Wall clock time and date at job start Mon Mar 30 2020 02:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 119.99804 * 2 1 4 4 H 1.48502 * 109.47245 * 269.99987 * 3 2 1 5 5 H 1.48494 * 109.47271 * 30.00123 * 3 2 1 6 6 H 1.48510 * 109.46866 * 150.00202 * 3 2 1 7 7 C 1.38951 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99719 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.34770 * 119.99662 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00191 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00019 * 179.97438 * 10 9 7 13 13 H 1.09001 * 109.47122 * 60.00417 * 12 10 9 14 14 C 1.53006 * 109.47184 * 300.00531 * 12 10 9 15 15 C 1.52999 * 109.46626 * 299.99369 * 14 12 10 16 16 C 1.52997 * 109.47592 * 300.00035 * 15 14 12 17 17 C 1.52996 * 109.47165 * 60.00300 * 16 15 14 18 18 H 1.08996 * 109.47134 * 59.99508 * 17 16 15 19 19 C 1.52995 * 109.47577 * 180.02562 * 17 16 15 20 20 N 1.46909 * 109.46768 * 294.99868 * 19 17 16 21 21 C 1.52997 * 109.47342 * 180.02562 * 12 10 9 22 22 H 0.96998 * 120.00134 * 359.97438 * 1 2 3 23 23 H 0.96992 * 119.99820 * 359.97438 * 9 7 2 24 24 H 1.08993 * 109.46955 * 59.99842 * 14 12 10 25 25 H 1.09000 * 109.47050 * 179.97438 * 14 12 10 26 26 H 1.09000 * 109.47160 * 60.00369 * 15 14 12 27 27 H 1.09002 * 109.46719 * 180.02562 * 15 14 12 28 28 H 1.09000 * 109.47140 * 300.00346 * 16 15 14 29 29 H 1.09001 * 109.47375 * 180.02562 * 16 15 14 30 30 H 1.08998 * 109.47220 * 54.99171 * 19 17 16 31 31 H 1.08991 * 109.47712 * 174.99863 * 19 17 16 32 32 H 1.00899 * 110.99934 * 179.97438 * 20 19 17 33 33 H 1.00898 * 110.99719 * 303.95266 * 20 19 17 34 34 H 1.09000 * 109.47140 * 180.02562 * 21 12 10 35 35 H 1.09001 * 109.47230 * 299.99432 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 1 0.6169 -4.9209 -0.8887 14 6 0.3645 -4.9437 1.2507 15 6 1.2447 -4.8624 2.4996 16 6 2.2389 -6.0253 2.4995 17 6 3.1181 -5.9445 1.2500 18 1 3.6630 -5.0006 1.2496 19 6 4.1119 -7.1077 1.2496 20 7 5.0345 -6.9640 2.3838 21 6 2.2381 -6.0258 0.0016 22 1 -0.4850 0.8400 0.0004 23 1 0.3534 -2.3906 0.0005 24 1 -0.3437 -4.1153 1.2507 25 1 -0.1807 -5.8875 1.2509 26 1 1.7896 -3.9184 2.4992 27 1 0.6183 -4.9204 3.3898 28 1 1.6939 -6.9693 2.4999 29 1 2.8656 -5.9676 3.3895 30 1 3.5697 -8.0490 1.3394 31 1 4.6778 -7.1019 0.3181 32 1 5.7012 -7.7210 2.4058 33 1 5.5022 -6.0704 2.3584 34 1 1.6931 -6.9698 0.0016 35 1 2.8647 -5.9685 -0.8884 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713856649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:37 Heat of formation + Delta-G solvation = -67.396982 kcal Electronic energy + Delta-G solvation = -16413.626219 eV Core-core repulsion = 13831.020028 eV Total energy + Delta-G solvation = -2582.606192 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.53095 -36.78344 -34.20530 -33.89568 -31.28742 -30.33268 -29.78415 -25.11562 -24.30136 -22.37750 -21.11391 -19.97971 -18.41474 -17.61719 -15.96398 -15.42284 -14.76826 -14.43553 -14.32998 -14.12316 -14.01528 -13.63053 -12.85075 -12.65010 -12.04303 -11.69742 -11.55426 -11.43653 -11.37225 -11.15900 -11.06175 -10.42500 -10.38351 -10.19500 -10.06004 -9.62658 -9.56532 -9.39321 -8.48659 -8.13268 -7.89932 -6.38781 -3.79192 3.18877 3.27365 3.33067 3.96727 4.19874 4.76211 4.95302 5.13856 5.21510 5.34092 5.44410 5.60273 5.68280 5.81353 5.90492 5.97921 6.04722 6.06682 6.15292 6.21442 6.33536 6.44339 6.53529 6.69237 6.77749 6.81581 6.87242 7.17643 7.31231 7.57625 7.59468 8.10208 8.65752 9.21351 9.60230 10.11957 10.78998 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037437 B = 0.007355 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.744701 B = 3805.865624 C = 4098.801455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.451 3.549 11 O -0.593 6.593 12 C -0.102 4.102 13 H 0.078 0.922 14 C -0.107 4.107 15 C -0.122 4.122 16 C -0.098 4.098 17 C -0.100 4.100 18 H 0.109 0.891 19 C 0.069 3.931 20 N -0.850 5.850 21 C -0.083 4.083 22 H 0.271 0.729 23 H 0.392 0.608 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.022 0.978 32 H 0.332 0.668 33 H 0.342 0.658 34 H 0.053 0.947 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 -10.869 2.441 11.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.755 3.245 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.197 5.197 10 C 0.238 3.762 11 O -0.479 6.479 12 C -0.124 4.124 13 H 0.096 0.904 14 C -0.145 4.145 15 C -0.160 4.160 16 C -0.136 4.136 17 C -0.118 4.118 18 H 0.127 0.873 19 C -0.062 4.062 20 N -0.379 5.379 21 C -0.121 4.121 22 H 0.081 0.919 23 H 0.225 0.775 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.144 0.856 33 H 0.155 0.845 34 H 0.072 0.928 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.668 -10.753 2.894 11.260 hybrid contribution 0.429 0.948 -0.845 1.340 sum 2.097 -9.805 2.049 10.234 Atomic orbital electron populations 1.69612 1.05913 1.28065 1.50711 1.25244 0.95598 0.99650 0.97433 0.85894 0.79254 0.81017 0.78332 1.20480 1.20945 1.19475 1.19706 0.93318 0.82424 1.47470 0.88034 1.41912 1.09195 1.04635 1.63943 1.19814 0.88097 0.84810 0.83494 1.90408 1.14047 1.87122 1.56294 1.21190 0.97414 0.94958 0.98798 0.90374 1.21496 0.97341 1.01492 0.94174 1.21556 0.97690 0.99888 0.96842 1.21415 0.96829 0.97084 0.98264 1.21440 0.96026 1.00186 0.94145 0.87339 1.21824 0.94507 0.99043 0.90806 1.58727 1.24697 1.07535 1.46960 1.21183 0.96713 0.95898 0.98352 0.91927 0.77459 0.91694 0.92168 0.91300 0.92713 0.93435 0.91632 0.92053 0.96002 0.85629 0.84521 0.92847 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.27 5.18 -10.96 -0.06 -14.33 16 10 C 0.45 10.55 5.59 -10.99 -0.06 10.49 16 11 O -0.59 -15.49 13.23 5.54 0.07 -15.42 16 12 C -0.10 -1.85 3.01 -91.77 -0.28 -2.12 16 13 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 14 C -0.11 -1.75 5.36 -26.73 -0.14 -1.89 16 15 C -0.12 -2.06 5.70 -26.73 -0.15 -2.21 16 16 C -0.10 -1.54 5.09 -26.73 -0.14 -1.68 16 17 C -0.10 -1.65 2.04 -90.65 -0.18 -1.83 16 18 H 0.11 2.23 5.51 -51.93 -0.29 1.94 16 19 C 0.07 0.96 6.17 -3.82 -0.02 0.94 16 20 N -0.85 -10.88 9.08 -10.37 -0.09 -10.97 16 21 C -0.08 -1.36 4.37 -26.76 -0.12 -1.48 16 22 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 23 H 0.39 9.68 7.32 -40.82 -0.30 9.38 16 24 H 0.06 1.10 7.56 -51.93 -0.39 0.71 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.07 1.39 7.22 -51.93 -0.37 1.02 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.05 7.75 -51.93 -0.40 0.64 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.33 3.43 9.08 -39.29 -0.36 3.08 16 33 H 0.34 4.48 8.99 -39.29 -0.35 4.13 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 277.92 15.07 4.19 4.19 Total: -1.00 -29.51 277.92 -6.88 -36.39 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -5.36 Total: 15.76 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.34 Total: -7.79 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.57 Total: -49.29 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.07 Total: -15.42 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.51 -6.88 -36.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713856649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.009 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds