Wall clock time and date at job start Mon Mar 30 2020 02:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 119.99804 * 2 1 4 4 H 1.48502 * 109.47245 * 269.99987 * 3 2 1 5 5 H 1.48494 * 109.47271 * 30.00123 * 3 2 1 6 6 H 1.48510 * 109.46866 * 150.00202 * 3 2 1 7 7 C 1.38951 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99719 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.34770 * 119.99662 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00191 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00019 * 179.97438 * 10 9 7 13 13 H 1.09001 * 109.47122 * 60.00417 * 12 10 9 14 14 C 1.53006 * 109.47184 * 300.00531 * 12 10 9 15 15 C 1.52999 * 109.46626 * 299.99369 * 14 12 10 16 16 C 1.52997 * 109.47592 * 300.00035 * 15 14 12 17 17 C 1.52996 * 109.47165 * 60.00300 * 16 15 14 18 18 H 1.08996 * 109.47134 * 59.99508 * 17 16 15 19 19 C 1.52995 * 109.47577 * 180.02562 * 17 16 15 20 20 N 1.46909 * 109.46768 * 294.99868 * 19 17 16 21 21 C 1.52997 * 109.47342 * 180.02562 * 12 10 9 22 22 H 0.96998 * 120.00134 * 359.97438 * 1 2 3 23 23 H 0.96992 * 119.99820 * 359.97438 * 9 7 2 24 24 H 1.08993 * 109.46955 * 59.99842 * 14 12 10 25 25 H 1.09000 * 109.47050 * 179.97438 * 14 12 10 26 26 H 1.09000 * 109.47160 * 60.00369 * 15 14 12 27 27 H 1.09002 * 109.46719 * 180.02562 * 15 14 12 28 28 H 1.09000 * 109.47140 * 300.00346 * 16 15 14 29 29 H 1.09001 * 109.47375 * 180.02562 * 16 15 14 30 30 H 1.08998 * 109.47220 * 54.99171 * 19 17 16 31 31 H 1.08991 * 109.47712 * 174.99863 * 19 17 16 32 32 H 1.00899 * 110.99934 * 179.97438 * 20 19 17 33 33 H 1.00898 * 110.99719 * 303.95266 * 20 19 17 34 34 H 1.09000 * 109.47140 * 180.02562 * 21 12 10 35 35 H 1.09001 * 109.47230 * 299.99432 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 1 0.6169 -4.9209 -0.8887 14 6 0.3645 -4.9437 1.2507 15 6 1.2447 -4.8624 2.4996 16 6 2.2389 -6.0253 2.4995 17 6 3.1181 -5.9445 1.2500 18 1 3.6630 -5.0006 1.2496 19 6 4.1119 -7.1077 1.2496 20 7 5.0345 -6.9640 2.3838 21 6 2.2381 -6.0258 0.0016 22 1 -0.4850 0.8400 0.0004 23 1 0.3534 -2.3906 0.0005 24 1 -0.3437 -4.1153 1.2507 25 1 -0.1807 -5.8875 1.2509 26 1 1.7896 -3.9184 2.4992 27 1 0.6183 -4.9204 3.3898 28 1 1.6939 -6.9693 2.4999 29 1 2.8656 -5.9676 3.3895 30 1 3.5697 -8.0490 1.3394 31 1 4.6778 -7.1019 0.3181 32 1 5.7012 -7.7210 2.4058 33 1 5.5022 -6.0704 2.3584 34 1 1.6931 -6.9698 0.0016 35 1 2.8647 -5.9685 -0.8884 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713856649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:37 Heat of formation + Delta-G solvation = -88.774028 kcal Electronic energy + Delta-G solvation = -16414.553197 eV Core-core repulsion = 13831.020028 eV Total energy + Delta-G solvation = -2583.533170 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.13753 -38.39794 -35.91745 -35.43171 -33.24994 -31.72516 -31.11193 -27.10947 -25.49488 -23.90638 -22.53085 -21.34563 -20.27567 -19.51042 -17.43272 -16.97353 -16.52022 -15.99890 -15.69989 -15.56679 -15.44518 -15.11140 -14.52922 -14.26794 -13.58099 -13.16851 -13.04795 -12.88786 -12.84216 -12.67241 -12.57827 -12.38262 -12.12902 -11.78956 -11.62051 -11.22405 -10.92217 -10.88301 -10.04102 -9.89829 -9.52988 -8.45326 -5.93297 1.36536 1.39432 1.52141 2.11601 2.29717 3.21710 3.28068 3.68153 3.85298 3.97166 4.06586 4.25635 4.40434 4.45730 4.61793 4.67965 4.74885 4.77390 4.84158 4.94361 5.00209 5.11009 5.14929 5.35412 5.41290 5.42103 5.47773 5.60290 5.81587 6.04731 6.24709 6.62450 6.65199 7.15341 7.61533 8.17542 8.72362 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037437 B = 0.007355 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.744701 B = 3805.865624 C = 4098.801455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.990 3.010 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.450 3.550 11 O -0.624 6.624 12 C -0.098 4.098 13 H 0.097 0.903 14 C -0.102 4.102 15 C -0.122 4.122 16 C -0.090 4.090 17 C -0.099 4.099 18 H 0.061 0.939 19 C 0.075 3.925 20 N -0.853 5.853 21 C -0.081 4.081 22 H 0.277 0.723 23 H 0.394 0.606 24 H 0.054 0.946 25 H 0.101 0.899 26 H 0.021 0.979 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.017 0.983 32 H 0.348 0.652 33 H 0.338 0.662 34 H 0.093 0.907 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.836 -12.428 2.682 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.814 3.186 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.238 3.762 11 O -0.512 6.512 12 C -0.120 4.120 13 H 0.115 0.885 14 C -0.139 4.139 15 C -0.160 4.160 16 C -0.127 4.127 17 C -0.118 4.118 18 H 0.079 0.921 19 C -0.056 4.056 20 N -0.383 5.383 21 C -0.119 4.119 22 H 0.086 0.914 23 H 0.227 0.773 24 H 0.073 0.927 25 H 0.119 0.881 26 H 0.040 0.960 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.035 0.965 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.111 0.889 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.840 -12.336 3.135 12.756 hybrid contribution 0.722 1.385 -0.902 1.804 sum 1.562 -10.951 2.233 11.285 Atomic orbital electron populations 1.69675 1.06800 1.29136 1.50694 1.26003 0.96513 1.02313 0.96515 0.84975 0.77883 0.77145 0.78620 1.19638 1.19537 1.19906 1.19658 0.92589 0.84268 1.49651 0.90516 1.41975 1.09158 1.04771 1.65117 1.20882 0.88060 0.86135 0.81077 1.90401 1.15897 1.87935 1.56952 1.21268 0.97837 0.92122 1.00733 0.88523 1.21501 0.96714 1.03218 0.92512 1.21549 0.98021 0.98193 0.98215 1.21345 0.96381 0.97591 0.97379 1.21324 0.96535 0.99036 0.94912 0.92109 1.21736 0.94228 0.98610 0.90990 1.58716 1.25212 1.07960 1.46401 1.21222 0.96396 0.96703 0.97573 0.91405 0.77271 0.92729 0.88069 0.96017 0.90802 0.90588 0.92297 0.89901 0.96452 0.83886 0.85057 0.88851 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.80 13.05 21.66 0.28 -50.52 16 2 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 3 Si 0.99 43.84 29.55 68.60 2.03 45.87 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.33 -19.24 9.68 84.04 0.81 -18.42 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.57 -30.13 5.18 -306.99 -1.59 -31.72 16 10 C 0.45 21.59 5.59 87.66 0.49 22.08 16 11 O -0.62 -34.12 13.23 -3.07 -0.04 -34.16 16 12 C -0.10 -3.43 3.01 -11.54 -0.03 -3.47 16 13 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 14 C -0.10 -3.09 5.36 30.60 0.16 -2.93 16 15 C -0.12 -3.99 5.70 30.59 0.17 -3.82 16 16 C -0.09 -2.61 5.09 30.59 0.16 -2.46 16 17 C -0.10 -3.19 2.04 -10.81 -0.02 -3.21 16 18 H 0.06 2.58 5.51 -2.39 -0.01 2.57 16 19 C 0.08 1.95 6.17 86.30 0.53 2.48 16 20 N -0.85 -20.67 9.08 -186.72 -1.70 -22.37 16 21 C -0.08 -2.48 4.37 30.58 0.13 -2.35 16 22 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 23 H 0.39 19.94 7.32 -92.71 -0.68 19.27 16 24 H 0.05 1.78 7.56 -2.39 -0.02 1.76 16 25 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.02 0.89 7.22 -2.39 -0.02 0.87 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.79 7.75 -2.39 -0.02 1.78 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.35 6.53 9.08 -89.69 -0.81 5.72 16 33 H 0.34 8.84 8.99 -89.70 -0.81 8.03 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 Total: -1.00 -65.66 277.92 0.67 -64.99 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: -1.19 Total: 40.30 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 2.87 Total: -12.39 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -3.00 Total: -104.62 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.04 Total: -34.16 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -65.66 0.67 -64.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713856649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.786 kcal (2) G-P(sol) polarization free energy of solvation -65.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds