Wall clock time and date at job start Mon Mar 30 2020 03:50:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.52995 * 109.47375 * 2 1
4 4 H 1.08999 * 109.45895 * 55.02217 * 3 2 1
5 5 C 1.53044 * 109.45732 * 295.06624 * 3 2 1
6 6 C 1.53191 * 109.31239 * 178.61612 * 5 3 2
7 7 N 1.46924 * 108.77525 * 54.63281 * 6 5 3
8 8 C 1.34776 * 120.62947 * 126.41590 * 7 6 5
9 9 O 1.21690 * 120.00104 * 354.80663 * 8 7 6
10 10 C 1.46373 * 120.00395 * 174.80675 * 8 7 6
11 11 H 1.08000 * 119.99568 * 342.42437 * 10 8 7
12 12 C 1.40049 * 120.00408 * 162.42486 * 10 8 7
13 13 N 1.30674 * 120.00041 * 170.18029 * 12 10 8
14 14 Si 1.86801 * 119.99905 * 350.18563 * 12 10 8
15 15 H 1.48501 * 109.47284 * 84.75978 * 14 12 10
16 16 H 1.48493 * 109.46907 * 204.76331 * 14 12 10
17 17 H 1.48501 * 109.46822 * 324.76080 * 14 12 10
18 18 C 1.46924 * 118.74066 * 306.38943 * 7 6 5
19 19 C 1.53042 * 109.46277 * 175.00096 * 3 2 1
20 20 H 1.08999 * 109.49558 * 61.42721 * 19 3 2
21 21 N 1.46902 * 109.49366 * 301.37009 * 19 3 2
22 22 H 1.09003 * 109.46649 * 300.00412 * 1 2 3
23 23 H 1.09004 * 109.46543 * 60.00115 * 1 2 3
24 24 H 1.08996 * 109.47342 * 180.02562 * 1 2 3
25 25 H 1.08995 * 109.46786 * 239.99328 * 2 1 3
26 26 H 1.09004 * 109.46543 * 119.99885 * 2 1 3
27 27 H 1.08999 * 109.50240 * 298.56752 * 5 3 2
28 28 H 1.09004 * 109.49793 * 58.66673 * 5 3 2
29 29 H 1.09004 * 109.58782 * 294.84634 * 6 5 3
30 30 H 1.08996 * 109.70433 * 174.49702 * 6 5 3
31 31 H 0.96997 * 119.99556 * 179.97438 * 13 12 10
32 32 H 1.08993 * 109.59041 * 293.82467 * 18 7 6
33 33 H 1.09005 * 109.58712 * 173.39499 * 18 7 6
34 34 H 1.00894 * 110.99759 * 180.02562 * 21 19 3
35 35 H 1.00906 * 110.99655 * 303.94825 * 21 19 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6057 1.9812 0.8421
5 6 1.6337 2.1269 -1.3071
6 6 2.1159 3.5808 -1.2890
7 7 3.5609 3.5964 -1.0235
8 6 4.4039 4.2468 -1.8498
9 8 3.9839 4.7480 -2.8762
10 6 5.8245 4.3505 -1.5129
11 1 6.1539 4.1693 -0.5004
12 6 6.7566 4.6845 -2.5033
13 7 7.9893 4.9651 -2.1725
14 14 6.2377 4.7292 -4.2972
15 1 5.6399 6.0528 -4.6069
16 1 7.4248 4.5078 -5.1615
17 1 5.2360 3.6624 -4.5494
18 6 4.0694 2.8901 0.1602
19 6 3.5654 1.4440 0.1257
20 1 4.0014 0.9269 -0.7290
21 7 3.9558 0.7582 1.3648
22 1 -0.3633 0.5139 0.8900
23 1 -0.3632 0.5138 -0.8901
24 1 -0.3634 -1.0276 0.0005
25 1 1.8933 -0.5139 -0.8899
26 1 1.8933 -0.5138 0.8901
27 1 2.0879 1.6035 -2.1485
28 1 0.5485 2.1048 -1.4073
29 1 1.5943 4.1290 -0.5044
30 1 1.9166 4.0462 -2.2542
31 1 8.6349 5.1961 -2.8585
32 1 3.7071 3.3819 1.0629
33 1 5.1594 2.8975 0.1499
34 1 4.9591 0.7465 1.4708
35 1 3.5127 1.1807 2.1669
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000616572925.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:50:56
Heat of formation + Delta-G solvation = -85.006642 kcal
Electronic energy + Delta-G solvation = -16439.926438 eV
Core-core repulsion = 13856.556634 eV
Total energy + Delta-G solvation = -2583.369804 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.84752 -38.79626 -35.36776 -35.08077 -34.53506 -31.59970 -29.06935 -28.53658
-26.24824 -23.83753 -22.56457 -21.49185 -20.62675 -18.76199 -17.99065 -16.95344
-16.74491 -16.07901 -15.88625 -15.47705 -14.94236 -14.82267 -14.53128 -14.33184
-14.03854 -13.71245 -13.58803 -13.13633 -12.84430 -12.77768 -12.52154 -12.36872
-11.98326 -11.73261 -11.48138 -11.27840 -11.26103 -11.08848 -10.14003 -9.89257
-9.11243 -8.83588 -7.03964 1.28132 1.31783 1.53130 2.03670 2.28454
2.62657 3.24302 3.61731 3.76129 3.90275 4.07554 4.17597 4.32181
4.41108 4.53540 4.64163 4.70826 4.76395 4.85600 4.92233 4.94743
5.06949 5.16636 5.22445 5.28421 5.35071 5.56224 5.63748 5.64340
5.92312 6.18988 6.23509 6.58141 6.64880 7.09425 7.93658 8.22428
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.038242 B = 0.008177 C = 0.007334
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 731.994190 B = 3423.503290 C = 3816.792267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.104 4.104
3 C -0.069 4.069
4 H 0.080 0.920
5 C -0.119 4.119
6 C 0.110 3.890
7 N -0.628 5.628
8 C 0.549 3.451
9 O -0.648 6.648
10 C -0.553 4.553
11 H 0.082 0.918
12 C 0.072 3.928
13 N -0.848 5.848
14 Si 1.006 2.994
15 H -0.292 1.292
16 H -0.292 1.292
17 H -0.290 1.290
18 C 0.090 3.910
19 C 0.091 3.909
20 H 0.058 0.942
21 N -0.828 5.828
22 H 0.059 0.941
23 H 0.053 0.947
24 H 0.058 0.942
25 H 0.044 0.956
26 H 0.077 0.923
27 H 0.044 0.956
28 H 0.098 0.902
29 H 0.069 0.931
30 H 0.060 0.940
31 H 0.292 0.708
32 H 0.063 0.937
33 H 0.073 0.927
34 H 0.347 0.653
35 H 0.348 0.652
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.232 -9.315 7.186 16.266
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.142 4.142
3 C -0.088 4.088
4 H 0.098 0.902
5 C -0.158 4.158
6 C -0.012 4.012
7 N -0.361 5.361
8 C 0.356 3.644
9 O -0.542 6.542
10 C -0.589 4.589
11 H 0.100 0.900
12 C -0.144 4.144
13 N -0.478 5.478
14 Si 0.838 3.162
15 H -0.219 1.219
16 H -0.221 1.221
17 H -0.217 1.217
18 C -0.035 4.035
19 C -0.022 4.022
20 H 0.076 0.924
21 N -0.357 5.357
22 H 0.078 0.922
23 H 0.072 0.928
24 H 0.077 0.923
25 H 0.063 0.937
26 H 0.095 0.905
27 H 0.063 0.937
28 H 0.116 0.884
29 H 0.087 0.913
30 H 0.079 0.921
31 H 0.103 0.897
32 H 0.081 0.919
33 H 0.091 0.909
34 H 0.160 0.840
35 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -11.590 -9.689 6.407 16.409
hybrid contribution 0.732 1.335 -0.533 1.614
sum -10.857 -8.354 5.874 14.905
Atomic orbital electron populations
1.21823 0.95145 1.01853 1.01962 1.21389 0.95885 0.94772 1.02155
1.21108 0.93115 0.97322 0.97294 0.90208 1.21959 1.01910 0.94037
0.97846 1.21506 0.80706 0.97805 1.01201 1.47629 1.06599 1.54476
1.27404 1.18327 0.87433 0.77084 0.81559 1.90188 1.78430 1.56028
1.29531 1.20934 0.90009 1.49431 0.98496 0.90000 1.26191 0.94115
0.89428 1.04637 1.69556 1.04482 1.35907 1.37905 0.84708 0.74648
0.79065 0.77778 1.21879 1.22145 1.21659 1.22568 1.00185 0.93524
0.87262 1.21681 0.96367 0.90513 0.93679 0.92414 1.59004 1.14432
1.58400 1.03885 0.92180 0.92791 0.92308 0.93700 0.90470 0.93678
0.88371 0.91306 0.92141 0.89738 0.91916 0.90894 0.84045 0.83882
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.58 9.67 71.98 0.70 -1.88 16
2 C -0.10 -2.21 5.31 30.60 0.16 -2.04 16
3 C -0.07 -1.68 1.81 -10.77 -0.02 -1.70 16
4 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16
5 C -0.12 -3.33 5.14 30.67 0.16 -3.17 16
6 C 0.11 3.93 6.44 86.36 0.56 4.49 16
7 N -0.63 -27.05 2.97 -824.01 -2.45 -29.50 16
8 C 0.55 29.94 7.21 86.36 0.62 30.57 16
9 O -0.65 -38.67 12.12 -4.32 -0.05 -38.72 16
10 C -0.55 -31.71 9.08 24.83 0.23 -31.48 16
11 H 0.08 4.69 6.42 -2.91 -0.02 4.67 16
12 C 0.07 4.16 5.52 85.30 0.47 4.63 16
13 N -0.85 -48.23 13.92 21.84 0.30 -47.93 16
14 Si 1.01 53.19 25.83 68.60 1.77 54.96 16
15 H -0.29 -16.03 7.11 99.48 0.71 -15.32 16
16 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16
17 H -0.29 -16.25 6.82 99.48 0.68 -15.57 16
18 C 0.09 3.14 5.85 86.36 0.51 3.64 16
19 C 0.09 2.57 2.86 44.99 0.13 2.70 16
20 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
21 N -0.83 -18.24 8.35 -168.35 -1.41 -19.65 16
22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
23 H 0.05 0.93 6.53 -2.39 -0.02 0.91 16
24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
25 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16
26 H 0.08 1.61 7.41 -2.39 -0.02 1.60 16
27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
28 H 0.10 2.19 6.50 -2.38 -0.02 2.18 16
29 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16
30 H 0.06 2.47 6.99 -2.39 -0.02 2.45 16
31 H 0.29 15.16 8.29 -92.71 -0.77 14.40 16
32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
33 H 0.07 2.90 5.60 -2.38 -0.01 2.89 16
34 H 0.35 7.44 9.04 -89.70 -0.81 6.63 16
35 H 0.35 6.33 8.98 -89.69 -0.81 5.52 16
Total: -1.00 -67.17 274.03 1.13 -66.04
By element:
Atomic # 1 Polarization: 9.58 SS G_CDS: -0.55 Total: 9.03 kcal
Atomic # 6 Polarization: 2.25 SS G_CDS: 3.51 Total: 5.76 kcal
Atomic # 7 Polarization: -93.53 SS G_CDS: -3.55 Total: -97.08 kcal
Atomic # 8 Polarization: -38.67 SS G_CDS: -0.05 Total: -38.72 kcal
Atomic # 14 Polarization: 53.19 SS G_CDS: 1.77 Total: 54.96 kcal
Total: -67.17 1.13 -66.04 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000616572925.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.964 kcal
(2) G-P(sol) polarization free energy of solvation -67.172 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.136 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.043 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.007 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds