Wall clock time and date at job start Mon Mar 30 2020 03:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08999 * 109.90521 * 53.89649 * 3 2 1 5 5 N 1.47897 * 109.91720 * 292.59143 * 3 2 1 6 6 C 1.48533 * 105.82283 * 215.31326 * 5 3 2 7 7 C 1.54947 * 103.22142 * 39.20997 * 6 5 3 8 8 C 1.53991 * 109.91640 * 175.00073 * 3 2 1 9 9 H 1.09007 * 110.31023 * 1.56687 * 8 3 2 10 10 C 1.50704 * 110.31157 * 239.49689 * 8 3 2 11 11 O 1.21288 * 119.99556 * 359.97438 * 10 8 3 12 12 N 1.34776 * 120.00046 * 180.02562 * 10 8 3 13 13 C 1.46499 * 119.99497 * 179.97438 * 12 10 8 14 14 C 1.50709 * 109.46711 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99599 * 0.02562 * 14 13 12 16 16 C 1.37871 * 119.99938 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00120 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 120.00069 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47052 * 89.99686 * 18 16 14 20 20 H 1.48498 * 109.46842 * 209.99683 * 18 16 14 21 21 H 1.48496 * 109.46906 * 329.99471 * 18 16 14 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 27 27 H 1.00894 * 111.00188 * 335.83179 * 5 3 2 28 28 H 1.09001 * 110.67303 * 280.78045 * 6 5 3 29 29 H 1.08996 * 110.66902 * 157.64228 * 6 5 3 30 30 H 1.09002 * 110.71903 * 204.23036 * 7 6 5 31 31 H 1.08991 * 110.87345 * 81.01665 * 7 6 5 32 32 H 0.96998 * 120.00304 * 359.97438 * 12 10 8 33 33 H 1.08996 * 109.47280 * 299.98985 * 13 12 10 34 34 H 1.08999 * 109.47578 * 59.99717 * 13 12 10 35 35 H 0.96993 * 119.99985 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5944 1.9937 0.8280 5 7 1.7044 2.0955 -1.2838 6 6 2.8408 3.0029 -1.5859 7 6 4.0777 2.1814 -1.1432 8 6 3.5747 1.4563 0.1262 9 1 3.9608 0.4374 0.1597 10 6 3.9913 2.2134 1.3608 11 8 3.1502 2.7037 2.0841 12 7 5.2986 2.3465 1.6607 13 6 5.7034 3.0830 2.8606 14 6 7.2069 3.0846 2.9655 15 1 7.8012 2.5872 2.2133 16 6 7.8235 3.7220 4.0211 17 7 9.1355 3.7239 4.1125 18 14 6.7955 4.5830 5.3218 19 1 6.4729 3.6266 6.4109 20 1 7.5597 5.7280 5.8787 21 1 5.5368 5.0789 4.7095 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.5826 1.4123 -2.0161 28 1 2.7630 3.9232 -1.0069 29 1 2.8858 3.2211 -2.6529 30 1 4.9132 2.8399 -0.9057 31 1 4.3615 1.4622 -1.9114 32 1 5.9713 1.9547 1.0820 33 1 5.3424 4.1094 2.7961 34 1 5.2786 2.6031 3.7422 35 1 9.5693 4.1720 4.8553 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690923880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:12 Heat of formation + Delta-G solvation = -76.965246 kcal Electronic energy + Delta-G solvation = -15881.097053 eV Core-core repulsion = 13298.075950 eV Total energy + Delta-G solvation = -2583.021103 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.36102 -38.93746 -36.20866 -34.53982 -34.05157 -31.73961 -29.59967 -28.87107 -24.98394 -23.67651 -22.86428 -21.85908 -20.82649 -19.09829 -17.88727 -17.17569 -17.07625 -16.31684 -16.01803 -15.75965 -15.26333 -14.72251 -14.53453 -14.28015 -14.11473 -13.88786 -13.38456 -13.14297 -12.91480 -12.73428 -12.29421 -12.16502 -11.97918 -11.93433 -11.72154 -11.63242 -11.57424 -10.94948 -10.76330 -9.97752 -9.56205 -8.43034 -6.50159 1.29679 1.32217 1.44652 1.67155 2.25047 2.40767 2.92236 3.19958 3.64099 3.76252 3.88869 4.14096 4.19634 4.29149 4.41675 4.55303 4.62798 4.74905 4.83564 4.93286 4.96197 4.98201 5.03125 5.14642 5.17999 5.23155 5.37104 5.45848 5.51752 5.76690 6.05479 6.50396 6.58084 6.79825 7.12551 7.36589 8.71681 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.043394 B = 0.006003 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.089574 B = 4663.197007 C = 4906.420341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.082 3.918 4 H 0.070 0.930 5 N -0.666 5.666 6 C 0.042 3.958 7 C -0.142 4.142 8 C -0.133 4.133 9 H 0.124 0.876 10 C 0.506 3.494 11 O -0.595 6.595 12 N -0.704 5.704 13 C 0.231 3.769 14 C -0.547 4.547 15 H 0.060 0.940 16 C 0.029 3.971 17 N -0.929 5.929 18 Si 0.936 3.064 19 H -0.264 1.264 20 H -0.271 1.271 21 H -0.264 1.264 22 H 0.038 0.962 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.349 0.651 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.408 0.592 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.936 -7.226 -12.813 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.029 4.029 4 H 0.088 0.912 5 N -0.295 5.295 6 C -0.087 4.087 7 C -0.181 4.181 8 C -0.155 4.155 9 H 0.142 0.858 10 C 0.293 3.707 11 O -0.476 6.476 12 N -0.353 5.353 13 C 0.108 3.892 14 C -0.585 4.585 15 H 0.078 0.922 16 C -0.172 4.172 17 N -0.568 5.568 18 Si 0.759 3.241 19 H -0.189 1.189 20 H -0.196 1.196 21 H -0.188 1.188 22 H 0.057 0.943 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.167 0.833 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.243 0.757 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.838 -6.306 -11.932 19.329 hybrid contribution 1.205 -0.130 0.659 1.379 sum -12.633 -6.436 -11.273 18.113 Atomic orbital electron populations 1.21682 0.94690 1.01879 1.01916 1.21801 0.97267 0.93804 1.02996 1.22357 0.90532 0.96046 0.93952 0.91209 1.62754 1.41173 1.21282 1.04331 1.23111 0.87562 0.96025 1.02024 1.23157 0.99474 1.00008 0.95502 1.22705 0.99370 1.01017 0.92444 0.85837 1.21229 0.81956 0.80059 0.87451 1.90606 1.51951 1.51366 1.53706 1.46035 1.07169 1.54940 1.27124 1.19090 0.94199 0.91407 0.84544 1.21269 0.90082 1.36225 1.10878 0.92174 1.25571 0.95876 0.96070 0.99668 1.69973 1.09744 1.44358 1.32740 0.85885 0.79264 0.79204 0.79705 1.18933 1.19598 1.18815 0.94326 0.91671 0.91510 0.91927 0.89526 0.83309 0.92984 0.87632 0.91269 0.87132 0.75655 0.97255 0.97253 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.82 71.98 0.71 -1.89 16 2 C -0.12 -2.29 5.07 30.60 0.16 -2.13 16 3 C 0.08 2.06 2.99 45.06 0.13 2.19 16 4 H 0.07 2.41 6.42 -2.39 -0.02 2.39 16 5 N -0.67 -14.19 6.99 -480.21 -3.36 -17.55 16 6 C 0.04 0.90 7.55 86.65 0.65 1.55 16 7 C -0.14 -2.96 6.60 31.80 0.21 -2.75 16 8 C -0.13 -3.43 3.02 -10.66 -0.03 -3.46 16 9 H 0.12 2.60 7.69 -2.38 -0.02 2.59 16 10 C 0.51 19.25 7.06 87.66 0.62 19.87 16 11 O -0.59 -27.80 15.24 -3.05 -0.05 -27.85 16 12 N -0.70 -28.56 5.33 -466.77 -2.49 -31.05 16 13 C 0.23 11.59 4.50 85.64 0.39 11.97 16 14 C -0.55 -30.41 9.83 25.60 0.25 -30.16 16 15 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 16 C 0.03 1.63 5.47 84.65 0.46 2.10 16 17 N -0.93 -55.58 13.96 21.45 0.30 -55.28 16 18 Si 0.94 44.56 27.47 68.60 1.88 46.45 16 19 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.26 -12.59 6.54 99.48 0.65 -11.94 16 22 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.06 1.11 7.85 -2.39 -0.02 1.09 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.09 1.20 8.00 -2.39 -0.02 1.18 16 27 H 0.35 5.40 8.31 -89.70 -0.75 4.65 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.66 7.68 -2.39 -0.02 1.64 16 31 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.41 14.46 8.32 -92.71 -0.77 13.69 16 33 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 34 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 35 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -68.71 285.67 -0.65 -69.36 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -0.49 Total: 18.63 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 3.55 Total: -2.71 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -5.54 Total: -103.88 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.05 Total: -27.85 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Total: -68.71 -0.65 -69.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690923880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.606 kcal (2) G-P(sol) polarization free energy of solvation -68.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds