Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53498 * 114.20794 * 2 1 4 4 N 1.47063 * 87.98536 * 139.85537 * 3 2 1 5 5 C 1.34777 * 136.05761 * 152.84647 * 4 3 2 6 6 O 1.21283 * 120.00223 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99993 * 179.97438 * 5 4 3 8 8 H 1.08999 * 109.47018 * 319.99583 * 7 5 4 9 9 N 1.46906 * 109.47187 * 200.00134 * 7 5 4 10 10 C 1.52994 * 109.47012 * 80.00326 * 7 5 4 11 11 C 1.53004 * 109.47238 * 184.99957 * 10 7 5 12 12 C 1.50701 * 109.47146 * 179.97438 * 11 10 7 13 13 H 1.08000 * 120.00163 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99659 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00483 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99858 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46824 * 60.00130 * 16 14 12 18 18 H 1.48497 * 109.46926 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47185 * 300.00192 * 16 14 12 20 20 C 1.47062 * 87.88517 * 333.10177 * 4 3 2 21 21 H 1.09001 * 109.46818 * 59.99518 * 1 2 3 22 22 H 1.08996 * 109.47200 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46832 * 299.99503 * 1 2 3 24 24 H 1.09002 * 113.28186 * 226.94114 * 2 1 3 25 25 H 1.09000 * 113.46329 * 25.07575 * 3 2 1 26 26 H 1.08997 * 113.52534 * 254.64977 * 3 2 1 27 27 H 1.00896 * 111.00309 * 176.04524 * 9 7 5 28 28 H 1.00902 * 110.99923 * 300.00687 * 9 7 5 29 29 H 1.09003 * 109.46995 * 304.99548 * 10 7 5 30 30 H 1.09003 * 109.47429 * 64.99905 * 10 7 5 31 31 H 1.08993 * 109.46824 * 299.99739 * 11 10 7 32 32 H 1.09003 * 109.46953 * 59.99657 * 11 10 7 33 33 H 0.96994 * 120.00358 * 179.97438 * 15 14 12 34 34 H 1.08999 * 113.46666 * 141.67883 * 20 4 3 35 35 H 1.09003 * 113.46782 * 272.11892 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1594 1.4000 0.0000 4 7 3.1629 0.8922 0.9476 5 6 4.4375 1.1936 1.2654 6 8 5.0088 2.0959 0.6906 7 6 5.1526 0.4102 2.3359 8 1 4.4663 0.2089 3.1585 9 7 6.2957 1.1886 2.8314 10 6 5.6514 -0.9132 1.7522 11 6 6.2669 -1.7623 2.8663 12 6 6.7576 -3.0660 2.2915 13 1 6.6425 -3.2686 1.2369 14 6 7.3546 -3.9997 3.1117 15 7 7.4953 -3.7529 4.3957 16 14 7.9636 -5.6156 2.3990 17 1 8.9889 -5.3430 1.3599 18 1 8.5619 -6.4391 3.4801 19 1 6.8246 -6.3486 1.7903 20 6 2.1657 -0.0935 1.3911 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.9608 -0.6836 -0.7316 25 1 1.5114 2.1672 0.4238 26 1 2.5791 1.6883 -0.9637 27 1 6.7534 0.7131 3.5946 28 1 6.9469 1.3884 2.0871 29 1 4.8154 -1.4511 1.3052 30 1 6.4042 -0.7132 0.9898 31 1 7.1028 -1.2244 3.3134 32 1 5.5140 -1.9622 3.6288 33 1 7.9149 -4.4100 4.9728 34 1 2.5907 -1.0736 1.6075 35 1 1.5194 0.2718 2.1892 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697543095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = -16.709324 kcal Electronic energy + Delta-G solvation = -15722.663574 eV Core-core repulsion = 13142.255364 eV Total energy + Delta-G solvation = -2580.408210 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.37765 -38.05308 -35.39156 -32.84318 -31.67146 -29.88671 -27.68163 -26.14715 -25.61362 -23.41950 -20.79851 -20.27423 -18.72784 -17.25220 -16.30618 -15.92636 -15.63328 -14.60162 -14.56774 -14.29253 -13.93688 -13.39781 -13.27804 -12.78854 -12.71895 -12.30364 -12.05598 -11.79803 -11.58496 -11.45200 -11.06529 -10.89856 -10.70322 -10.48540 -9.97079 -9.87545 -9.28187 -9.18424 -8.61665 -8.43928 -8.16498 -6.08524 -4.11845 2.87920 3.00918 3.28202 3.33088 3.35534 4.13258 4.39011 4.62507 4.79932 4.98943 5.15982 5.20947 5.27538 5.34463 5.46553 5.50448 5.58674 5.62597 5.68712 5.78577 5.83850 5.94804 6.16939 6.31181 6.54748 6.87834 7.47917 7.52868 7.62798 7.87625 7.89264 7.92094 8.31111 8.45781 8.93817 9.52991 11.02389 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.028186 B = 0.006282 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.176810 B = 4455.769052 C = 5103.998256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.106 3.894 4 N -0.650 5.650 5 C 0.554 3.446 6 O -0.539 6.539 7 C 0.082 3.918 8 H 0.095 0.905 9 N -0.831 5.831 10 C -0.136 4.136 11 C 0.025 3.975 12 C -0.524 4.524 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.101 3.899 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.355 0.645 28 H 0.345 0.655 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.262 0.738 34 H 0.085 0.915 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.061 6.107 -5.897 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.017 4.017 4 N -0.387 5.387 5 C 0.345 3.655 6 O -0.415 6.415 7 C -0.033 4.033 8 H 0.112 0.888 9 N -0.364 5.364 10 C -0.175 4.175 11 C -0.012 4.012 12 C -0.563 4.563 13 H 0.072 0.928 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.023 4.023 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.122 0.878 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.170 0.830 28 H 0.159 0.841 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.947 7.154 -5.771 15.878 hybrid contribution 0.906 -1.805 -0.543 2.092 sum -12.042 5.348 -6.314 14.611 Atomic orbital electron populations 1.21634 0.93437 1.02441 1.02190 1.22942 0.96137 0.97686 0.98191 1.22980 0.88257 0.96369 0.94071 1.49550 1.10448 1.37341 1.41382 1.20528 0.79054 0.82815 0.83120 1.90635 1.65490 1.31614 1.53783 1.21385 0.94350 0.92146 0.95447 0.88755 1.58734 1.13142 1.49931 1.14566 1.22362 1.00409 0.93875 1.00903 1.19097 0.95653 0.93863 0.92585 1.21141 1.39018 1.01373 0.94726 0.92787 1.25006 0.95840 0.98556 0.94837 1.69936 1.43848 1.35576 1.03867 0.86642 0.79151 0.83459 0.78675 1.20222 1.21186 1.20217 1.23099 0.88521 0.93985 0.96668 0.92034 0.91876 0.92205 0.87805 0.90164 0.90807 0.82986 0.84129 0.92601 0.92740 0.96405 0.96371 0.92810 0.89649 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.80 37.16 0.36 -0.57 16 2 C -0.13 -1.21 4.68 -90.24 -0.42 -1.63 16 3 C 0.11 1.20 8.20 -8.52 -0.07 1.13 16 4 N -0.65 -9.57 3.69 -185.41 -0.68 -10.26 16 5 C 0.55 10.22 7.33 -10.98 -0.08 10.14 16 6 O -0.54 -11.61 17.03 5.56 0.09 -11.52 16 7 C 0.08 1.50 3.03 -68.86 -0.21 1.29 16 8 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 9 N -0.83 -15.21 8.94 -5.65 -0.05 -15.26 16 10 C -0.14 -2.78 4.78 -26.73 -0.13 -2.90 16 11 C 0.03 0.62 4.74 -27.88 -0.13 0.49 16 12 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 16 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.10 1.13 7.99 -8.65 -0.07 1.06 16 21 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.37 7.91 -51.93 -0.41 -0.04 16 24 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.35 6.39 7.55 -39.29 -0.30 6.10 16 28 H 0.35 6.38 8.58 -39.29 -0.34 6.04 16 29 H 0.06 1.10 7.68 -51.93 -0.40 0.71 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.09 1.02 7.68 -51.93 -0.40 0.62 16 35 H 0.08 0.79 7.95 -51.93 -0.41 0.38 16 LS Contribution 294.28 15.07 4.43 4.43 Total: -1.00 -32.11 294.28 -7.18 -39.29 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.53 Total: 6.66 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.16 Total: -4.25 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.00 Total: -50.92 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.11 -7.18 -39.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697543095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.580 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds