Wall clock time and date at job start Mon Mar 30 2020 03:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 110.36661 * 2 1 4 4 C 1.54378 * 110.32171 * 237.81956 * 2 1 3 5 5 N 1.48558 * 104.59474 * 264.95149 * 4 2 1 6 6 C 1.48556 * 104.22234 * 320.52238 * 5 4 2 7 7 C 1.54258 * 110.32464 * 122.18135 * 2 1 3 8 8 H 1.09000 * 110.32223 * 237.79404 * 7 2 1 9 9 C 1.50698 * 110.32526 * 359.89996 * 7 2 1 10 10 O 1.21285 * 120.00098 * 87.36353 * 9 7 2 11 11 N 1.34781 * 120.00091 * 267.36299 * 9 7 2 12 12 C 1.46496 * 120.00150 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.47169 * 179.97438 * 12 11 9 14 14 H 1.08006 * 120.00002 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00140 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00079 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99997 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46858 * 60.00389 * 17 15 13 19 19 H 1.48499 * 109.47003 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47002 * 300.00187 * 17 15 13 21 21 H 1.09003 * 109.47409 * 297.25302 * 1 2 3 22 22 H 1.08998 * 109.47379 * 57.25652 * 1 2 3 23 23 H 1.09003 * 109.47159 * 177.26290 * 1 2 3 24 24 H 1.08998 * 109.46968 * 182.18128 * 3 2 1 25 25 H 1.08994 * 109.46734 * 302.18728 * 3 2 1 26 26 H 1.09000 * 109.46734 * 62.18199 * 3 2 1 27 27 H 1.08996 * 110.41203 * 23.73196 * 4 2 1 28 28 H 1.09004 * 110.40660 * 146.17750 * 4 2 1 29 29 H 1.00895 * 111.00079 * 200.95758 * 5 4 2 30 30 H 1.09005 * 110.40760 * 280.69849 * 6 5 4 31 31 H 1.09007 * 110.41138 * 158.26238 * 6 5 4 32 32 H 0.97003 * 119.99646 * 0.02562 * 11 9 7 33 33 H 1.08994 * 109.47289 * 300.00449 * 12 11 9 34 34 H 1.09006 * 109.46730 * 60.00543 * 12 11 9 35 35 H 0.96996 * 120.00024 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0625 1.4344 0.0000 4 6 2.0661 -0.7710 -1.2253 5 7 2.3148 -2.1466 -0.7225 6 6 2.8806 -1.9421 0.6357 7 6 2.0658 -0.7704 1.2243 8 1 2.7081 -0.1267 1.8252 9 6 0.9224 -1.2912 2.0565 10 8 0.4291 -2.3696 1.8021 11 7 0.4480 -0.5586 3.0835 12 6 -0.6638 -1.0646 3.8922 13 6 -0.9995 -0.0632 4.9672 14 1 -0.4408 0.8582 5.0404 15 6 -2.0199 -0.3233 5.8572 16 7 -2.6999 -1.4455 5.7684 17 14 -2.4365 0.9183 7.1893 18 1 -2.8279 2.2057 6.5611 19 1 -3.5626 0.4048 8.0099 20 1 -1.2497 1.1311 8.0562 21 1 -0.3634 0.4706 0.9136 22 1 -0.3634 0.5558 -0.8643 23 1 -0.3633 -1.0265 -0.0491 24 1 3.1516 1.4176 -0.0391 25 1 1.6757 1.9655 -0.8697 26 1 1.7393 1.9419 0.9089 27 1 1.3212 -0.7859 -2.0208 28 1 2.9940 -0.3226 -1.5803 29 1 2.9673 -2.6362 -1.3162 30 1 3.9360 -1.6770 0.5719 31 1 2.7490 -2.8388 1.2414 32 1 0.8424 0.3041 3.2867 33 1 -1.5346 -1.2205 3.2555 34 1 -0.3769 -2.0097 4.3533 35 1 -3.4175 -1.6287 6.3948 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711383781.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:04 Heat of formation + Delta-G solvation = -73.745040 kcal Electronic energy + Delta-G solvation = -16240.634517 eV Core-core repulsion = 13657.753053 eV Total energy + Delta-G solvation = -2582.881464 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.48053 -38.82522 -36.08556 -34.47459 -33.95234 -31.08217 -29.08445 -28.23411 -26.22599 -24.97728 -22.97383 -21.40936 -20.10427 -18.70480 -17.68668 -17.34369 -16.86209 -16.31456 -15.97561 -15.35929 -14.83315 -14.57133 -14.45494 -14.06845 -13.89231 -13.53875 -13.31442 -13.11056 -12.92167 -12.67580 -12.62190 -12.43150 -12.22992 -11.91823 -11.67694 -11.58300 -11.50540 -10.78498 -10.52164 -9.75788 -9.38585 -8.28946 -6.46093 1.42129 1.46648 1.54876 1.84878 2.32817 2.62299 3.05479 3.33938 3.54366 3.62743 3.92453 4.16226 4.27768 4.34751 4.44357 4.63497 4.73285 4.76188 4.82805 4.93333 4.99900 5.09615 5.13672 5.22218 5.25794 5.32858 5.40596 5.50957 5.72677 5.85982 5.86359 6.53437 6.65442 6.98651 7.23867 7.58303 8.83203 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.045244 B = 0.006373 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.724459 B = 4392.194894 C = 4658.554086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C -0.134 4.134 4 C 0.050 3.950 5 N -0.681 5.681 6 C 0.059 3.941 7 C -0.106 4.106 8 H 0.121 0.879 9 C 0.510 3.490 10 O -0.591 6.591 11 N -0.711 5.711 12 C 0.271 3.729 13 C -0.556 4.556 14 H 0.083 0.917 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.986 3.014 18 H -0.261 1.261 19 H -0.285 1.285 20 H -0.261 1.261 21 H 0.042 0.958 22 H 0.075 0.925 23 H 0.030 0.970 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.347 0.653 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.404 0.596 33 H -0.018 1.018 34 H -0.017 1.017 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.326 8.017 -11.634 19.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.051 4.051 3 C -0.191 4.191 4 C -0.079 4.079 5 N -0.311 5.311 6 C -0.071 4.071 7 C -0.128 4.128 8 H 0.139 0.861 9 C 0.298 3.702 10 O -0.472 6.472 11 N -0.361 5.361 12 C 0.148 3.852 13 C -0.594 4.594 14 H 0.101 0.899 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.808 3.192 18 H -0.186 1.186 19 H -0.211 1.211 20 H -0.186 1.186 21 H 0.061 0.939 22 H 0.094 0.906 23 H 0.049 0.951 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.164 0.836 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.240 0.760 33 H 0.000 1.000 34 H 0.001 0.999 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.125 6.961 -11.533 18.124 hybrid contribution 0.151 0.461 0.800 0.936 sum 12.277 7.422 -10.733 17.916 Atomic orbital electron populations 1.21950 0.95509 1.00834 1.01818 1.21243 0.94875 0.96454 0.92566 1.21900 1.01796 0.92371 1.03074 1.23069 1.00733 0.88095 0.96044 1.63563 1.47540 1.16695 1.03293 1.22700 0.96525 0.96693 0.91169 1.22349 0.94822 0.98769 0.96822 0.86148 1.21070 0.84801 0.84239 0.80097 1.90649 1.61867 1.24206 1.70492 1.46266 1.35874 1.22577 1.31342 1.18443 0.83806 0.93957 0.89009 1.21596 1.18448 1.05140 1.14208 0.89852 1.26097 0.95336 0.97749 1.00482 1.70145 1.22315 1.26173 1.38463 0.85200 0.78019 0.78250 0.77704 1.18593 1.21084 1.18564 0.93907 0.90587 0.95074 0.90308 0.90811 0.92196 0.90291 0.90901 0.83602 0.90133 0.92414 0.76032 1.00004 0.99938 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 7.26 71.98 0.52 -3.99 16 2 C -0.05 -1.22 1.03 -51.29 -0.05 -1.27 16 3 C -0.13 -2.22 8.26 71.98 0.59 -1.63 16 4 C 0.05 1.04 6.56 86.45 0.57 1.60 16 5 N -0.68 -17.45 7.62 -500.87 -3.82 -21.27 16 6 C 0.06 1.54 6.67 86.45 0.58 2.12 16 7 C -0.11 -3.00 3.09 -10.65 -0.03 -3.03 16 8 H 0.12 2.66 7.71 -2.39 -0.02 2.64 16 9 C 0.51 21.35 4.71 87.66 0.41 21.76 16 10 O -0.59 -30.95 15.36 -3.05 -0.05 -31.00 16 11 N -0.71 -31.20 5.09 -466.79 -2.37 -33.57 16 12 C 0.27 15.37 5.43 85.63 0.46 15.84 16 13 C -0.56 -30.89 9.28 25.60 0.24 -30.65 16 14 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 15 C 0.00 0.16 5.46 84.65 0.46 0.62 16 16 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 17 Si 0.99 42.81 29.54 68.60 2.03 44.83 16 18 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 19 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 21 H 0.04 1.50 7.15 -2.39 -0.02 1.48 16 22 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.03 1.22 7.07 -2.39 -0.02 1.21 16 24 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.68 7.86 -2.39 -0.02 1.66 16 28 H 0.07 1.06 7.83 -2.38 -0.02 1.04 16 29 H 0.35 6.80 8.92 -89.70 -0.80 6.00 16 30 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.06 1.89 7.47 -2.38 -0.02 1.87 16 32 H 0.40 14.77 8.32 -92.71 -0.77 14.00 16 33 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 34 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 35 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -74.94 285.13 -0.66 -75.60 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -0.49 Total: 21.22 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 3.75 Total: 1.36 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -5.91 Total: -112.02 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.05 Total: -31.00 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -74.94 -0.66 -75.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711383781.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.858 kcal (2) G-P(sol) polarization free energy of solvation -74.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds