Wall clock time and date at job start Mon Mar 30 2020 03:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 109.46913 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99588 * 2 1 3 5 5 C 1.50709 * 109.46995 * 65.00133 * 4 2 1 6 6 O 1.21282 * 119.99515 * 0.02562 * 5 4 2 7 7 N 1.34771 * 119.99835 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99760 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47120 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00164 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00234 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00326 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99927 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46998 * 90.00232 * 13 11 9 15 15 H 1.48500 * 109.47396 * 210.00324 * 13 11 9 16 16 H 1.48501 * 109.47329 * 330.00417 * 13 11 9 17 17 C 1.53003 * 109.47107 * 119.99466 * 2 1 3 18 18 C 1.53001 * 117.51964 * 231.28841 * 17 2 1 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 2 20 20 H 1.08996 * 109.47501 * 299.99931 * 1 2 3 21 21 H 1.09004 * 109.47169 * 60.00690 * 1 2 3 22 22 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 23 23 H 1.00894 * 111.00000 * 56.03965 * 3 2 1 24 24 H 1.00901 * 111.00027 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47570 * 184.99686 * 4 2 1 26 26 H 1.08999 * 109.47120 * 305.00120 * 4 2 1 27 27 H 0.97000 * 120.00258 * 0.02562 * 7 5 4 28 28 H 1.08996 * 109.47468 * 300.00207 * 8 7 5 29 29 H 1.08999 * 109.46869 * 60.00361 * 8 7 5 30 30 H 0.97003 * 119.99988 * 179.97438 * 12 11 9 31 31 H 1.09002 * 115.54973 * 85.58625 * 17 2 1 32 32 H 1.09001 * 117.49733 * 214.97413 * 18 17 2 33 33 H 1.08995 * 117.49577 * 359.97438 * 18 17 2 34 34 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 35 35 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0570 -2.4766 6 8 1.0118 1.0873 -2.3633 7 7 1.9847 -0.3920 -3.7001 8 6 1.5967 0.3642 -4.8933 9 6 2.0981 -0.3468 -6.1238 10 1 2.6509 -1.2695 -6.0267 11 6 1.8521 0.1811 -7.3734 12 7 2.2892 -0.4396 -8.4473 13 14 0.8966 1.7774 -7.5414 14 1 1.8399 2.9240 -7.5158 15 1 0.1533 1.7765 -8.8270 16 1 -0.0631 1.9008 -6.4149 17 6 2.0400 -0.7211 1.2493 18 6 3.0757 0.0041 2.1109 19 6 1.6373 -0.1481 2.6097 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6440 1.9013 0.7813 24 1 3.0283 1.4120 -0.0004 25 1 3.1264 -0.7995 -1.2055 26 1 1.6055 -1.7199 -1.2950 27 1 2.4879 -1.2163 -3.7907 28 1 0.5104 0.4424 -4.9367 29 1 2.0313 1.3628 -4.8478 30 1 2.1158 -0.0684 -9.3265 31 1 2.1253 -1.8045 1.1649 32 1 3.8425 -0.6022 2.5932 33 1 3.3942 0.9950 1.7875 34 1 1.0093 0.7428 2.6145 35 1 1.4577 -0.8546 3.4201 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687113899.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:44 Heat of formation + Delta-G solvation = -13.946644 kcal Electronic energy + Delta-G solvation = -15804.011424 eV Core-core repulsion = 13223.723013 eV Total energy + Delta-G solvation = -2580.288411 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.72635 -38.02588 -34.32844 -33.53576 -32.25628 -29.89566 -28.50849 -26.89090 -23.65068 -22.49103 -21.79792 -19.68866 -18.82310 -17.15507 -16.34192 -15.93410 -15.51053 -15.09505 -14.80334 -14.50059 -13.76940 -13.53252 -12.81396 -12.62657 -12.34701 -12.15045 -11.90199 -11.76705 -11.54193 -11.14491 -11.07864 -10.92124 -10.65488 -10.49712 -10.05854 -9.90551 -9.41732 -8.91694 -8.70409 -8.33316 -7.92724 -6.16013 -4.17321 3.31290 3.37825 3.47112 3.52954 3.56509 4.07634 4.38970 4.56362 4.63212 4.69313 4.79376 4.99039 5.19516 5.25453 5.36409 5.39070 5.61391 5.73125 5.77778 5.84409 5.84901 5.94453 6.04612 6.16976 6.63282 6.93865 7.18770 7.35679 7.39652 7.53794 7.60536 8.25396 8.67918 8.84016 9.20062 9.46065 10.96135 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.059524 B = 0.005412 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.284606 B = 5172.676913 C = 5363.930657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.168 3.832 3 N -0.814 5.814 4 C -0.129 4.129 5 C 0.501 3.499 6 O -0.523 6.523 7 N -0.716 5.716 8 C 0.223 3.777 9 C -0.541 4.541 10 H 0.078 0.922 11 C 0.076 3.924 12 N -0.895 5.895 13 Si 0.878 3.122 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.261 1.261 17 C -0.180 4.180 18 C -0.188 4.188 19 C -0.177 4.177 20 H 0.047 0.953 21 H 0.088 0.912 22 H 0.051 0.949 23 H 0.334 0.666 24 H 0.334 0.666 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.392 0.608 28 H 0.022 0.978 29 H 0.018 0.982 30 H 0.267 0.733 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 -1.131 19.832 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.074 3.926 3 N -0.345 5.345 4 C -0.170 4.170 5 C 0.286 3.714 6 O -0.400 6.400 7 N -0.366 5.366 8 C 0.101 3.899 9 C -0.579 4.579 10 H 0.096 0.904 11 C -0.127 4.127 12 N -0.533 5.533 13 Si 0.704 3.296 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.185 1.185 17 C -0.201 4.201 18 C -0.225 4.225 19 C -0.214 4.214 20 H 0.066 0.934 21 H 0.106 0.894 22 H 0.070 0.930 23 H 0.147 0.853 24 H 0.148 0.852 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.225 0.775 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.750 -0.281 18.967 18.983 hybrid contribution 0.407 -0.039 0.680 0.793 sum -0.343 -0.320 19.646 19.652 Atomic orbital electron populations 1.21928 0.93246 1.01355 1.03487 1.19964 0.95477 0.87343 0.89781 1.58781 1.12834 1.12047 1.50803 1.21721 1.02275 0.99639 0.93369 1.20245 0.80742 0.86166 0.84296 1.90643 1.39404 1.23720 1.86213 1.46208 1.56785 1.27419 1.06202 1.19395 0.95645 0.92187 0.82713 1.21141 1.37083 1.10493 0.89178 0.90400 1.24806 0.95061 0.97365 0.95483 1.69890 1.45728 1.39549 0.98128 0.86801 0.80958 0.83813 0.78007 1.19916 1.21029 1.18482 1.23391 1.03511 1.00145 0.93022 1.23075 0.92671 1.02376 1.04367 1.22907 0.97777 1.03360 0.97397 0.93391 0.89353 0.93021 0.85281 0.85165 0.89738 0.89264 0.77512 0.96031 0.96394 0.92366 0.87734 0.88911 0.88685 0.88819 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.32 37.16 0.31 -1.58 16 2 C 0.17 2.07 0.66 -131.60 -0.09 1.98 16 3 N -0.81 -10.57 6.60 0.74 0.00 -10.56 16 4 C -0.13 -1.75 4.88 -27.88 -0.14 -1.89 16 5 C 0.50 9.50 7.36 -10.98 -0.08 9.42 16 6 O -0.52 -11.65 13.02 5.56 0.07 -11.57 16 7 N -0.72 -14.79 5.55 -61.47 -0.34 -15.13 16 8 C 0.22 5.62 4.50 -5.19 -0.02 5.60 16 9 C -0.54 -15.15 9.83 -34.44 -0.34 -15.49 16 10 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 11 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 12 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 13 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 14 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 17 C -0.18 -1.75 5.15 -90.61 -0.47 -2.22 16 18 C -0.19 -1.60 9.62 -26.73 -0.26 -1.86 16 19 C -0.18 -1.52 9.42 -26.73 -0.25 -1.77 16 20 H 0.05 0.56 7.29 -51.93 -0.38 0.19 16 21 H 0.09 1.49 5.95 -51.93 -0.31 1.18 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.33 3.81 7.92 -39.29 -0.31 3.50 16 24 H 0.33 3.97 7.51 -39.29 -0.30 3.67 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.39 7.20 8.32 -40.82 -0.34 6.86 16 28 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 29 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 30 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.80 6.15 -51.93 -0.32 0.48 16 34 H 0.09 0.81 7.20 -51.93 -0.37 0.43 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 282.65 15.07 4.26 4.26 Total: -1.00 -31.97 282.65 -6.54 -38.51 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.21 Total: 9.17 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -1.43 Total: -5.70 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.44 Total: -51.91 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.07 Total: -11.57 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.97 -6.54 -38.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687113899.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.565 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds