * 295.06624 * 3 2 1
6 6 C 1.53191 * 109.31239 * 178.61612 * 5 3 2
7 7 N 1.46924 * 108.77525 * 54.63281 * 6 5 3
8 8 C 1.34776 * 120.62947 * 126.41590 * 7 6 5
9 9 O 1.21690 * 120.00104 * 354.80663 * 8 7 6
10 10 C 1.46373 * 120.00395 * 174.80675 * 8 7 6
11 11 H 1.08000 * 119.99568 * 342.42437 * 10 8 7
12 12 C 1.40049 * 120.00408 * 162.42486 * 10 8 7
13 13 N 1.30674 * 120.00041 * 170.18029 * 12 10 8
14 14 Si 1.86801 * 119.99905 * 350.18563 * 12 10 8
15 15 H 1.48501 * 109.47284 * 84.75978 * 14 12 10
16 16 H 1.48493 * 109.46907 * 204.76331 * 14 12 10
17 17 H 1.48501 * 109.46822 * 324.76080 * 14 12 10
18 18 C 1.46924 * 118.74066 * 306.38943 * 7 6 5
19 19 C 1.53042 * 109.46277 * 175.00096 * 3 2 1
20 20 H 1.08999 * 109.49558 * 61.42721 * 19 3 2
21 21 N 1.46902 * 109.49366 * 301.37009 * 19 3 2
22 22 H 1.09003 * 109.46649 * 300.00412 * 1 2 3
23 23 H 1.09004 * 109.46543 * 60.00115 * 1 2 3
24 24 H 1.08996 * 109.47342 * 180.02562 * 1 2 3
25 25 H 1.08995 * 109.46786 * 239.99328 * 2 1 3
26 26 H 1.09004 * 109.46543 * 119.99885 * 2 1 3
27 27 H 1.08999 * 109.50240 * 298.56752 * 5 3 2
28 28 H 1.09004 * 109.49793 * 58.66673 * 5 3 2
29 29 H 1.09004 * 109.58782 * 294.84634 * 6 5 3
30 30 H 1.08996 * 109.70433 * 174.49702 * 6 5 3
31 31 H 0.96997 * 119.99556 * 179.97438 * 13 12 10
32 32 H 1.08993 * 109.59041 * 293.82467 * 18 7 6
33 33 H 1.09005 * 109.58712 * 173.39499 * 18 7 6
34 34 H 1.00894 * 110.99759 * 180.02562 * 21 19 3
35 35 H 1.00906 * 110.99655 * 303.94825 * 21 19 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6057 1.9812 0.8421
5 6 1.6337 2.1269 -1.3071
6 6 2.1159 3.5808 -1.2890
7 7 3.5609 3.5964 -1.0235
8 6 4.4039 4.2468 -1.8498
9 8 3.9839 4.7480 -2.8762
10 6 5.8245 4.3505 -1.5129
11 1 6.1539 4.1693 -0.5004
12 6 6.7566 4.6845 -2.5033
13 7 7.9893 4.9651 -2.1725
14 14 6.2377 4.7292 -4.2972
15 1 5.6399 6.0528 -4.6069
16 1 7.4248 4.5078 -5.1615
17 1 5.2360 3.6624 -4.5494
18 6 4.0694 2.8901 0.1602
19 6 3.5654 1.4440 0.1257
20 1 4.0014 0.9269 -0.7290
21 7 3.9558 0.7582 1.3648
22 1 -0.3633 0.5139 0.8900
23 1 -0.3632 0.5138 -0.8901
24 1 -0.3634 -1.0276 0.0005
25 1 1.8933 -0.5139 -0.8899
26 1 1.8933 -0.5138 0.8901
27 1 2.0879 1.6035 -2.1485
28 1 0.5485 2.1048 -1.4073
29 1 1.5943 4.1290 -0.5044
30 1 1.9166 4.0462 -2.2542
31 1 8.6349 5.1961 -2.8585
32 1 3.7071 3.3819 1.0629
33 1 5.1594 2.8975 0.1499
34 1 4.9591 0.7465 1.4708
35 1 3.5127 1.1807 2.1669
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000616572925.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:50:57
Heat of formation + Delta-G solvation = -62.057309 kcal
Electronic energy + Delta-G solvation = -16438.931280 eV
Core-core repulsion = 13856.556634 eV
Total energy + Delta-G solvation = -2582.374646 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.29315 -37.05001 -33.86924 -33.43994 -32.78649 -30.24689 -27.77465 -26.57649
-24.91549 -22.35527 -21.36081 -20.09308 -18.99660 -16.78710 -16.02523 -15.65063
-15.08079 -14.61318 -14.31775 -14.13781 -13.65813 -13.53270 -12.91052 -12.55091
-12.29063 -12.16691 -11.98038 -11.67120 -11.60608 -11.18341 -10.98954 -10.68842
-10.49390 -10.38115 -10.13365 -10.05258 -9.47459 -9.03310 -8.72783 -7.95370
-7.46397 -6.64815 -4.85442 3.43196 3.46262 3.68075 4.13218 4.20800
4.51069 4.77561 4.88519 5.04034 5.21526 5.39032 5.45467 5.52418
5.59430 5.67733 5.75577 5.83910 5.92608 6.04470 6.15961 6.21969
6.30911 6.35828 6.41035 6.44419 6.56572 6.72352 7.02534 7.29337
7.58327 7.64882 7.84836 8.28412 8.69333 9.11765 10.01605 10.36496
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.038242 B = 0.008177 C = 0.007334
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 731.994190 B = 3423.503290 C = 3816.792267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.111 4.111
3 C -0.076 4.076
4 H 0.063 0.937
5 C -0.128 4.128
6 C 0.116 3.884
7 N -0.628 5.628
8 C 0.555 3.445
9 O -0.616 6.616
10 C -0.535 4.535
11 H 0.088 0.912
12 C 0.103 3.897
13 N -0.829 5.829
14 Si 0.963 3.037
15 H -0.276 1.276
16 H -0.319 1.319
17 H -0.268 1.268
18 C 0.092 3.908
19 C 0.078 3.922
20 H 0.083 0.917
21 N -0.839 5.839
22 H 0.049 0.951
23 H 0.053 0.947
24 H 0.048 0.952
25 H 0.056 0.944
26 H 0.074 0.926
27 H 0.064 0.936
28 H 0.068 0.932
29 H 0.044 0.956
30 H 0.085 0.915
31 H 0.282 0.718
32 H 0.041 0.959
33 H 0.096 0.904
34 H 0.342 0.658
35 H 0.334 0.666
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.776 -8.245 6.054 14.149
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.149 4.149
3 C -0.095 4.095
4 H 0.082 0.918
5 C -0.167 4.167
6 C -0.008 4.008
7 N -0.363 5.363
8 C 0.364 3.636
9 O -0.508 6.508
10 C -0.571 4.571
11 H 0.106 0.894
12 C -0.115 4.115
13 N -0.458 5.458
14 Si 0.795 3.205
15 H -0.202 1.202
16 H -0.250 1.250
17 H -0.193 1.193
18 C -0.034 4.034
19 C -0.034 4.034
20 H 0.101 0.899
21 N -0.367 5.367
22 H 0.068 0.932
23 H 0.072 0.928
24 H 0.067 0.933
25 H 0.074 0.926
26 H 0.092 0.908
27 H 0.083 0.917
28 H 0.086 0.914
29 H 0.062 0.938
30 H 0.104 0.896
31 H 0.092 0.908
32 H 0.059 0.941
33 H 0.115 0.885
34 H 0.155 0.845
35 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -10.139 -8.589 5.230 14.280
hybrid contribution 0.320 1.013 -0.272 1.097
sum -9.819 -7.576 4.958 13.356
Atomic orbital electron populations
1.21849 0.96792 1.00940 1.01501 1.21465 0.94537 0.96329 1.02554
1.21133 0.94481 0.96093 0.97759 0.91837 1.22018 1.00348 0.96737
0.97598 1.21270 0.82638 0.95200 1.01686 1.47634 1.05483 1.55745
1.27409 1.18362 0.87095 0.76882 0.81244 1.90219 1.77778 1.54683
1.28136 1.20728 0.88897 1.48868 0.98578 0.89391 1.25726 0.93820
0.89205 1.02701 1.69561 1.04130 1.35305 1.36849 0.85298 0.74809
0.80935 0.79438 1.20228 1.24994 1.19295 1.22354 1.01383 0.91624
0.88057 1.21910 0.95288 0.92996 0.93207 0.89863 1.59040 1.13862
1.59368 1.04450 0.93166 0.92791 0.93314 0.92565 0.90765 0.91713
0.91367 0.93767 0.89622 0.90797 0.94072 0.88540 0.84538 0.85388
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.60 9.67 37.16 0.36 -1.24 16
2 C -0.11 -1.34 5.31 -26.73 -0.14 -1.48 16
3 C -0.08 -1.02 1.81 -90.58 -0.16 -1.19 16
4 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16
5 C -0.13 -1.92 5.14 -26.61 -0.14 -2.06 16
6 C 0.12 2.13 6.44 -3.71 -0.02 2.11 16
7 N -0.63 -13.61 2.97 -174.44 -0.52 -14.13 16
8 C 0.56 14.92 7.21 -12.99 -0.09 14.83 16
9 O -0.62 -18.08 12.12 5.20 0.06 -18.01 16
10 C -0.54 -15.08 9.08 -35.63 -0.32 -15.40 16
11 H 0.09 2.46 6.42 -52.49 -0.34 2.12 16
12 C 0.10 2.95 5.52 -17.37 -0.10 2.86 16
13 N -0.83 -23.53 13.92 55.55 0.77 -22.76 16
14 Si 0.96 25.56 25.83 -169.99 -4.39 21.17 16
15 H -0.28 -7.57 7.11 56.52 0.40 -7.17 16
16 H -0.32 -7.97 7.11 56.52 0.40 -7.57 16
17 H -0.27 -7.41 6.82 56.52 0.39 -7.03 16
18 C 0.09 1.65 5.85 -3.71 -0.02 1.63 16
19 C 0.08 1.17 2.86 -67.59 -0.19 0.98 16
20 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16
21 N -0.84 -10.23 8.35 -4.56 -0.04 -10.27 16
22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16
23 H 0.05 0.56 6.53 -51.93 -0.34 0.22 16
24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
26 H 0.07 0.90 7.41 -51.93 -0.38 0.52 16
27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
28 H 0.07 0.87 6.50 -51.93 -0.34 0.54 16
29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
30 H 0.09 1.75 6.99 -51.93 -0.36 1.39 16
31 H 0.28 7.37 8.29 -40.82 -0.34 7.04 16
32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
33 H 0.10 1.91 5.60 -51.93 -0.29 1.62 16
34 H 0.34 3.98 9.04 -39.29 -0.36 3.62 16
35 H 0.33 3.60 8.98 -39.29 -0.35 3.24 16
LS Contribution 274.03 15.07 4.13 4.13
Total: -1.00 -31.15 274.03 -6.11 -37.26
By element:
Atomic # 1 Polarization: 6.87 SS G_CDS: -5.29 Total: 1.58 kcal
Atomic # 6 Polarization: 1.87 SS G_CDS: -0.84 Total: 1.03 kcal
Atomic # 7 Polarization: -47.37 SS G_CDS: 0.22 Total: -47.15 kcal
Atomic # 8 Polarization: -18.08 SS G_CDS: 0.06 Total: -18.01 kcal
Atomic # 14 Polarization: 25.56 SS G_CDS: -4.39 Total: 21.17 kcal
Total LS contribution 4.13 Total: 4.13 kcal
Total: -31.15 -6.11 -37.26 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000616572925.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.800 kcal
(2) G-P(sol) polarization free energy of solvation -31.147 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.948 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.257 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.057 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds