Wall clock time and date at job start Mon Mar 30 2020 02:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 119.99940 * 2 1 4 4 H 1.48492 * 109.47526 * 270.00320 * 3 2 1 5 5 H 1.48498 * 109.46901 * 30.00683 * 3 2 1 6 6 H 1.48506 * 109.46943 * 150.00102 * 3 2 1 7 7 C 1.38949 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00280 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99965 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99864 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99815 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.47083 * 60.00009 * 12 10 9 14 14 C 1.52993 * 109.46941 * 299.99690 * 12 10 9 15 15 C 1.53006 * 109.47155 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.46846 * 59.99875 * 15 14 12 17 17 C 1.52993 * 109.47345 * 300.00008 * 16 15 14 18 18 H 1.09002 * 109.47493 * 300.00298 * 17 16 15 19 19 C 1.53000 * 109.47345 * 180.02562 * 17 16 15 20 20 N 1.46901 * 109.46769 * 65.00032 * 19 17 16 21 21 C 1.53000 * 109.46801 * 179.97438 * 12 10 9 22 22 H 0.96998 * 119.99848 * 359.97438 * 1 2 3 23 23 H 0.96998 * 119.99733 * 0.02562 * 9 7 2 24 24 H 1.08996 * 109.47265 * 60.00533 * 14 12 10 25 25 H 1.08993 * 109.47639 * 300.00091 * 14 12 10 26 26 H 1.09002 * 109.46824 * 300.00292 * 15 14 12 27 27 H 1.09001 * 109.47241 * 180.02562 * 15 14 12 28 28 H 1.09002 * 109.46642 * 180.02562 * 16 15 14 29 29 H 1.08993 * 109.46977 * 60.00690 * 16 15 14 30 30 H 1.09002 * 109.47398 * 185.00327 * 19 17 16 31 31 H 1.09001 * 109.47194 * 305.00507 * 19 17 16 32 32 H 1.00908 * 110.99847 * 180.02562 * 20 19 17 33 33 H 1.00899 * 111.00283 * 303.95539 * 20 19 17 34 34 H 1.09002 * 109.47069 * 60.00276 * 21 12 10 35 35 H 1.09001 * 109.47624 * 299.99995 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 1 0.6174 -4.9205 -0.8914 14 6 0.3637 -4.9443 1.2478 15 6 -0.4009 -6.2696 1.2475 16 6 0.5938 -7.4321 1.2479 17 6 1.4738 -7.3508 -0.0010 18 1 0.8475 -7.4088 -0.8912 19 6 2.4681 -8.5138 -0.0010 20 7 1.7375 -9.7825 -0.1222 21 6 2.2380 -6.0259 -0.0016 22 1 -0.4850 0.8400 0.0004 23 1 0.3534 -2.3906 -0.0005 24 1 -0.3446 -4.1158 1.2477 25 1 0.9900 -4.8867 2.1379 26 1 -1.0271 -6.3275 0.3573 27 1 -1.0282 -6.3273 2.1371 28 1 0.0491 -8.3763 1.2473 29 1 1.2200 -7.3742 2.1381 30 1 3.1525 -8.4067 -0.8425 31 1 3.0339 -8.5080 0.9306 32 1 2.3726 -10.5666 -0.1241 33 1 1.0506 -9.8757 0.6109 34 1 2.8646 -5.9685 0.8884 35 1 2.8647 -5.9678 -0.8916 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713856642.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:32 Heat of formation + Delta-G solvation = -95.329148 kcal Electronic energy + Delta-G solvation = -15935.292502 eV Core-core repulsion = 13351.475081 eV Total energy + Delta-G solvation = -2583.817421 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.88187 -38.92217 -36.02485 -35.46418 -33.29367 -31.80112 -31.17633 -27.13631 -25.67658 -24.01423 -22.44746 -20.81278 -20.53314 -19.84654 -17.74048 -16.92552 -16.50378 -16.14229 -15.98603 -15.76786 -15.28605 -14.89380 -14.52361 -14.20621 -13.91706 -13.59555 -13.37452 -12.94574 -12.80498 -12.51670 -12.38900 -12.13287 -12.10675 -11.95497 -11.53285 -11.40193 -11.30974 -10.92709 -10.22505 -10.03482 -9.56054 -8.48604 -5.98022 1.36376 1.39932 1.53066 2.02886 2.28682 3.14825 3.18705 3.65031 3.81127 3.85208 3.96847 4.21689 4.31670 4.39733 4.48675 4.56839 4.61154 4.69231 4.72111 4.86358 4.97050 5.14397 5.21844 5.27837 5.32111 5.35855 5.40535 5.44350 5.60175 5.98361 6.27593 6.56886 6.66683 7.09678 7.54007 8.09276 8.68813 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.057253 B = 0.005762 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.944051 B = 4857.974664 C = 5212.959939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.339 4.339 8 H 0.077 0.923 9 N -0.569 5.569 10 C 0.438 3.562 11 O -0.639 6.639 12 C -0.087 4.087 13 H 0.094 0.906 14 C -0.106 4.106 15 C -0.108 4.108 16 C -0.110 4.110 17 C -0.078 4.078 18 H 0.077 0.923 19 C 0.070 3.930 20 N -0.853 5.853 21 C -0.080 4.080 22 H 0.279 0.721 23 H 0.396 0.604 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.349 0.651 33 H 0.347 0.653 34 H 0.048 0.952 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.914 -14.857 2.500 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.469 4.469 8 H 0.095 0.905 9 N -0.205 5.205 10 C 0.226 3.774 11 O -0.527 6.527 12 C -0.108 4.108 13 H 0.112 0.888 14 C -0.144 4.144 15 C -0.146 4.146 16 C -0.148 4.148 17 C -0.097 4.097 18 H 0.095 0.905 19 C -0.061 4.061 20 N -0.385 5.385 21 C -0.119 4.119 22 H 0.088 0.912 23 H 0.230 0.770 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.067 0.933 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.507 -14.409 1.802 14.736 hybrid contribution 0.560 1.021 0.821 1.425 sum -1.947 -13.387 2.623 13.780 Atomic orbital electron populations 1.69674 1.06856 1.29387 1.50057 1.26058 0.96556 1.02424 0.96072 0.84922 0.77874 0.76773 0.78723 1.19542 1.19308 1.19822 1.19706 0.92705 0.84226 1.50252 0.90475 1.41983 1.09311 1.04751 1.64445 1.21071 0.88034 0.86477 0.81785 1.90460 1.16220 1.88328 1.57681 1.21129 0.97526 0.91207 1.00957 0.88780 1.21503 0.97756 0.99476 0.95653 1.21493 0.97530 0.92398 1.03167 1.21593 0.97378 0.98909 0.96877 1.21110 0.96649 0.92220 0.99675 0.90472 1.21698 0.95140 0.89518 0.99778 1.58726 1.20434 1.03764 1.55601 1.21175 0.96480 0.92822 1.01384 0.91193 0.76966 0.92270 0.93059 0.90918 0.90151 0.89602 0.92442 0.91811 0.95389 0.83781 0.83888 0.93282 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.39 13.05 21.66 0.28 -50.11 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.34 -19.87 9.68 84.04 0.81 -19.05 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.57 -30.43 5.18 -306.98 -1.59 -32.02 16 10 C 0.44 21.95 7.11 87.66 0.62 22.57 16 11 O -0.64 -37.04 15.56 -3.07 -0.05 -37.09 16 12 C -0.09 -3.17 2.53 -11.54 -0.03 -3.20 16 13 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 14 C -0.11 -3.30 5.10 30.59 0.16 -3.15 16 15 C -0.11 -2.43 5.92 30.60 0.18 -2.25 16 16 C -0.11 -2.24 4.98 30.59 0.15 -2.09 16 17 C -0.08 -1.86 2.39 -10.81 -0.03 -1.89 16 18 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 19 C 0.07 1.47 6.25 86.30 0.54 2.01 16 20 N -0.85 -14.42 9.62 -186.71 -1.80 -16.21 16 21 C -0.08 -2.63 3.77 30.58 0.12 -2.52 16 22 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 23 H 0.40 20.17 7.32 -92.71 -0.68 19.50 16 24 H 0.06 1.94 7.56 -2.39 -0.02 1.92 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.34 6.68 -2.39 -0.02 1.32 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.35 4.66 9.08 -89.69 -0.81 3.85 16 33 H 0.35 4.85 7.24 -89.69 -0.65 4.20 16 34 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 35 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -67.39 282.19 0.83 -66.56 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -1.04 Total: 32.96 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 2.99 Total: -9.70 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -3.10 Total: -98.34 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.05 Total: -37.09 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -67.39 0.83 -66.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713856642.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.769 kcal (2) G-P(sol) polarization free energy of solvation -67.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds