Wall clock time and date at job start Mon Mar 30 2020 02:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 119.99804 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99941 * 3 2 1 5 5 H 1.48503 * 109.47261 * 120.00122 * 3 2 1 6 6 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 7 7 C 1.38950 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99613 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99824 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99695 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00009 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00201 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.47210 * 300.00401 * 12 10 9 14 14 C 1.53002 * 109.46976 * 60.00298 * 12 10 9 15 15 C 1.52996 * 109.47340 * 59.99701 * 14 12 10 16 16 C 1.53005 * 109.46543 * 60.00393 * 15 14 12 17 17 C 1.52999 * 109.47159 * 299.99504 * 16 15 14 18 18 H 1.09000 * 109.47486 * 300.00537 * 17 16 15 19 19 C 1.52997 * 109.47269 * 180.02562 * 17 16 15 20 20 N 1.46897 * 109.47313 * 65.00222 * 19 17 16 21 21 C 1.52997 * 109.47342 * 180.02562 * 12 10 9 22 22 H 0.97001 * 119.99677 * 179.97438 * 1 2 3 23 23 H 0.96991 * 120.00558 * 0.02562 * 9 7 2 24 24 H 1.08995 * 109.47208 * 180.02562 * 14 12 10 25 25 H 1.09004 * 109.46930 * 300.00098 * 14 12 10 26 26 H 1.09000 * 109.47196 * 300.00411 * 15 14 12 27 27 H 1.09001 * 109.47364 * 179.97438 * 15 14 12 28 28 H 1.09002 * 109.46935 * 180.02562 * 16 15 14 29 29 H 1.09000 * 109.47360 * 60.00118 * 16 15 14 30 30 H 1.09004 * 109.47610 * 185.00362 * 19 17 16 31 31 H 1.09001 * 109.47096 * 305.00429 * 19 17 16 32 32 H 1.00896 * 111.00388 * 180.02562 * 20 19 17 33 33 H 1.00903 * 110.99895 * 303.95978 * 20 19 17 34 34 H 1.09001 * 109.47375 * 60.00270 * 21 12 10 35 35 H 1.09000 * 109.47140 * 180.02562 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 3.1018 1.6965 1.2125 6 1 1.2831 2.7465 0.0006 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 1 0.6168 -4.9209 0.8886 14 6 0.3647 -4.9437 -1.2508 15 6 1.2448 -4.8623 -2.4996 16 6 2.2391 -6.0253 -2.4994 17 6 3.1182 -5.9445 -1.2498 18 1 3.6632 -5.0005 -1.2494 19 6 4.1128 -7.1070 -1.2499 20 7 5.0353 -6.9622 -2.3840 21 6 2.2381 -6.0258 -0.0004 22 1 -0.4850 -0.8401 -0.0004 23 1 0.3534 -2.3906 -0.0005 24 1 -0.1805 -5.8875 -1.2510 25 1 -0.3436 -4.1152 -1.2509 26 1 1.7898 -3.9183 -2.4991 27 1 0.6186 -4.9203 -3.3899 28 1 2.8664 -5.9671 -3.3889 29 1 1.6941 -6.9693 -2.4999 30 1 4.6787 -7.1013 -0.3183 31 1 3.5712 -8.0486 -1.3402 32 1 5.7024 -7.7188 -2.4063 33 1 4.5302 -6.9000 -3.2553 34 1 2.8640 -5.9681 0.8901 35 1 1.6931 -6.9698 -0.0012 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713856645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:34 Heat of formation + Delta-G solvation = -88.297467 kcal Electronic energy + Delta-G solvation = -16455.660178 eV Core-core repulsion = 13872.147673 eV Total energy + Delta-G solvation = -2583.512505 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.27782 -38.60077 -36.29799 -35.52324 -33.11846 -31.84051 -31.09491 -26.84516 -25.70875 -24.03787 -22.76091 -21.34903 -20.36778 -19.87246 -17.55572 -17.19213 -16.72077 -16.30740 -15.76537 -15.62522 -15.42453 -14.98980 -14.60488 -14.20405 -13.89755 -13.36298 -13.05541 -12.98964 -12.79264 -12.75020 -12.38121 -11.93776 -11.92928 -11.88674 -11.66776 -11.29659 -11.03840 -10.92078 -10.11880 -10.00109 -9.52206 -8.91451 -6.03920 1.52164 1.52419 1.80515 2.07259 2.42539 3.08479 3.18562 3.63705 3.79400 3.81653 3.91744 4.14420 4.28841 4.36955 4.49685 4.54945 4.60582 4.67911 4.70115 4.84889 4.92659 5.01598 5.03372 5.26018 5.31783 5.33949 5.50926 5.62351 5.81588 5.98426 6.31115 6.60362 6.65840 6.80348 7.49313 8.00296 8.56317 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037562 B = 0.007371 C = 0.006857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.256827 B = 3797.958077 C = 4082.471030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.044 4.044 3 Si 1.131 2.869 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.408 4.408 8 H 0.070 0.930 9 N -0.588 5.588 10 C 0.453 3.547 11 O -0.617 6.617 12 C -0.099 4.099 13 H 0.098 0.902 14 C -0.102 4.102 15 C -0.121 4.121 16 C -0.102 4.102 17 C -0.103 4.103 18 H 0.061 0.939 19 C 0.077 3.923 20 N -0.865 5.865 21 C -0.081 4.081 22 H 0.258 0.742 23 H 0.381 0.619 24 H 0.105 0.895 25 H 0.053 0.947 26 H 0.018 0.982 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.349 0.651 33 H 0.344 0.656 34 H 0.046 0.954 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 -14.386 -4.048 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.241 4.241 3 Si 0.951 3.049 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.538 4.538 8 H 0.088 0.912 9 N -0.226 5.226 10 C 0.241 3.759 11 O -0.504 6.504 12 C -0.120 4.120 13 H 0.116 0.884 14 C -0.140 4.140 15 C -0.159 4.159 16 C -0.139 4.139 17 C -0.121 4.121 18 H 0.080 0.920 19 C -0.053 4.053 20 N -0.397 5.397 21 C -0.119 4.119 22 H 0.068 0.932 23 H 0.215 0.785 24 H 0.124 0.876 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.064 0.936 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.722 -12.045 -3.691 12.618 hybrid contribution -0.556 -2.137 -0.124 2.211 sum 0.165 -14.181 -3.815 14.686 Atomic orbital electron populations 1.70970 1.06926 1.29318 1.48551 1.27759 0.96720 1.05228 0.94435 0.82663 0.73846 0.70554 0.77813 1.20029 1.19903 1.19549 1.20504 0.93746 0.85964 1.53572 0.91234 1.42027 1.08376 1.05527 1.66683 1.20921 0.88111 0.85997 0.80831 1.90448 1.15978 1.87817 1.56140 1.21299 0.97884 0.91920 1.00918 0.88400 1.21515 0.96630 1.03440 0.92372 1.21514 0.97959 0.97972 0.98435 1.21511 0.96828 0.98388 0.97169 1.21366 0.96055 0.99773 0.94946 0.92045 1.21680 0.93381 0.96232 0.94043 1.58618 1.21284 1.53216 1.06567 1.21238 0.96304 0.96666 0.97666 0.93160 0.78461 0.87619 0.92793 0.96279 0.90266 0.92126 0.89707 0.92611 0.93593 0.83754 0.84150 0.93561 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.56 13.68 21.66 0.30 -52.27 16 2 C -0.04 -2.44 5.50 84.93 0.47 -1.97 16 3 Si 1.13 50.16 29.92 68.60 2.05 52.21 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.41 -24.11 9.68 84.04 0.81 -23.30 16 8 H 0.07 4.42 7.16 -2.91 -0.02 4.40 16 9 N -0.59 -30.83 5.18 -306.98 -1.59 -32.42 16 10 C 0.45 21.92 5.59 87.66 0.49 22.41 16 11 O -0.62 -34.80 13.23 -3.07 -0.04 -34.85 16 12 C -0.10 -3.40 3.01 -11.54 -0.03 -3.43 16 13 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 14 C -0.10 -2.94 5.36 30.59 0.16 -2.78 16 15 C -0.12 -3.75 5.70 30.59 0.17 -3.58 16 16 C -0.10 -2.70 4.98 30.60 0.15 -2.54 16 17 C -0.10 -3.28 2.10 -10.78 -0.02 -3.30 16 18 H 0.06 2.73 5.51 -2.39 -0.01 2.72 16 19 C 0.08 2.00 6.25 86.30 0.54 2.54 16 20 N -0.86 -21.26 9.62 -186.72 -1.80 -23.06 16 21 C -0.08 -2.45 4.38 30.61 0.13 -2.31 16 22 H 0.26 14.32 6.77 -92.71 -0.63 13.69 16 23 H 0.38 18.63 6.15 -92.71 -0.57 18.06 16 24 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.05 1.65 7.57 -2.38 -0.02 1.64 16 26 H 0.02 0.77 7.22 -2.39 -0.02 0.75 16 27 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.06 1.55 6.68 -2.39 -0.02 1.54 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 32 H 0.35 6.64 9.08 -89.70 -0.81 5.83 16 33 H 0.34 7.55 7.24 -89.69 -0.65 6.90 16 34 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 35 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -71.73 273.96 1.02 -70.72 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -0.78 Total: 37.92 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 2.88 Total: -18.26 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -3.09 Total: -107.74 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.04 Total: -34.85 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 2.05 Total: 52.21 kcal Total: -71.73 1.02 -70.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713856645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.582 kcal (2) G-P(sol) polarization free energy of solvation -71.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds