Wall clock time and date at job start Mon Mar 30 2020 03:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47375 * 2 1 4 4 H 1.08999 * 109.45895 * 55.02217 * 3 2 1 5 5 C 1.53044 * 109.45732 * 295.06624 * 3 2 1 6 6 C 1.53191 * 109.31239 * 178.61612 * 5 3 2 7 7 N 1.46924 * 108.77525 * 54.63281 * 6 5 3 8 8 C 1.34776 * 120.62947 * 126.41590 * 7 6 5 9 9 O 1.21690 * 120.00104 * 354.80663 * 8 7 6 10 10 C 1.46373 * 120.00395 * 174.80675 * 8 7 6 11 11 H 1.08000 * 119.99568 * 342.42437 * 10 8 7 12 12 C 1.40049 * 120.00408 * 162.42486 * 10 8 7 13 13 N 1.30674 * 120.00041 * 170.18029 * 12 10 8 14 14 Si 1.86801 * 119.99905 * 350.18563 * 12 10 8 15 15 H 1.48501 * 109.47284 * 84.75978 * 14 12 10 16 16 H 1.48493 * 109.46907 * 204.76331 * 14 12 10 17 17 H 1.48501 * 109.46822 * 324.76080 * 14 12 10 18 18 C 1.46924 * 118.74066 * 306.38943 * 7 6 5 19 19 C 1.53042 * 109.46277 * 175.00096 * 3 2 1 20 20 H 1.08999 * 109.49558 * 61.42721 * 19 3 2 21 21 N 1.46902 * 109.49366 * 301.37009 * 19 3 2 22 22 H 1.09003 * 109.46649 * 300.00412 * 1 2 3 23 23 H 1.09004 * 109.46543 * 60.00115 * 1 2 3 24 24 H 1.08996 * 109.47342 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46786 * 239.99328 * 2 1 3 26 26 H 1.09004 * 109.46543 * 119.99885 * 2 1 3 27 27 H 1.08999 * 109.50240 * 298.56752 * 5 3 2 28 28 H 1.09004 * 109.49793 * 58.66673 * 5 3 2 29 29 H 1.09004 * 109.58782 * 294.84634 * 6 5 3 30 30 H 1.08996 * 109.70433 * 174.49702 * 6 5 3 31 31 H 0.96997 * 119.99556 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.59041 * 293.82467 * 18 7 6 33 33 H 1.09005 * 109.58712 * 173.39499 * 18 7 6 34 34 H 1.00894 * 110.99759 * 180.02562 * 21 19 3 35 35 H 1.00906 * 110.99655 * 303.94825 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6057 1.9812 0.8421 5 6 1.6337 2.1269 -1.3071 6 6 2.1159 3.5808 -1.2890 7 7 3.5609 3.5964 -1.0235 8 6 4.4039 4.2468 -1.8498 9 8 3.9839 4.7480 -2.8762 10 6 5.8245 4.3505 -1.5129 11 1 6.1539 4.1693 -0.5004 12 6 6.7566 4.6845 -2.5033 13 7 7.9893 4.9651 -2.1725 14 14 6.2377 4.7292 -4.2972 15 1 5.6399 6.0528 -4.6069 16 1 7.4248 4.5078 -5.1615 17 1 5.2360 3.6624 -4.5494 18 6 4.0694 2.8901 0.1602 19 6 3.5654 1.4440 0.1257 20 1 4.0014 0.9269 -0.7290 21 7 3.9558 0.7582 1.3648 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.0879 1.6035 -2.1485 28 1 0.5485 2.1048 -1.4073 29 1 1.5943 4.1290 -0.5044 30 1 1.9166 4.0462 -2.2542 31 1 8.6349 5.1961 -2.8585 32 1 3.7071 3.3819 1.0629 33 1 5.1594 2.8975 0.1499 34 1 4.9591 0.7465 1.4708 35 1 3.5127 1.1807 2.1669 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616572925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:56 Heat of formation + Delta-G solvation = -85.006642 kcal Electronic energy + Delta-G solvation = -16439.926438 eV Core-core repulsion = 13856.556634 eV Total energy + Delta-G solvation = -2583.369804 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.84752 -38.79626 -35.36776 -35.08077 -34.53506 -31.59970 -29.06935 -28.53658 -26.24824 -23.83753 -22.56457 -21.49185 -20.62675 -18.76199 -17.99065 -16.95344 -16.74491 -16.07901 -15.88625 -15.47705 -14.94236 -14.82267 -14.53128 -14.33184 -14.03854 -13.71245 -13.58803 -13.13633 -12.84430 -12.77768 -12.52154 -12.36872 -11.98326 -11.73261 -11.48138 -11.27840 -11.26103 -11.08848 -10.14003 -9.89257 -9.11243 -8.83588 -7.03964 1.28132 1.31783 1.53130 2.03670 2.28454 2.62657 3.24302 3.61731 3.76129 3.90275 4.07554 4.17597 4.32181 4.41108 4.53540 4.64163 4.70826 4.76395 4.85600 4.92233 4.94743 5.06949 5.16636 5.22445 5.28421 5.35071 5.56224 5.63748 5.64340 5.92312 6.18988 6.23509 6.58141 6.64880 7.09425 7.93658 8.22428 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.038242 B = 0.008177 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.994190 B = 3423.503290 C = 3816.792267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 C -0.069 4.069 4 H 0.080 0.920 5 C -0.119 4.119 6 C 0.110 3.890 7 N -0.628 5.628 8 C 0.549 3.451 9 O -0.648 6.648 10 C -0.553 4.553 11 H 0.082 0.918 12 C 0.072 3.928 13 N -0.848 5.848 14 Si 1.006 2.994 15 H -0.292 1.292 16 H -0.292 1.292 17 H -0.290 1.290 18 C 0.090 3.910 19 C 0.091 3.909 20 H 0.058 0.942 21 N -0.828 5.828 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.292 0.708 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.347 0.653 35 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.232 -9.315 7.186 16.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.088 4.088 4 H 0.098 0.902 5 C -0.158 4.158 6 C -0.012 4.012 7 N -0.361 5.361 8 C 0.356 3.644 9 O -0.542 6.542 10 C -0.589 4.589 11 H 0.100 0.900 12 C -0.144 4.144 13 N -0.478 5.478 14 Si 0.838 3.162 15 H -0.219 1.219 16 H -0.221 1.221 17 H -0.217 1.217 18 C -0.035 4.035 19 C -0.022 4.022 20 H 0.076 0.924 21 N -0.357 5.357 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.160 0.840 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.590 -9.689 6.407 16.409 hybrid contribution 0.732 1.335 -0.533 1.614 sum -10.857 -8.354 5.874 14.905 Atomic orbital electron populations 1.21823 0.95145 1.01853 1.01962 1.21389 0.95885 0.94772 1.02155 1.21108 0.93115 0.97322 0.97294 0.90208 1.21959 1.01910 0.94037 0.97846 1.21506 0.80706 0.97805 1.01201 1.47629 1.06599 1.54476 1.27404 1.18327 0.87433 0.77084 0.81559 1.90188 1.78430 1.56028 1.29531 1.20934 0.90009 1.49431 0.98496 0.90000 1.26191 0.94115 0.89428 1.04637 1.69556 1.04482 1.35907 1.37905 0.84708 0.74648 0.79065 0.77778 1.21879 1.22145 1.21659 1.22568 1.00185 0.93524 0.87262 1.21681 0.96367 0.90513 0.93679 0.92414 1.59004 1.14432 1.58400 1.03885 0.92180 0.92791 0.92308 0.93700 0.90470 0.93678 0.88371 0.91306 0.92141 0.89738 0.91916 0.90894 0.84045 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.67 71.98 0.70 -1.88 16 2 C -0.10 -2.21 5.31 30.60 0.16 -2.04 16 3 C -0.07 -1.68 1.81 -10.77 -0.02 -1.70 16 4 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 5 C -0.12 -3.33 5.14 30.67 0.16 -3.17 16 6 C 0.11 3.93 6.44 86.36 0.56 4.49 16 7 N -0.63 -27.05 2.97 -824.01 -2.45 -29.50 16 8 C 0.55 29.94 7.21 86.36 0.62 30.57 16 9 O -0.65 -38.67 12.12 -4.32 -0.05 -38.72 16 10 C -0.55 -31.71 9.08 24.83 0.23 -31.48 16 11 H 0.08 4.69 6.42 -2.91 -0.02 4.67 16 12 C 0.07 4.16 5.52 85.30 0.47 4.63 16 13 N -0.85 -48.23 13.92 21.84 0.30 -47.93 16 14 Si 1.01 53.19 25.83 68.60 1.77 54.96 16 15 H -0.29 -16.03 7.11 99.48 0.71 -15.32 16 16 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 17 H -0.29 -16.25 6.82 99.48 0.68 -15.57 16 18 C 0.09 3.14 5.85 86.36 0.51 3.64 16 19 C 0.09 2.57 2.86 44.99 0.13 2.70 16 20 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 21 N -0.83 -18.24 8.35 -168.35 -1.41 -19.65 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.05 0.93 6.53 -2.39 -0.02 0.91 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 1.61 7.41 -2.39 -0.02 1.60 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.10 2.19 6.50 -2.38 -0.02 2.18 16 29 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.06 2.47 6.99 -2.39 -0.02 2.45 16 31 H 0.29 15.16 8.29 -92.71 -0.77 14.40 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 2.90 5.60 -2.38 -0.01 2.89 16 34 H 0.35 7.44 9.04 -89.70 -0.81 6.63 16 35 H 0.35 6.33 8.98 -89.69 -0.81 5.52 16 Total: -1.00 -67.17 274.03 1.13 -66.04 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -0.55 Total: 9.03 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 3.51 Total: 5.76 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -3.55 Total: -97.08 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.05 Total: -38.72 kcal Atomic # 14 Polarization: 53.19 SS G_CDS: 1.77 Total: 54.96 kcal Total: -67.17 1.13 -66.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616572925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.964 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds