Wall clock time and date at job start Mon Mar 30 2020 03:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 109.46913 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99588 * 2 1 3 5 5 C 1.50709 * 109.46995 * 65.00133 * 4 2 1 6 6 O 1.21282 * 119.99515 * 0.02562 * 5 4 2 7 7 N 1.34771 * 119.99835 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99760 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47120 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00164 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00234 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00326 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99927 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46998 * 90.00232 * 13 11 9 15 15 H 1.48500 * 109.47396 * 210.00324 * 13 11 9 16 16 H 1.48501 * 109.47329 * 330.00417 * 13 11 9 17 17 C 1.53003 * 109.47107 * 119.99466 * 2 1 3 18 18 C 1.53001 * 117.51964 * 231.28841 * 17 2 1 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 2 20 20 H 1.08996 * 109.47501 * 299.99931 * 1 2 3 21 21 H 1.09004 * 109.47169 * 60.00690 * 1 2 3 22 22 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 23 23 H 1.00894 * 111.00000 * 56.03965 * 3 2 1 24 24 H 1.00901 * 111.00027 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47570 * 184.99686 * 4 2 1 26 26 H 1.08999 * 109.47120 * 305.00120 * 4 2 1 27 27 H 0.97000 * 120.00258 * 0.02562 * 7 5 4 28 28 H 1.08996 * 109.47468 * 300.00207 * 8 7 5 29 29 H 1.08999 * 109.46869 * 60.00361 * 8 7 5 30 30 H 0.97003 * 119.99988 * 179.97438 * 12 11 9 31 31 H 1.09002 * 115.54973 * 85.58625 * 17 2 1 32 32 H 1.09001 * 117.49733 * 214.97413 * 18 17 2 33 33 H 1.08995 * 117.49577 * 359.97438 * 18 17 2 34 34 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 35 35 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0570 -2.4766 6 8 1.0118 1.0873 -2.3633 7 7 1.9847 -0.3920 -3.7001 8 6 1.5967 0.3642 -4.8933 9 6 2.0981 -0.3468 -6.1238 10 1 2.6509 -1.2695 -6.0267 11 6 1.8521 0.1811 -7.3734 12 7 2.2892 -0.4396 -8.4473 13 14 0.8966 1.7774 -7.5414 14 1 1.8399 2.9240 -7.5158 15 1 0.1533 1.7765 -8.8270 16 1 -0.0631 1.9008 -6.4149 17 6 2.0400 -0.7211 1.2493 18 6 3.0757 0.0041 2.1109 19 6 1.6373 -0.1481 2.6097 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6440 1.9013 0.7813 24 1 3.0283 1.4120 -0.0004 25 1 3.1264 -0.7995 -1.2055 26 1 1.6055 -1.7199 -1.2950 27 1 2.4879 -1.2163 -3.7907 28 1 0.5104 0.4424 -4.9367 29 1 2.0313 1.3628 -4.8478 30 1 2.1158 -0.0684 -9.3265 31 1 2.1253 -1.8045 1.1649 32 1 3.8425 -0.6022 2.5932 33 1 3.3942 0.9950 1.7875 34 1 1.0093 0.7428 2.6145 35 1 1.4577 -0.8546 3.4201 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687113899.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:44 Heat of formation + Delta-G solvation = -37.903475 kcal Electronic energy + Delta-G solvation = -15805.050270 eV Core-core repulsion = 13223.723013 eV Total energy + Delta-G solvation = -2581.327257 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.91043 -39.24711 -36.05843 -34.61922 -34.30855 -31.13122 -30.01628 -28.37013 -24.83047 -23.57307 -23.11998 -21.28342 -19.77599 -19.02947 -17.66146 -17.21714 -16.60037 -16.46012 -16.32736 -15.84263 -15.47750 -14.76798 -14.59405 -14.07485 -13.90896 -13.62190 -13.01863 -12.89120 -12.67839 -12.55587 -12.45691 -12.13173 -12.02516 -11.91187 -11.62443 -11.23293 -10.89871 -10.84083 -10.43173 -9.71319 -9.31436 -8.38720 -6.44916 1.33227 1.35069 1.48559 2.02958 2.29443 2.61969 2.90489 2.96956 3.61902 3.77877 3.86405 4.04033 4.11852 4.31657 4.43006 4.52533 4.71411 4.77282 4.87466 4.92013 4.96514 5.02822 5.09364 5.10288 5.23996 5.28861 5.31978 5.51143 5.71530 6.14613 6.45152 6.56825 6.71359 7.04567 7.19998 7.68015 8.76230 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.059524 B = 0.005412 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.284606 B = 5172.676913 C = 5363.930657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.170 3.830 3 N -0.834 5.834 4 C -0.120 4.120 5 C 0.498 3.502 6 O -0.557 6.557 7 N -0.719 5.719 8 C 0.236 3.764 9 C -0.545 4.545 10 H 0.058 0.942 11 C 0.026 3.974 12 N -0.933 5.933 13 Si 0.939 3.061 14 H -0.266 1.266 15 H -0.273 1.273 16 H -0.262 1.262 17 C -0.184 4.184 18 C -0.182 4.182 19 C -0.173 4.173 20 H 0.058 0.942 21 H 0.048 0.952 22 H 0.063 0.937 23 H 0.341 0.659 24 H 0.339 0.661 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.403 0.597 28 H 0.007 0.993 29 H 0.006 0.994 30 H 0.272 0.728 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -1.220 21.660 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.076 3.924 3 N -0.366 5.366 4 C -0.161 4.161 5 C 0.285 3.715 6 O -0.435 6.435 7 N -0.370 5.370 8 C 0.112 3.888 9 C -0.583 4.583 10 H 0.076 0.924 11 C -0.174 4.174 12 N -0.572 5.572 13 Si 0.763 3.237 14 H -0.191 1.191 15 H -0.198 1.198 16 H -0.187 1.187 17 C -0.204 4.204 18 C -0.219 4.219 19 C -0.210 4.210 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.155 0.845 24 H 0.154 0.846 25 H 0.123 0.877 26 H 0.131 0.869 27 H 0.238 0.762 28 H 0.025 0.975 29 H 0.023 0.977 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.615 -0.391 20.823 20.836 hybrid contribution 0.382 -0.045 0.146 0.411 sum -0.233 -0.436 20.969 20.975 Atomic orbital electron populations 1.21871 0.94228 1.01676 1.02006 1.19903 0.94709 0.87335 0.90446 1.58756 1.13377 1.12826 1.51622 1.21769 1.03721 0.99850 0.90726 1.21187 0.79400 0.85981 0.84896 1.90636 1.40664 1.25465 1.86720 1.46123 1.57462 1.27716 1.05732 1.18961 0.94397 0.91809 0.83620 1.21346 1.36556 1.09934 0.90474 0.92433 1.25605 0.96001 1.00575 0.95254 1.69988 1.47129 1.41294 0.98799 0.85838 0.79716 0.79979 0.78203 1.19086 1.19766 1.18672 1.23184 1.04742 1.00387 0.92094 1.23133 0.92869 1.02330 1.03557 1.22967 0.97801 1.03348 0.96865 0.92294 0.93309 0.91807 0.84511 0.84596 0.87660 0.86938 0.76207 0.97506 0.97651 0.91902 0.86701 0.87787 0.88736 0.89088 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.32 71.98 0.60 -2.93 16 2 C 0.17 3.82 0.66 3.52 0.00 3.82 16 3 N -0.83 -20.47 6.60 -151.56 -1.00 -21.47 16 4 C -0.12 -2.98 4.88 29.85 0.15 -2.84 16 5 C 0.50 18.47 7.36 87.66 0.65 19.11 16 6 O -0.56 -24.75 13.02 -3.04 -0.04 -24.79 16 7 N -0.72 -29.39 5.55 -466.79 -2.59 -31.98 16 8 C 0.24 11.96 4.50 85.63 0.38 12.34 16 9 C -0.55 -30.86 9.83 25.60 0.25 -30.61 16 10 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16 11 C 0.03 1.48 5.47 84.65 0.46 1.94 16 12 N -0.93 -56.65 13.96 21.45 0.30 -56.35 16 13 Si 0.94 45.28 27.47 68.60 1.88 47.16 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 15 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.26 -12.64 6.54 99.48 0.65 -11.99 16 17 C -0.18 -3.00 5.15 -10.79 -0.06 -3.05 16 18 C -0.18 -2.55 9.62 30.59 0.29 -2.25 16 19 C -0.17 -2.45 9.42 30.60 0.29 -2.16 16 20 H 0.06 1.31 7.29 -2.39 -0.02 1.29 16 21 H 0.05 1.63 5.95 -2.39 -0.01 1.62 16 22 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 23 H 0.34 7.33 7.92 -89.70 -0.71 6.62 16 24 H 0.34 7.49 7.51 -89.69 -0.67 6.82 16 25 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.40 14.54 8.32 -92.71 -0.77 13.77 16 28 H 0.01 0.38 7.20 -2.39 -0.02 0.36 16 29 H 0.01 0.30 7.57 -2.39 -0.02 0.28 16 30 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.11 1.68 8.11 -2.39 -0.02 1.66 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.34 6.15 -2.39 -0.01 1.33 16 34 H 0.09 1.35 7.20 -2.39 -0.02 1.33 16 35 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -68.69 282.65 0.47 -68.21 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: -1.10 Total: 25.83 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 3.02 Total: -6.62 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -3.29 Total: -109.80 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.04 Total: -24.79 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -68.69 0.47 -68.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687113899.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.311 kcal (2) G-P(sol) polarization free energy of solvation -68.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds