Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00208 * 2 1 4 4 H 1.48504 * 109.47184 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46905 * 299.99788 * 3 2 1 6 6 H 1.48495 * 109.47340 * 59.99841 * 3 2 1 7 7 C 1.37881 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00416 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99743 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46897 * 184.98287 * 9 7 2 11 11 C 1.47016 * 111.00084 * 58.73344 * 10 9 7 12 12 C 1.53094 * 109.36247 * 177.22496 * 11 10 9 13 13 O 1.43114 * 109.21445 * 57.29711 * 12 11 10 14 14 C 1.42426 * 113.80500 * 302.31193 * 13 12 11 15 15 C 1.54607 * 109.99778 * 178.78603 * 14 13 12 16 16 C 1.55034 * 102.61950 * 97.40841 * 15 14 13 17 17 N 1.48576 * 103.43254 * 37.03058 * 16 15 14 18 18 C 1.48015 * 105.83972 * 320.96806 * 17 16 15 19 19 C 1.47110 * 111.00062 * 295.18760 * 10 9 7 20 20 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46983 * 64.98147 * 9 7 2 22 22 H 1.09003 * 109.46902 * 304.98522 * 9 7 2 23 23 H 1.09004 * 109.48339 * 297.18628 * 11 10 9 24 24 H 1.08998 * 109.49247 * 57.25211 * 11 10 9 25 25 H 1.08999 * 109.50856 * 177.22325 * 12 11 10 26 26 H 1.09000 * 109.51319 * 297.32033 * 12 11 10 27 27 H 1.08996 * 110.92445 * 339.10253 * 15 14 13 28 28 H 1.09003 * 110.75396 * 215.63116 * 15 14 13 29 29 H 1.09004 * 110.65550 * 278.50329 * 16 15 14 30 30 H 1.08997 * 110.65709 * 155.56457 * 16 15 14 31 31 H 1.00909 * 110.99763 * 200.44711 * 17 16 15 32 32 H 1.09000 * 109.97796 * 144.60984 * 18 17 16 33 33 H 1.08994 * 109.97888 * 265.85744 * 18 17 16 34 34 H 1.08996 * 109.49810 * 61.49083 * 19 10 9 35 35 H 1.08998 * 109.52371 * 301.40856 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2010 -3.6131 0.1214 11 6 2.9937 -3.4980 1.3542 12 6 3.9200 -4.7107 1.4771 13 8 4.7512 -4.7882 0.3146 14 6 4.0242 -4.8757 -0.9071 15 6 5.0033 -4.9241 -2.1026 16 6 5.0999 -6.4425 -2.4001 17 7 3.7188 -6.9312 -2.1531 18 6 3.2350 -6.1920 -0.9655 19 6 3.0795 -3.6869 -1.0562 20 1 -0.4850 0.8401 -0.0004 21 1 0.6933 -2.5967 -0.9309 22 1 0.5587 -2.5190 0.8423 23 1 3.5906 -2.5866 1.3189 24 1 2.3253 -3.4623 2.2145 25 1 4.5440 -4.6038 2.3644 26 1 3.3224 -5.6185 1.5595 27 1 5.9776 -4.5224 -1.8244 28 1 4.5939 -4.3883 -2.9590 29 1 5.8049 -6.9232 -1.7217 30 1 5.3887 -6.6136 -3.4371 31 1 3.7116 -7.9265 -1.9871 32 1 2.1698 -5.9834 -1.0651 33 1 3.4171 -6.7763 -0.0635 34 1 3.6605 -2.7681 -1.1348 35 1 2.4750 -3.8131 -1.9543 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717490605.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = -57.881739 kcal Electronic energy + Delta-G solvation = -16656.199475 eV Core-core repulsion = 14074.005896 eV Total energy + Delta-G solvation = -2582.193580 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.35332 -38.07578 -36.72364 -34.50299 -32.29309 -30.13680 -30.13266 -27.67181 -25.93931 -24.49041 -22.99719 -21.86771 -20.18988 -18.61544 -18.06258 -17.44581 -16.67063 -16.25400 -15.90247 -15.69542 -15.35751 -15.04781 -14.66266 -14.15426 -13.69796 -13.44753 -13.19195 -12.97849 -12.85058 -12.70849 -12.52087 -12.39286 -12.18537 -12.06928 -11.87095 -11.82908 -11.19190 -10.66001 -10.50925 -9.48231 -9.13802 -8.21241 -6.40680 1.32650 1.34096 1.45871 2.33315 2.70850 3.03822 3.18807 3.37548 3.69838 3.81960 3.87908 4.15979 4.27628 4.35182 4.39177 4.52398 4.61510 4.65111 4.81484 4.86866 4.97013 5.02253 5.05212 5.11120 5.17094 5.19364 5.27102 5.67973 5.72360 5.94882 6.14417 6.25379 6.36318 6.46092 6.78472 7.30816 8.82122 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.039146 B = 0.007479 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.094750 B = 3743.143268 C = 3815.018638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.559 4.559 8 H 0.052 0.948 9 C 0.200 3.800 10 N -0.534 5.534 11 C 0.025 3.975 12 C 0.068 3.932 13 O -0.386 6.386 14 C 0.109 3.891 15 C -0.113 4.113 16 C 0.046 3.954 17 N -0.676 5.676 18 C 0.037 3.963 19 C 0.051 3.949 20 H 0.266 0.734 21 H 0.004 0.996 22 H 0.012 0.988 23 H 0.024 0.976 24 H 0.075 0.925 25 H 0.118 0.882 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.349 0.651 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.021 0.979 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.097 -11.943 -1.120 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.598 4.598 8 H 0.070 0.930 9 C 0.073 3.927 10 N -0.258 5.258 11 C -0.104 4.104 12 C -0.008 4.008 13 O -0.305 6.305 14 C 0.069 3.931 15 C -0.151 4.151 16 C -0.083 4.083 17 N -0.307 5.307 18 C -0.093 4.093 19 C -0.078 4.078 20 H 0.076 0.924 21 H 0.022 0.978 22 H 0.030 0.970 23 H 0.042 0.958 24 H 0.094 0.906 25 H 0.136 0.864 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.166 0.834 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.519 -11.883 -1.589 15.308 hybrid contribution 0.464 1.678 0.815 1.922 sum 9.983 -10.206 -0.774 14.297 Atomic orbital electron populations 1.70064 1.07510 1.27951 1.50848 1.25808 0.95636 1.02840 0.94362 0.85509 0.78763 0.79369 0.78065 1.19475 1.20151 1.20025 1.21949 0.93163 0.93047 1.51591 0.92958 1.19431 0.91165 0.86617 0.95492 1.62734 1.16941 1.44141 1.01978 1.22608 0.96265 0.97735 0.93754 1.22812 0.93156 0.96587 0.88295 1.87855 1.33905 1.94315 1.14401 1.22165 0.91587 0.93655 0.85718 1.22601 0.99140 0.98026 0.95343 1.23059 0.89599 0.93240 1.02355 1.63114 1.21039 1.09861 1.36660 1.22962 1.00108 0.93642 0.92595 1.22417 0.94539 0.96531 0.94299 0.92450 0.97788 0.96996 0.95760 0.90636 0.86404 0.91619 0.89546 0.89683 0.92969 0.88091 0.83445 0.90720 0.92899 0.96099 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.34 13.29 21.45 0.28 -55.05 16 2 C 0.01 0.75 5.46 84.66 0.46 1.22 16 3 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.56 -31.58 7.63 25.60 0.20 -31.38 16 8 H 0.05 2.97 5.81 -2.91 -0.02 2.95 16 9 C 0.20 10.71 5.15 85.56 0.44 11.15 16 10 N -0.53 -23.51 4.63 -900.58 -4.17 -27.68 16 11 C 0.03 0.99 5.26 86.31 0.45 1.45 16 12 C 0.07 2.08 6.70 72.01 0.48 2.57 16 13 O -0.39 -12.81 10.21 -148.98 -1.52 -14.33 16 14 C 0.11 3.55 0.97 -10.19 -0.01 3.54 16 15 C -0.11 -3.04 6.36 31.84 0.20 -2.84 16 16 C 0.05 0.99 7.54 86.67 0.65 1.65 16 17 N -0.68 -16.32 7.52 -502.38 -3.78 -20.10 16 18 C 0.04 1.06 6.24 86.29 0.54 1.60 16 19 C 0.05 2.09 3.71 86.12 0.32 2.40 16 20 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 21 H 0.00 0.23 8.13 -2.39 -0.02 0.21 16 22 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.02 1.08 6.59 -2.38 -0.02 1.06 16 24 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 25 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 26 H 0.07 1.85 6.78 -2.39 -0.02 1.84 16 27 H 0.09 2.22 8.07 -2.39 -0.02 2.21 16 28 H 0.08 2.32 7.85 -2.39 -0.02 2.30 16 29 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.35 6.67 8.92 -89.69 -0.80 5.87 16 32 H 0.07 2.50 7.56 -2.39 -0.02 2.48 16 33 H 0.05 1.43 6.81 -2.39 -0.02 1.42 16 34 H 0.02 0.95 6.73 -2.39 -0.02 0.94 16 35 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -63.63 271.94 -3.14 -66.77 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.28 Total: 12.59 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 3.74 Total: -8.65 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -7.66 Total: -102.84 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -1.52 Total: -14.33 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -63.63 -3.14 -66.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717490605.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.891 kcal (2) G-P(sol) polarization free energy of solvation -63.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds