Wall clock time and date at job start Mon Mar 30 2020 03:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08999 * 109.90521 * 53.89649 * 3 2 1 5 5 N 1.47897 * 109.91720 * 292.59143 * 3 2 1 6 6 C 1.48533 * 105.82283 * 215.31326 * 5 3 2 7 7 C 1.54947 * 103.22142 * 39.20997 * 6 5 3 8 8 C 1.53991 * 109.91640 * 175.00073 * 3 2 1 9 9 H 1.09007 * 110.31023 * 1.56687 * 8 3 2 10 10 C 1.50704 * 110.31157 * 239.49689 * 8 3 2 11 11 O 1.21288 * 119.99556 * 359.97438 * 10 8 3 12 12 N 1.34776 * 120.00046 * 180.02562 * 10 8 3 13 13 C 1.46499 * 119.99497 * 179.97438 * 12 10 8 14 14 C 1.50709 * 109.46711 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99599 * 0.02562 * 14 13 12 16 16 C 1.37871 * 119.99938 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00120 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 120.00069 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47052 * 89.99686 * 18 16 14 20 20 H 1.48498 * 109.46842 * 209.99683 * 18 16 14 21 21 H 1.48496 * 109.46906 * 329.99471 * 18 16 14 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 27 27 H 1.00894 * 111.00188 * 335.83179 * 5 3 2 28 28 H 1.09001 * 110.67303 * 280.78045 * 6 5 3 29 29 H 1.08996 * 110.66902 * 157.64228 * 6 5 3 30 30 H 1.09002 * 110.71903 * 204.23036 * 7 6 5 31 31 H 1.08991 * 110.87345 * 81.01665 * 7 6 5 32 32 H 0.96998 * 120.00304 * 359.97438 * 12 10 8 33 33 H 1.08996 * 109.47280 * 299.98985 * 13 12 10 34 34 H 1.08999 * 109.47578 * 59.99717 * 13 12 10 35 35 H 0.96993 * 119.99985 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5944 1.9937 0.8280 5 7 1.7044 2.0955 -1.2838 6 6 2.8408 3.0029 -1.5859 7 6 4.0777 2.1814 -1.1432 8 6 3.5747 1.4563 0.1262 9 1 3.9608 0.4374 0.1597 10 6 3.9913 2.2134 1.3608 11 8 3.1502 2.7037 2.0841 12 7 5.2986 2.3465 1.6607 13 6 5.7034 3.0830 2.8606 14 6 7.2069 3.0846 2.9655 15 1 7.8012 2.5872 2.2133 16 6 7.8235 3.7220 4.0211 17 7 9.1355 3.7239 4.1125 18 14 6.7955 4.5830 5.3218 19 1 6.4729 3.6266 6.4109 20 1 7.5597 5.7280 5.8787 21 1 5.5368 5.0789 4.7095 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.5826 1.4123 -2.0161 28 1 2.7630 3.9232 -1.0069 29 1 2.8858 3.2211 -2.6529 30 1 4.9132 2.8399 -0.9057 31 1 4.3615 1.4622 -1.9114 32 1 5.9713 1.9547 1.0820 33 1 5.3424 4.1094 2.7961 34 1 5.2786 2.6031 3.7422 35 1 9.5693 4.1720 4.8553 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690923880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:13 Heat of formation + Delta-G solvation = -52.760397 kcal Electronic energy + Delta-G solvation = -15880.047451 eV Core-core repulsion = 13298.075950 eV Total energy + Delta-G solvation = -2581.971502 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04054 -37.60778 -34.34920 -33.28062 -32.37421 -30.47027 -27.99556 -27.67825 -23.59485 -22.27305 -21.63246 -20.60898 -19.40123 -17.29374 -16.20736 -16.16594 -15.39162 -14.96843 -14.53467 -14.35186 -13.76631 -13.38798 -13.16759 -13.04772 -12.52660 -12.41692 -12.20900 -11.86219 -11.36234 -11.20982 -11.06662 -11.01328 -10.76804 -10.69437 -10.62453 -9.98542 -9.51539 -9.21739 -8.79649 -8.58820 -8.17121 -6.23387 -4.25831 3.18772 3.25860 3.32256 3.40903 3.92265 4.16102 4.31924 4.67829 4.82975 4.88559 5.07430 5.11841 5.12253 5.25809 5.47981 5.52006 5.59385 5.65103 5.80544 5.86331 5.95576 5.97293 6.12822 6.23716 6.42311 6.71878 6.81054 7.05149 7.20498 7.36512 7.38196 8.11434 8.49640 8.72913 8.91357 9.36852 10.88569 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.043394 B = 0.006003 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.089574 B = 4663.197007 C = 4906.420341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.079 3.921 4 H 0.113 0.887 5 N -0.665 5.665 6 C 0.043 3.957 7 C -0.149 4.149 8 C -0.140 4.140 9 H 0.098 0.902 10 C 0.509 3.491 11 O -0.554 6.554 12 N -0.704 5.704 13 C 0.220 3.780 14 C -0.544 4.544 15 H 0.079 0.921 16 C 0.078 3.922 17 N -0.892 5.892 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.261 1.261 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.331 0.669 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.396 0.604 33 H 0.025 0.975 34 H 0.020 0.980 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.060 -6.192 -11.346 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.031 4.031 4 H 0.130 0.870 5 N -0.292 5.292 6 C -0.087 4.087 7 C -0.189 4.189 8 C -0.163 4.163 9 H 0.116 0.884 10 C 0.293 3.707 11 O -0.433 6.433 12 N -0.352 5.352 13 C 0.098 3.902 14 C -0.582 4.582 15 H 0.097 0.903 16 C -0.126 4.126 17 N -0.530 5.530 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.185 1.185 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.147 0.853 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.229 0.771 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.962 -5.249 -10.428 17.444 hybrid contribution 0.940 -0.442 0.259 1.071 sum -12.022 -5.691 -10.168 16.743 Atomic orbital electron populations 1.21704 0.95122 1.00966 1.02600 1.21828 0.96909 0.95662 1.01996 1.22534 0.91319 0.94797 0.94444 0.86967 1.62906 1.41075 1.20807 1.04389 1.23124 0.87621 0.97217 1.00709 1.23120 1.00117 0.99689 0.95925 1.22637 0.98713 1.00509 0.94483 0.88422 1.20275 0.83203 0.80789 0.86417 1.90622 1.51036 1.49705 1.51926 1.46177 1.05999 1.54979 1.28072 1.19497 0.96090 0.91720 0.82937 1.21088 0.88861 1.36822 1.11402 0.90305 1.24795 0.94902 0.95326 0.97558 1.69880 1.08265 1.43186 1.31637 0.86817 0.80941 0.79828 0.82118 1.19834 1.20858 1.18509 0.92480 0.92110 0.93249 0.91300 0.92277 0.85340 0.89940 0.90665 0.89939 0.90770 0.77079 0.95726 0.96198 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.82 37.16 0.37 -1.10 16 2 C -0.13 -1.35 5.07 -26.73 -0.14 -1.49 16 3 C 0.08 1.05 2.99 -66.65 -0.20 0.85 16 4 H 0.11 1.90 6.42 -51.93 -0.33 1.57 16 5 N -0.66 -7.84 6.99 -103.13 -0.72 -8.56 16 6 C 0.04 0.50 7.55 -1.89 -0.01 0.49 16 7 C -0.15 -1.76 6.60 -24.87 -0.16 -1.92 16 8 C -0.14 -1.94 3.02 -90.41 -0.27 -2.22 16 9 H 0.10 1.19 7.69 -51.93 -0.40 0.79 16 10 C 0.51 9.71 7.06 -10.98 -0.08 9.63 16 11 O -0.55 -12.65 15.24 5.55 0.08 -12.57 16 12 N -0.70 -14.31 5.33 -61.47 -0.33 -14.64 16 13 C 0.22 5.44 4.50 -5.19 -0.02 5.42 16 14 C -0.54 -14.95 9.83 -34.44 -0.34 -15.29 16 15 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 18 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.59 7.85 -51.93 -0.41 0.18 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.54 8.00 -51.93 -0.42 0.12 16 27 H 0.33 3.19 8.31 -39.29 -0.33 2.86 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.06 7.68 -51.93 -0.40 0.66 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.40 7.12 8.32 -40.82 -0.34 6.78 16 33 H 0.02 0.65 7.20 -51.93 -0.37 0.27 16 34 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 285.67 15.07 4.31 4.31 Total: -1.00 -31.30 285.67 -7.01 -38.32 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.50 Total: 5.51 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -0.96 Total: -3.51 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.27 Total: -48.93 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.30 -7.01 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690923880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.442 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds