Wall clock time and date at job start Mon Mar 30 2020 02:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 119.99940 * 2 1 4 4 H 1.48492 * 109.47526 * 270.00320 * 3 2 1 5 5 H 1.48498 * 109.46901 * 30.00683 * 3 2 1 6 6 H 1.48506 * 109.46943 * 150.00102 * 3 2 1 7 7 C 1.38949 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00280 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99965 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99864 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99815 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.47083 * 60.00009 * 12 10 9 14 14 C 1.52993 * 109.46941 * 299.99690 * 12 10 9 15 15 C 1.53006 * 109.47155 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.46846 * 59.99875 * 15 14 12 17 17 C 1.52993 * 109.47345 * 300.00008 * 16 15 14 18 18 H 1.09002 * 109.47493 * 300.00298 * 17 16 15 19 19 C 1.53000 * 109.47345 * 180.02562 * 17 16 15 20 20 N 1.46901 * 109.46769 * 65.00032 * 19 17 16 21 21 C 1.53000 * 109.46801 * 179.97438 * 12 10 9 22 22 H 0.96998 * 119.99848 * 359.97438 * 1 2 3 23 23 H 0.96998 * 119.99733 * 0.02562 * 9 7 2 24 24 H 1.08996 * 109.47265 * 60.00533 * 14 12 10 25 25 H 1.08993 * 109.47639 * 300.00091 * 14 12 10 26 26 H 1.09002 * 109.46824 * 300.00292 * 15 14 12 27 27 H 1.09001 * 109.47241 * 180.02562 * 15 14 12 28 28 H 1.09002 * 109.46642 * 180.02562 * 16 15 14 29 29 H 1.08993 * 109.46977 * 60.00690 * 16 15 14 30 30 H 1.09002 * 109.47398 * 185.00327 * 19 17 16 31 31 H 1.09001 * 109.47194 * 305.00507 * 19 17 16 32 32 H 1.00908 * 110.99847 * 180.02562 * 20 19 17 33 33 H 1.00899 * 111.00283 * 303.95539 * 20 19 17 34 34 H 1.09002 * 109.47069 * 60.00276 * 21 12 10 35 35 H 1.09001 * 109.47624 * 299.99995 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 1 0.6174 -4.9205 -0.8914 14 6 0.3637 -4.9443 1.2478 15 6 -0.4009 -6.2696 1.2475 16 6 0.5938 -7.4321 1.2479 17 6 1.4738 -7.3508 -0.0010 18 1 0.8475 -7.4088 -0.8912 19 6 2.4681 -8.5138 -0.0010 20 7 1.7375 -9.7825 -0.1222 21 6 2.2380 -6.0259 -0.0016 22 1 -0.4850 0.8400 0.0004 23 1 0.3534 -2.3906 -0.0005 24 1 -0.3446 -4.1158 1.2477 25 1 0.9900 -4.8867 2.1379 26 1 -1.0271 -6.3275 0.3573 27 1 -1.0282 -6.3273 2.1371 28 1 0.0491 -8.3763 1.2473 29 1 1.2200 -7.3742 2.1381 30 1 3.1525 -8.4067 -0.8425 31 1 3.0339 -8.5080 0.9306 32 1 2.3726 -10.5666 -0.1241 33 1 1.0506 -9.8757 0.6109 34 1 2.8646 -5.9685 0.8884 35 1 2.8647 -5.9678 -0.8916 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713856642.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:32 Heat of formation + Delta-G solvation = -72.943016 kcal Electronic energy + Delta-G solvation = -15934.321767 eV Core-core repulsion = 13351.475081 eV Total energy + Delta-G solvation = -2582.846686 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.32120 -37.36427 -34.42097 -33.91485 -31.27593 -30.54743 -29.97125 -25.14411 -24.62606 -22.54161 -21.24327 -19.60973 -18.76363 -17.80892 -16.24835 -15.58917 -15.00784 -14.83649 -14.46130 -14.07830 -13.85113 -13.66108 -13.07387 -12.82990 -12.58578 -12.03459 -11.75563 -11.42291 -11.28638 -11.09184 -10.84600 -10.78236 -10.37421 -10.27983 -10.22462 -10.01605 -9.75580 -9.47829 -8.77788 -8.25406 -7.93099 -6.38907 -3.79500 3.19414 3.27739 3.33766 3.95347 4.19310 4.47352 4.84604 4.87683 4.93674 5.24277 5.27680 5.43185 5.48141 5.57937 5.67173 5.73548 5.81235 5.89024 5.90269 6.06381 6.15824 6.28771 6.36475 6.44468 6.49351 6.64259 6.74442 6.82622 7.05021 7.31902 7.57703 8.09696 8.64864 9.20870 9.59377 10.11024 10.78868 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.057253 B = 0.005762 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.944051 B = 4857.974664 C = 5212.959939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.445 3.555 11 O -0.598 6.598 12 C -0.095 4.095 13 H 0.080 0.920 14 C -0.110 4.110 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.087 4.087 18 H 0.077 0.923 19 C 0.065 3.935 20 N -0.853 5.853 21 C -0.086 4.086 22 H 0.271 0.729 23 H 0.393 0.607 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.337 0.663 33 H 0.338 0.662 34 H 0.065 0.935 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 -13.868 2.211 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.197 5.197 10 C 0.231 3.769 11 O -0.483 6.483 12 C -0.117 4.117 13 H 0.098 0.902 14 C -0.148 4.148 15 C -0.153 4.153 16 C -0.152 4.152 17 C -0.106 4.106 18 H 0.095 0.905 19 C -0.065 4.065 20 N -0.382 5.382 21 C -0.124 4.124 22 H 0.081 0.919 23 H 0.226 0.774 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.083 0.917 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.308 -13.396 1.511 13.544 hybrid contribution 0.186 0.723 0.923 1.187 sum -1.122 -12.673 2.433 12.953 Atomic orbital electron populations 1.69614 1.05923 1.28097 1.50681 1.25252 0.95615 0.99675 0.97368 0.85874 0.79237 0.80895 0.78379 1.20416 1.20935 1.19456 1.19727 0.93372 0.82428 1.47510 0.88018 1.41915 1.09223 1.04643 1.63946 1.19945 0.88132 0.84963 0.83857 1.90499 1.14097 1.87444 1.56284 1.21120 0.97270 0.94276 0.99030 0.90197 1.21532 0.98315 0.97278 0.97679 1.21514 0.97549 0.94582 1.01660 1.21598 0.97692 0.98019 0.97866 1.21221 0.96628 0.93994 0.98781 0.90500 1.21844 0.95560 0.89178 0.99949 1.58787 1.20109 1.04169 1.55171 1.21232 0.96884 0.91283 1.03035 0.91904 0.77384 0.91356 0.91836 0.91905 0.92177 0.92393 0.92368 0.90982 0.95585 0.85132 0.84874 0.91658 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.57 5.18 -10.96 -0.06 -14.63 16 10 C 0.44 10.78 7.11 -10.98 -0.08 10.70 16 11 O -0.60 -16.59 15.56 5.55 0.09 -16.51 16 12 C -0.10 -1.73 2.53 -91.77 -0.23 -1.96 16 13 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 14 C -0.11 -1.76 5.10 -26.73 -0.14 -1.89 16 15 C -0.12 -1.46 5.92 -26.73 -0.16 -1.61 16 16 C -0.11 -1.33 4.98 -26.73 -0.13 -1.47 16 17 C -0.09 -1.13 2.39 -90.65 -0.22 -1.34 16 18 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 19 C 0.07 0.75 6.25 -3.82 -0.02 0.73 16 20 N -0.85 -8.39 9.62 -10.37 -0.10 -8.49 16 21 C -0.09 -1.41 3.77 -26.75 -0.10 -1.51 16 22 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 23 H 0.39 9.77 7.32 -40.82 -0.30 9.47 16 24 H 0.07 1.13 7.56 -51.93 -0.39 0.74 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.58 6.68 -51.93 -0.35 0.23 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.34 2.70 9.08 -39.29 -0.36 2.34 16 33 H 0.34 2.96 7.24 -39.29 -0.28 2.67 16 34 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 35 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 282.19 15.07 4.25 4.25 Total: -1.00 -30.85 282.19 -6.85 -37.70 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.41 Total: 12.05 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -1.32 Total: -6.54 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.57 Total: -47.23 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.09 Total: -16.51 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.85 -6.85 -37.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713856642.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.245 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds