Wall clock time and date at job start Mon Mar 30 2020 02:46:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31411 * 1
3 3 Si 1.86798 * 119.99804 * 2 1
4 4 H 1.48506 * 109.47297 * 239.99941 * 3 2 1
5 5 H 1.48503 * 109.47261 * 120.00122 * 3 2 1
6 6 H 1.48500 * 109.47454 * 0.02562 * 3 2 1
7 7 C 1.38950 * 119.99961 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99613 * 180.02562 * 7 2 1
9 9 N 1.37094 * 119.99824 * 359.97438 * 7 2 1
10 10 C 1.34779 * 119.99695 * 180.02562 * 9 7 2
11 11 O 1.21295 * 120.00009 * 0.02562 * 10 9 7
12 12 C 1.50698 * 120.00201 * 180.02562 * 10 9 7
13 13 H 1.09002 * 109.47210 * 300.00401 * 12 10 9
14 14 C 1.53002 * 109.46976 * 60.00298 * 12 10 9
15 15 C 1.52996 * 109.47340 * 59.99701 * 14 12 10
16 16 C 1.53005 * 109.46543 * 60.00393 * 15 14 12
17 17 C 1.52999 * 109.47159 * 299.99504 * 16 15 14
18 18 H 1.09000 * 109.47486 * 300.00537 * 17 16 15
19 19 C 1.52997 * 109.47269 * 180.02562 * 17 16 15
20 20 N 1.46897 * 109.47313 * 65.00222 * 19 17 16
21 21 C 1.52997 * 109.47342 * 180.02562 * 12 10 9
22 22 H 0.97001 * 119.99677 * 179.97438 * 1 2 3
23 23 H 0.96991 * 120.00558 * 0.02562 * 9 7 2
24 24 H 1.08995 * 109.47208 * 180.02562 * 14 12 10
25 25 H 1.09004 * 109.46930 * 300.00098 * 14 12 10
26 26 H 1.09000 * 109.47196 * 300.00411 * 15 14 12
27 27 H 1.09001 * 109.47364 * 179.97438 * 15 14 12
28 28 H 1.09002 * 109.46935 * 180.02562 * 16 15 14
29 29 H 1.09000 * 109.47360 * 60.00118 * 16 15 14
30 30 H 1.09004 * 109.47610 * 185.00362 * 19 17 16
31 31 H 1.09001 * 109.47096 * 305.00429 * 19 17 16
32 32 H 1.00896 * 111.00388 * 180.02562 * 20 19 17
33 33 H 1.00903 * 110.99895 * 303.95978 * 20 19 17
34 34 H 1.09001 * 109.47375 * 60.00270 * 21 12 10
35 35 H 1.09000 * 109.47140 * 180.02562 * 21 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6178 0.0000
4 1 3.1018 1.6965 -1.2125
5 1 3.1018 1.6965 1.2125
6 1 1.2831 2.7465 0.0006
7 6 2.0088 -1.2033 -0.0005
8 1 3.0889 -1.2033 -0.0001
9 7 1.3233 -2.3906 -0.0005
10 6 1.9972 -3.5578 -0.0005
11 8 3.2102 -3.5578 -0.0001
12 6 1.2438 -4.8629 -0.0011
13 1 0.6168 -4.9209 0.8886
14 6 0.3647 -4.9437 -1.2508
15 6 1.2448 -4.8623 -2.4996
16 6 2.2391 -6.0253 -2.4994
17 6 3.1182 -5.9445 -1.2498
18 1 3.6632 -5.0005 -1.2494
19 6 4.1128 -7.1070 -1.2499
20 7 5.0353 -6.9622 -2.3840
21 6 2.2381 -6.0258 -0.0004
22 1 -0.4850 -0.8401 -0.0004
23 1 0.3534 -2.3906 -0.0005
24 1 -0.1805 -5.8875 -1.2510
25 1 -0.3436 -4.1152 -1.2509
26 1 1.7898 -3.9183 -2.4991
27 1 0.6186 -4.9203 -3.3899
28 1 2.8664 -5.9671 -3.3889
29 1 1.6941 -6.9693 -2.4999
30 1 4.6787 -7.1013 -0.3183
31 1 3.5712 -8.0486 -1.3402
32 1 5.7024 -7.7188 -2.4063
33 1 4.5302 -6.9000 -3.2553
34 1 2.8640 -5.9681 0.8901
35 1 1.6931 -6.9698 -0.0012
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000713856645.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:46:34
Heat of formation + Delta-G solvation = -88.297467 kcal
Electronic energy + Delta-G solvation = -16455.660178 eV
Core-core repulsion = 13872.147673 eV
Total energy + Delta-G solvation = -2583.512505 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.27782 -38.60077 -36.29799 -35.52324 -33.11846 -31.84051 -31.09491 -26.84516
-25.70875 -24.03787 -22.76091 -21.34903 -20.36778 -19.87246 -17.55572 -17.19213
-16.72077 -16.30740 -15.76537 -15.62522 -15.42453 -14.98980 -14.60488 -14.20405
-13.89755 -13.36298 -13.05541 -12.98964 -12.79264 -12.75020 -12.38121 -11.93776
-11.92928 -11.88674 -11.66776 -11.29659 -11.03840 -10.92078 -10.11880 -10.00109
-9.52206 -8.91451 -6.03920 1.52164 1.52419 1.80515 2.07259 2.42539
3.08479 3.18562 3.63705 3.79400 3.81653 3.91744 4.14420 4.28841
4.36955 4.49685 4.54945 4.60582 4.67911 4.70115 4.84889 4.92659
5.01598 5.03372 5.26018 5.31783 5.33949 5.50926 5.62351 5.81588
5.98426 6.31115 6.60362 6.65840 6.80348 7.49313 8.00296 8.56317
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.037562 B = 0.007371 C = 0.006857
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 745.256827 B = 3797.958077 C = 4082.471030
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C -0.044 4.044
3 Si 1.131 2.869
4 H -0.275 1.275
5 H -0.274 1.274
6 H -0.271 1.271
7 C -0.408 4.408
8 H 0.070 0.930
9 N -0.588 5.588
10 C 0.453 3.547
11 O -0.617 6.617
12 C -0.099 4.099
13 H 0.098 0.902
14 C -0.102 4.102
15 C -0.121 4.121
16 C -0.102 4.102
17 C -0.103 4.103
18 H 0.061 0.939
19 C 0.077 3.923
20 N -0.865 5.865
21 C -0.081 4.081
22 H 0.258 0.742
23 H 0.381 0.619
24 H 0.105 0.895
25 H 0.053 0.947
26 H 0.018 0.982
27 H 0.079 0.921
28 H 0.060 0.940
29 H 0.084 0.916
30 H 0.055 0.945
31 H 0.046 0.954
32 H 0.349 0.651
33 H 0.344 0.656
34 H 0.046 0.954
35 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.125 -14.386 -4.048 14.945
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.558 5.558
2 C -0.241 4.241
3 Si 0.951 3.049
4 H -0.200 1.200
5 H -0.199 1.199
6 H -0.195 1.195
7 C -0.538 4.538
8 H 0.088 0.912
9 N -0.226 5.226
10 C 0.241 3.759
11 O -0.504 6.504
12 C -0.120 4.120
13 H 0.116 0.884
14 C -0.140 4.140
15 C -0.159 4.159
16 C -0.139 4.139
17 C -0.121 4.121
18 H 0.080 0.920
19 C -0.053 4.053
20 N -0.397 5.397
21 C -0.119 4.119
22 H 0.068 0.932
23 H 0.215 0.785
24 H 0.124 0.876
25 H 0.072 0.928
26 H 0.037 0.963
27 H 0.097 0.903
28 H 0.079 0.921
29 H 0.103 0.897
30 H 0.074 0.926
31 H 0.064 0.936
32 H 0.162 0.838
33 H 0.159 0.841
34 H 0.064 0.936
35 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 0.722 -12.045 -3.691 12.618
hybrid contribution -0.556 -2.137 -0.124 2.211
sum 0.165 -14.181 -3.815 14.686
Atomic orbital electron populations
1.70970 1.06926 1.29318 1.48551 1.27759 0.96720 1.05228 0.94435
0.82663 0.73846 0.70554 0.77813 1.20029 1.19903 1.19549 1.20504
0.93746 0.85964 1.53572 0.91234 1.42027 1.08376 1.05527 1.66683
1.20921 0.88111 0.85997 0.80831 1.90448 1.15978 1.87817 1.56140
1.21299 0.97884 0.91920 1.00918 0.88400 1.21515 0.96630 1.03440
0.92372 1.21514 0.97959 0.97972 0.98435 1.21511 0.96828 0.98388
0.97169 1.21366 0.96055 0.99773 0.94946 0.92045 1.21680 0.93381
0.96232 0.94043 1.58618 1.21284 1.53216 1.06567 1.21238 0.96304
0.96666 0.97666 0.93160 0.78461 0.87619 0.92793 0.96279 0.90266
0.92126 0.89707 0.92611 0.93593 0.83754 0.84150 0.93561 0.88547
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -52.56 13.68 21.66 0.30 -52.27 16
2 C -0.04 -2.44 5.50 84.93 0.47 -1.97 16
3 Si 1.13 50.16 29.92 68.60 2.05 52.21 16
4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16
5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16
6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16
7 C -0.41 -24.11 9.68 84.04 0.81 -23.30 16
8 H 0.07 4.42 7.16 -2.91 -0.02 4.40 16
9 N -0.59 -30.83 5.18 -306.98 -1.59 -32.42 16
10 C 0.45 21.92 5.59 87.66 0.49 22.41 16
11 O -0.62 -34.80 13.23 -3.07 -0.04 -34.85 16
12 C -0.10 -3.40 3.01 -11.54 -0.03 -3.43 16
13 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16
14 C -0.10 -2.94 5.36 30.59 0.16 -2.78 16
15 C -0.12 -3.75 5.70 30.59 0.17 -3.58 16
16 C -0.10 -2.70 4.98 30.60 0.15 -2.54 16
17 C -0.10 -3.28 2.10 -10.78 -0.02 -3.30 16
18 H 0.06 2.73 5.51 -2.39 -0.01 2.72 16
19 C 0.08 2.00 6.25 86.30 0.54 2.54 16
20 N -0.86 -21.26 9.62 -186.72 -1.80 -23.06 16
21 C -0.08 -2.45 4.38 30.61 0.13 -2.31 16
22 H 0.26 14.32 6.77 -92.71 -0.63 13.69 16
23 H 0.38 18.63 6.15 -92.71 -0.57 18.06 16
24 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16
25 H 0.05 1.65 7.57 -2.38 -0.02 1.64 16
26 H 0.02 0.77 7.22 -2.39 -0.02 0.75 16
27 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16
28 H 0.06 1.55 6.68 -2.39 -0.02 1.54 16
29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
31 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16
32 H 0.35 6.64 9.08 -89.70 -0.81 5.83 16
33 H 0.34 7.55 7.24 -89.69 -0.65 6.90 16
34 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16
35 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16
Total: -1.00 -71.73 273.96 1.02 -70.72
By element:
Atomic # 1 Polarization: 38.70 SS G_CDS: -0.78 Total: 37.92 kcal
Atomic # 6 Polarization: -21.13 SS G_CDS: 2.88 Total: -18.26 kcal
Atomic # 7 Polarization: -104.65 SS G_CDS: -3.09 Total: -107.74 kcal
Atomic # 8 Polarization: -34.80 SS G_CDS: -0.04 Total: -34.85 kcal
Atomic # 14 Polarization: 50.16 SS G_CDS: 2.05 Total: 52.21 kcal
Total: -71.73 1.02 -70.72 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000713856645.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.582 kcal
(2) G-P(sol) polarization free energy of solvation -71.733 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.315 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.715 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.297 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds