Wall clock time and date at job start Mon Mar 30 2020 02:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48503 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47461 * 299.99666 * 3 2 1 6 6 H 1.48507 * 109.47042 * 59.99959 * 3 2 1 7 7 C 1.37873 * 119.99552 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99593 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00427 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.47078 * 111.03315 * 293.54815 * 10 9 7 12 12 C 1.53101 * 109.31481 * 177.15580 * 11 10 9 13 13 O 1.43102 * 109.21335 * 57.36767 * 12 11 10 14 14 C 1.42419 * 113.87601 * 302.33687 * 13 12 11 15 15 C 1.53817 * 110.25681 * 294.85938 * 14 13 12 16 16 C 1.54485 * 104.91499 * 241.00188 * 15 14 13 17 17 N 1.48597 * 104.60457 * 23.78568 * 16 15 14 18 18 C 1.48655 * 104.28851 * 320.78175 * 17 16 15 19 19 C 1.47100 * 111.00040 * 169.99858 * 10 9 7 20 20 H 0.97004 * 119.99883 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47055 * 60.00039 * 9 7 2 22 22 H 1.08994 * 109.46723 * 299.99734 * 9 7 2 23 23 H 1.08993 * 109.48945 * 57.20318 * 11 10 9 24 24 H 1.09002 * 109.51585 * 297.11846 * 11 10 9 25 25 H 1.09004 * 109.51195 * 297.44971 * 12 11 10 26 26 H 1.09001 * 109.51487 * 177.29330 * 12 11 10 27 27 H 1.09007 * 110.35171 * 359.86374 * 15 14 13 28 28 H 1.08999 * 110.35137 * 122.13960 * 15 14 13 29 29 H 1.09000 * 110.41036 * 265.00496 * 16 15 14 30 30 H 1.09000 * 110.41318 * 142.56941 * 16 15 14 31 31 H 1.00904 * 111.00472 * 201.18357 * 17 16 15 32 32 H 1.08998 * 110.42571 * 280.34341 * 18 17 16 33 33 H 1.08994 * 110.43555 * 157.84781 * 18 17 16 34 34 H 1.09002 * 109.48918 * 61.45088 * 19 10 9 35 35 H 1.09002 * 109.48893 * 301.40899 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 2.9654 -3.6605 -1.2579 12 6 3.9950 -4.7915 -1.1878 13 8 3.3206 -6.0269 -0.9293 14 6 2.5478 -6.0225 0.2670 15 6 3.4649 -5.8738 1.4928 16 6 3.2338 -7.1577 2.3204 17 7 2.7420 -8.1552 1.3349 18 6 1.8397 -7.3780 0.4452 19 6 1.5201 -4.8953 0.2390 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 3.4782 -2.7104 -1.4071 24 1 2.2834 -3.8405 -2.0889 25 1 4.7042 -4.5890 -0.3851 26 1 4.5272 -4.8587 -2.1366 27 1 4.5071 -5.8065 1.1806 28 1 3.1842 -4.9940 2.0717 29 1 2.4832 -6.9831 3.0913 30 1 4.1686 -7.4948 2.7683 31 1 2.2419 -8.9015 1.7945 32 1 0.8669 -7.2397 0.9171 33 1 1.7293 -7.8790 -0.5164 34 1 0.8019 -5.0776 -0.5603 35 1 0.9979 -4.8554 1.1950 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717490608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:28 Heat of formation + Delta-G solvation = -56.974092 kcal Electronic energy + Delta-G solvation = -16489.361380 eV Core-core repulsion = 13907.207159 eV Total energy + Delta-G solvation = -2582.154221 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.33469 -38.08013 -36.67625 -34.59059 -32.17652 -30.57389 -29.97313 -27.94261 -25.66857 -24.43002 -22.88117 -22.17056 -20.02817 -18.63405 -17.80390 -17.48626 -16.85332 -16.38786 -16.15045 -15.56285 -15.19947 -15.03013 -14.56571 -14.32741 -14.08633 -13.47602 -13.13862 -13.05943 -12.72564 -12.70926 -12.61211 -12.31203 -12.22763 -12.06341 -11.93056 -11.41647 -11.23063 -10.66717 -10.46136 -9.55178 -9.15930 -8.24529 -6.35182 1.40110 1.40619 1.54324 2.37517 2.73625 3.04930 3.10701 3.28808 3.74708 3.76289 3.94726 4.11956 4.19249 4.27315 4.36710 4.52817 4.54582 4.59171 4.64567 4.77266 4.90586 4.94212 4.99543 5.03906 5.11680 5.17584 5.24524 5.59433 5.66729 5.96668 6.17841 6.28794 6.43672 6.49278 6.80127 7.34948 8.87196 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.045923 B = 0.006699 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.564524 B = 4178.424430 C = 4298.163450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.065 0.935 9 C 0.208 3.792 10 N -0.533 5.533 11 C 0.028 3.972 12 C 0.070 3.930 13 O -0.381 6.381 14 C 0.119 3.881 15 C -0.137 4.137 16 C 0.041 3.959 17 N -0.666 5.666 18 C 0.052 3.948 19 C 0.034 3.966 20 H 0.265 0.735 21 H -0.041 1.041 22 H 0.006 0.994 23 H 0.081 0.919 24 H 0.017 0.983 25 H 0.062 0.938 26 H 0.119 0.881 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.351 0.649 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.021 0.979 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 -12.920 2.222 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.561 4.561 8 H 0.084 0.916 9 C 0.082 3.918 10 N -0.258 5.258 11 C -0.101 4.101 12 C -0.007 4.007 13 O -0.300 6.300 14 C 0.079 3.921 15 C -0.175 4.175 16 C -0.088 4.088 17 N -0.297 5.297 18 C -0.077 4.077 19 C -0.095 4.095 20 H 0.074 0.926 21 H -0.023 1.023 22 H 0.024 0.976 23 H 0.099 0.901 24 H 0.035 0.965 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.168 0.832 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.039 0.961 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.837 -12.934 2.051 14.773 hybrid contribution -1.606 1.490 -0.062 2.192 sum 5.230 -11.444 1.989 12.739 Atomic orbital electron populations 1.70099 1.07834 1.27960 1.51704 1.25946 0.95751 1.03335 0.94664 0.85289 0.79001 0.78329 0.77730 1.18531 1.20430 1.20366 1.21453 0.93686 0.90795 1.50177 0.91637 1.19401 0.90063 0.88951 0.93417 1.62325 1.27184 1.02470 1.33820 1.22675 0.96830 1.00485 0.90093 1.22769 0.93294 0.82088 1.02509 1.87866 1.64876 1.34946 1.42276 1.21887 0.90591 0.93988 0.85679 1.22743 1.00172 0.98452 0.96176 1.22941 1.01230 0.90957 0.93682 1.63682 1.36543 1.10406 1.19035 1.22765 0.94255 0.91488 0.99220 1.22696 0.95725 0.90413 1.00684 0.92616 1.02286 0.97598 0.90100 0.96513 0.92019 0.86337 0.90874 0.91055 0.92908 0.88813 0.83204 0.91457 0.89224 0.96109 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.40 13.29 21.45 0.28 -56.11 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.52 -29.59 8.48 25.60 0.22 -29.37 16 8 H 0.07 3.61 7.15 -2.91 -0.02 3.59 16 9 C 0.21 11.24 4.72 85.56 0.40 11.64 16 10 N -0.53 -23.48 4.45 -900.46 -4.01 -27.49 16 11 C 0.03 1.10 5.45 86.30 0.47 1.57 16 12 C 0.07 2.23 6.70 72.02 0.48 2.71 16 13 O -0.38 -12.82 10.21 -148.98 -1.52 -14.34 16 14 C 0.12 3.73 1.03 -10.33 -0.01 3.72 16 15 C -0.14 -3.94 5.69 31.37 0.18 -3.76 16 16 C 0.04 0.91 7.48 86.48 0.65 1.55 16 17 N -0.67 -14.83 7.63 -501.10 -3.82 -18.65 16 18 C 0.05 1.33 6.75 86.29 0.58 1.91 16 19 C 0.03 1.27 3.95 86.12 0.34 1.61 16 20 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 21 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16 22 H 0.01 0.34 8.05 -2.39 -0.02 0.32 16 23 H 0.08 3.38 6.82 -2.39 -0.02 3.36 16 24 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 1.92 6.77 -2.38 -0.02 1.90 16 26 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.07 2.13 6.81 -2.38 -0.02 2.12 16 28 H 0.07 2.27 7.62 -2.39 -0.02 2.25 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.35 5.84 8.92 -89.69 -0.80 5.04 16 32 H 0.07 1.52 7.84 -2.39 -0.02 1.50 16 33 H 0.09 2.30 8.07 -2.39 -0.02 2.28 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 Total: -1.00 -64.88 275.44 -2.99 -67.88 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.27 Total: 10.59 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 3.77 Total: -7.89 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -7.54 Total: -102.25 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -1.52 Total: -14.34 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -64.88 -2.99 -67.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717490608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.902 kcal (2) G-P(sol) polarization free energy of solvation -64.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds