Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00208 * 2 1 4 4 H 1.48504 * 109.47184 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46905 * 299.99788 * 3 2 1 6 6 H 1.48495 * 109.47340 * 59.99841 * 3 2 1 7 7 C 1.37881 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00416 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99743 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46897 * 184.98287 * 9 7 2 11 11 C 1.47016 * 111.00084 * 58.73344 * 10 9 7 12 12 C 1.53094 * 109.36247 * 177.22496 * 11 10 9 13 13 O 1.43114 * 109.21445 * 57.29711 * 12 11 10 14 14 C 1.42426 * 113.80500 * 302.31193 * 13 12 11 15 15 C 1.54607 * 109.99778 * 178.78603 * 14 13 12 16 16 C 1.55034 * 102.61950 * 97.40841 * 15 14 13 17 17 N 1.48576 * 103.43254 * 37.03058 * 16 15 14 18 18 C 1.48015 * 105.83972 * 320.96806 * 17 16 15 19 19 C 1.47110 * 111.00062 * 295.18760 * 10 9 7 20 20 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46983 * 64.98147 * 9 7 2 22 22 H 1.09003 * 109.46902 * 304.98522 * 9 7 2 23 23 H 1.09004 * 109.48339 * 297.18628 * 11 10 9 24 24 H 1.08998 * 109.49247 * 57.25211 * 11 10 9 25 25 H 1.08999 * 109.50856 * 177.22325 * 12 11 10 26 26 H 1.09000 * 109.51319 * 297.32033 * 12 11 10 27 27 H 1.08996 * 110.92445 * 339.10253 * 15 14 13 28 28 H 1.09003 * 110.75396 * 215.63116 * 15 14 13 29 29 H 1.09004 * 110.65550 * 278.50329 * 16 15 14 30 30 H 1.08997 * 110.65709 * 155.56457 * 16 15 14 31 31 H 1.00909 * 110.99763 * 200.44711 * 17 16 15 32 32 H 1.09000 * 109.97796 * 144.60984 * 18 17 16 33 33 H 1.08994 * 109.97888 * 265.85744 * 18 17 16 34 34 H 1.08996 * 109.49810 * 61.49083 * 19 10 9 35 35 H 1.08998 * 109.52371 * 301.40856 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2010 -3.6131 0.1214 11 6 2.9937 -3.4980 1.3542 12 6 3.9200 -4.7107 1.4771 13 8 4.7512 -4.7882 0.3146 14 6 4.0242 -4.8757 -0.9071 15 6 5.0033 -4.9241 -2.1026 16 6 5.0999 -6.4425 -2.4001 17 7 3.7188 -6.9312 -2.1531 18 6 3.2350 -6.1920 -0.9655 19 6 3.0795 -3.6869 -1.0562 20 1 -0.4850 0.8401 -0.0004 21 1 0.6933 -2.5967 -0.9309 22 1 0.5587 -2.5190 0.8423 23 1 3.5906 -2.5866 1.3189 24 1 2.3253 -3.4623 2.2145 25 1 4.5440 -4.6038 2.3644 26 1 3.3224 -5.6185 1.5595 27 1 5.9776 -4.5224 -1.8244 28 1 4.5939 -4.3883 -2.9590 29 1 5.8049 -6.9232 -1.7217 30 1 5.3887 -6.6136 -3.4371 31 1 3.7116 -7.9265 -1.9871 32 1 2.1698 -5.9834 -1.0651 33 1 3.4171 -6.7763 -0.0635 34 1 3.6605 -2.7681 -1.1348 35 1 2.4750 -3.8131 -1.9543 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717490605.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = -34.497505 kcal Electronic energy + Delta-G solvation = -16655.185459 eV Core-core repulsion = 14074.005896 eV Total energy + Delta-G solvation = -2581.179563 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.95874 -36.68938 -35.12361 -32.40343 -30.95940 -28.96103 -28.35433 -25.92974 -24.25945 -22.85302 -21.63329 -20.41301 -18.68243 -16.91188 -16.49735 -15.97668 -14.92168 -14.62396 -14.49526 -14.28783 -13.87411 -13.51522 -12.88212 -12.82287 -12.07055 -11.85333 -11.68746 -11.50450 -11.23448 -11.14227 -10.90966 -10.87631 -10.67142 -10.29113 -10.16784 -9.77213 -9.65305 -9.01435 -8.46884 -8.43867 -7.26197 -6.06412 -4.15521 3.24376 3.32690 3.36581 4.01555 4.38063 4.45248 4.73969 4.90822 5.10591 5.21040 5.27035 5.40668 5.60059 5.60820 5.74506 5.80230 5.90492 5.97356 6.07811 6.12021 6.22392 6.38635 6.53636 6.63894 6.74754 6.83614 7.18890 7.35621 7.48209 7.63820 7.85282 7.95626 8.17670 8.24186 8.94381 9.51549 10.98920 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.039146 B = 0.007479 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.094750 B = 3743.143268 C = 3815.018638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.186 3.814 10 N -0.538 5.538 11 C 0.026 3.974 12 C 0.061 3.939 13 O -0.380 6.380 14 C 0.110 3.890 15 C -0.111 4.111 16 C 0.039 3.961 17 N -0.671 5.671 18 C 0.028 3.972 19 C 0.046 3.954 20 H 0.262 0.738 21 H 0.029 0.971 22 H 0.036 0.964 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.333 0.667 32 H 0.096 0.904 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.318 -11.049 -1.126 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.589 4.589 8 H 0.076 0.924 9 C 0.061 3.939 10 N -0.262 5.262 11 C -0.103 4.103 12 C -0.016 4.016 13 O -0.299 6.299 14 C 0.070 3.930 15 C -0.149 4.149 16 C -0.091 4.091 17 N -0.300 5.300 18 C -0.101 4.101 19 C -0.083 4.083 20 H 0.072 0.928 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.148 0.852 32 H 0.114 0.886 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.726 -10.962 -1.595 13.506 hybrid contribution 1.045 1.426 0.822 1.950 sum 8.771 -9.536 -0.773 12.979 Atomic orbital electron populations 1.69955 1.06014 1.26783 1.50116 1.24962 0.94769 0.99183 0.94839 0.86587 0.80149 0.83886 0.77711 1.19839 1.20876 1.20897 1.21771 0.93362 0.92075 1.51736 0.92429 1.19774 0.90779 0.85412 0.97949 1.62812 1.16496 1.46485 1.00428 1.22527 0.96204 0.96798 0.94771 1.22744 0.93262 0.98054 0.87532 1.87851 1.33579 1.94443 1.14074 1.22124 0.91465 0.94623 0.84832 1.22543 0.99669 0.96043 0.96658 1.23036 0.90089 0.95208 1.00735 1.63167 1.20172 1.08830 1.37831 1.23192 1.01579 0.94134 0.91245 1.22429 0.94730 0.95844 0.95316 0.92813 0.95256 0.94581 0.93171 0.90706 0.89441 0.93139 0.90124 0.89404 0.94162 0.90250 0.85230 0.88590 0.93882 0.93398 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.55 -15.14 7.63 -34.44 -0.26 -15.41 16 8 H 0.06 1.60 5.81 -52.49 -0.30 1.29 16 9 C 0.19 4.79 5.15 -4.97 -0.03 4.77 16 10 N -0.54 -11.55 4.63 -236.00 -1.09 -12.64 16 11 C 0.03 0.51 5.26 -3.71 -0.02 0.49 16 12 C 0.06 0.99 6.70 37.21 0.25 1.24 16 13 O -0.38 -6.70 10.21 -35.23 -0.36 -7.06 16 14 C 0.11 1.85 0.97 -89.69 -0.09 1.76 16 15 C -0.11 -1.59 6.36 -24.81 -0.16 -1.75 16 16 C 0.04 0.48 7.54 -1.82 -0.01 0.46 16 17 N -0.67 -8.97 7.52 -110.14 -0.83 -9.79 16 18 C 0.03 0.43 6.24 -2.90 -0.02 0.41 16 19 C 0.05 0.92 3.71 -3.93 -0.01 0.90 16 20 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 21 H 0.03 0.80 8.13 -51.93 -0.42 0.38 16 22 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.05 1.10 6.59 -51.93 -0.34 0.76 16 24 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 25 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.05 0.78 6.78 -51.93 -0.35 0.43 16 27 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 28 H 0.09 1.24 7.85 -51.93 -0.41 0.84 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.33 3.70 8.92 -39.29 -0.35 3.35 16 32 H 0.10 1.63 7.56 -51.93 -0.39 1.24 16 33 H 0.04 0.64 6.81 -51.93 -0.35 0.29 16 34 H 0.05 1.06 6.73 -51.93 -0.35 0.71 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 271.94 15.07 4.10 4.10 Total: -1.00 -29.43 271.94 -8.28 -37.71 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.36 Total: 2.02 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -0.45 Total: -5.39 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -1.19 Total: -47.85 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.36 Total: -7.06 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.43 -8.28 -37.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717490605.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.215 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds