Wall clock time and date at job start Mon Mar 30 2020 02:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48503 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47461 * 299.99666 * 3 2 1 6 6 H 1.48507 * 109.47042 * 59.99959 * 3 2 1 7 7 C 1.37873 * 119.99552 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99593 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00427 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.47078 * 111.03315 * 293.54815 * 10 9 7 12 12 C 1.53101 * 109.31481 * 177.15580 * 11 10 9 13 13 O 1.43102 * 109.21335 * 57.36767 * 12 11 10 14 14 C 1.42419 * 113.87601 * 302.33687 * 13 12 11 15 15 C 1.53817 * 110.25681 * 294.85938 * 14 13 12 16 16 C 1.54485 * 104.91499 * 241.00188 * 15 14 13 17 17 N 1.48597 * 104.60457 * 23.78568 * 16 15 14 18 18 C 1.48655 * 104.28851 * 320.78175 * 17 16 15 19 19 C 1.47100 * 111.00040 * 169.99858 * 10 9 7 20 20 H 0.97004 * 119.99883 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47055 * 60.00039 * 9 7 2 22 22 H 1.08994 * 109.46723 * 299.99734 * 9 7 2 23 23 H 1.08993 * 109.48945 * 57.20318 * 11 10 9 24 24 H 1.09002 * 109.51585 * 297.11846 * 11 10 9 25 25 H 1.09004 * 109.51195 * 297.44971 * 12 11 10 26 26 H 1.09001 * 109.51487 * 177.29330 * 12 11 10 27 27 H 1.09007 * 110.35171 * 359.86374 * 15 14 13 28 28 H 1.08999 * 110.35137 * 122.13960 * 15 14 13 29 29 H 1.09000 * 110.41036 * 265.00496 * 16 15 14 30 30 H 1.09000 * 110.41318 * 142.56941 * 16 15 14 31 31 H 1.00904 * 111.00472 * 201.18357 * 17 16 15 32 32 H 1.08998 * 110.42571 * 280.34341 * 18 17 16 33 33 H 1.08994 * 110.43555 * 157.84781 * 18 17 16 34 34 H 1.09002 * 109.48918 * 61.45088 * 19 10 9 35 35 H 1.09002 * 109.48893 * 301.40899 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 2.9654 -3.6605 -1.2579 12 6 3.9950 -4.7915 -1.1878 13 8 3.3206 -6.0269 -0.9293 14 6 2.5478 -6.0225 0.2670 15 6 3.4649 -5.8738 1.4928 16 6 3.2338 -7.1577 2.3204 17 7 2.7420 -8.1552 1.3349 18 6 1.8397 -7.3780 0.4452 19 6 1.5201 -4.8953 0.2390 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 3.4782 -2.7104 -1.4071 24 1 2.2834 -3.8405 -2.0889 25 1 4.7042 -4.5890 -0.3851 26 1 4.5272 -4.8587 -2.1366 27 1 4.5071 -5.8065 1.1806 28 1 3.1842 -4.9940 2.0717 29 1 2.4832 -6.9831 3.0913 30 1 4.1686 -7.4948 2.7683 31 1 2.2419 -8.9015 1.7945 32 1 0.8669 -7.2397 0.9171 33 1 1.7293 -7.8790 -0.5164 34 1 0.8019 -5.0776 -0.5603 35 1 0.9979 -4.8554 1.1950 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717490608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:29 Heat of formation + Delta-G solvation = -33.153561 kcal Electronic energy + Delta-G solvation = -16488.328445 eV Core-core repulsion = 13907.207159 eV Total energy + Delta-G solvation = -2581.121285 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.97845 -36.75631 -35.06667 -32.50450 -30.83580 -29.34249 -28.25775 -26.30879 -24.04920 -22.71356 -21.71399 -20.58130 -18.64529 -16.66852 -16.60078 -15.96382 -15.33320 -14.69244 -14.44048 -14.28569 -13.73010 -13.55764 -13.18742 -12.86239 -12.17739 -12.04530 -11.89504 -11.37471 -11.24418 -11.07988 -10.93670 -10.78831 -10.65783 -10.58216 -10.15670 -9.79986 -9.37265 -8.95120 -8.57484 -8.48639 -7.34955 -6.07819 -4.09636 3.27744 3.35284 3.39802 4.02997 4.29113 4.37669 4.64955 4.92409 5.05795 5.23378 5.28498 5.30287 5.54435 5.58937 5.71758 5.78311 5.79996 5.88674 5.98356 6.02609 6.13935 6.17213 6.45620 6.50616 6.57687 6.73525 7.17464 7.26187 7.28398 7.64094 7.72747 7.98826 8.09864 8.45688 8.97891 9.54978 11.03174 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.045923 B = 0.006699 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.564524 B = 4178.424430 C = 4298.163450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.530 5.530 11 C 0.028 3.972 12 C 0.061 3.939 13 O -0.373 6.373 14 C 0.122 3.878 15 C -0.138 4.138 16 C 0.035 3.965 17 N -0.663 5.663 18 C 0.048 3.952 19 C 0.033 3.967 20 H 0.261 0.739 21 H -0.008 1.008 22 H 0.030 0.970 23 H 0.092 0.908 24 H 0.029 0.971 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.333 0.667 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.031 0.969 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.608 -12.209 1.789 13.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.256 5.256 11 C -0.101 4.101 12 C -0.016 4.016 13 O -0.292 6.292 14 C 0.081 3.919 15 C -0.176 4.176 16 C -0.094 4.094 17 N -0.292 5.292 18 C -0.082 4.082 19 C -0.096 4.096 20 H 0.071 0.929 21 H 0.010 0.990 22 H 0.049 0.951 23 H 0.111 0.889 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.148 0.852 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.402 -12.188 1.612 13.428 hybrid contribution -1.126 1.307 0.076 1.727 sum 4.275 -10.880 1.688 11.812 Atomic orbital electron populations 1.69972 1.06099 1.26748 1.50970 1.25000 0.94877 0.99389 0.95371 0.86430 0.80054 0.83328 0.77546 1.19631 1.21069 1.20981 1.21168 0.93513 0.89824 1.50125 0.91783 1.19749 0.90037 0.87274 0.96176 1.62406 1.28126 1.02282 1.32752 1.22630 0.96589 0.99442 0.91440 1.22750 0.94454 0.83670 1.00687 1.87863 1.64806 1.34895 1.41607 1.21766 0.90949 0.93676 0.85467 1.22802 1.00834 0.97454 0.96536 1.22961 1.00015 0.92487 0.93987 1.63721 1.36474 1.10149 1.18817 1.22815 0.93762 0.92993 0.98601 1.22607 0.95027 0.90906 1.01070 0.92924 0.99034 0.95145 0.88939 0.95283 0.92596 0.89261 0.90573 0.89422 0.94166 0.90350 0.85208 0.92790 0.89219 0.95104 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -14.11 8.48 -34.44 -0.29 -14.40 16 8 H 0.06 1.76 7.15 -52.48 -0.38 1.38 16 9 C 0.19 5.00 4.72 -4.98 -0.02 4.98 16 10 N -0.53 -11.44 4.45 -235.96 -1.05 -12.49 16 11 C 0.03 0.55 5.45 -3.67 -0.02 0.53 16 12 C 0.06 1.02 6.70 37.21 0.25 1.27 16 13 O -0.37 -6.56 10.21 -35.23 -0.36 -6.92 16 14 C 0.12 1.98 1.03 -89.91 -0.09 1.89 16 15 C -0.14 -2.09 5.69 -25.53 -0.15 -2.23 16 16 C 0.03 0.43 7.48 -2.10 -0.02 0.42 16 17 N -0.66 -8.34 7.63 -109.74 -0.84 -9.18 16 18 C 0.05 0.66 6.75 -2.35 -0.02 0.64 16 19 C 0.03 0.62 3.95 -3.94 -0.02 0.60 16 20 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 21 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 22 H 0.03 0.84 8.05 -51.93 -0.42 0.42 16 23 H 0.09 1.91 6.82 -51.93 -0.35 1.55 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.92 6.77 -51.93 -0.35 0.56 16 26 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.08 1.18 6.81 -51.93 -0.35 0.82 16 28 H 0.09 1.43 7.62 -51.93 -0.40 1.03 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.33 3.31 8.92 -39.29 -0.35 2.96 16 32 H 0.05 0.67 7.84 -51.93 -0.41 0.26 16 33 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 LS Contribution 275.44 15.07 4.15 4.15 Total: -1.00 -30.20 275.44 -8.36 -38.56 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.52 Total: 0.15 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.47 Total: -4.86 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -1.15 Total: -47.50 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.36 Total: -6.92 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.20 -8.36 -38.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717490608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.408 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds