Wall clock time and date at job start Mon Mar 30 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99826 * 2 1 4 4 H 1.48494 * 109.47096 * 269.99571 * 3 2 1 5 5 H 1.48507 * 109.47119 * 149.99533 * 3 2 1 6 6 H 1.48498 * 109.47231 * 29.99702 * 3 2 1 7 7 C 1.37872 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00375 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99851 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46825 * 175.13470 * 9 7 2 11 11 C 1.48607 * 110.99574 * 175.72352 * 10 9 7 12 12 C 1.54488 * 104.60854 * 201.18753 * 11 10 9 13 13 C 1.53819 * 104.90466 * 23.77111 * 12 11 10 14 14 C 1.48655 * 111.00305 * 60.23292 * 10 9 7 15 15 C 1.52576 * 110.17522 * 118.65896 * 13 12 11 16 16 N 1.47109 * 109.29409 * 177.60139 * 15 13 12 17 17 C 1.47009 * 110.69509 * 302.29911 * 16 15 13 18 18 C 1.53102 * 109.37238 * 59.03203 * 17 16 15 19 19 O 1.42430 * 110.25332 * 241.01950 * 13 12 11 20 20 H 0.96999 * 119.99962 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47163 * 295.13534 * 9 7 2 22 22 H 1.09006 * 109.46840 * 55.13652 * 9 7 2 23 23 H 1.09001 * 110.41211 * 319.97274 * 11 10 9 24 24 H 1.09000 * 110.40622 * 82.29298 * 11 10 9 25 25 H 1.09000 * 110.35424 * 142.62638 * 12 11 10 26 26 H 1.08997 * 110.35814 * 264.91214 * 12 11 10 27 27 H 1.09005 * 110.43051 * 277.44729 * 14 10 9 28 28 H 1.09002 * 110.42959 * 39.93752 * 14 10 9 29 29 H 1.09002 * 109.49815 * 297.54641 * 15 13 12 30 30 H 1.08998 * 109.49901 * 57.65195 * 15 13 12 31 31 H 1.00900 * 111.00126 * 66.03074 * 16 15 13 32 32 H 1.09010 * 109.48658 * 299.06626 * 17 16 15 33 33 H 1.08997 * 109.49125 * 179.00678 * 17 16 15 34 34 H 1.08995 * 109.51541 * 182.79098 * 18 17 16 35 35 H 1.08995 * 109.51343 * 62.62078 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 3.5467 1.4403 0.7002 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2015 -3.6132 -0.1163 11 6 1.5034 -4.9213 -0.0167 12 6 2.6076 -5.9221 0.3906 13 6 3.6873 -5.0644 1.0720 14 6 3.1572 -3.6199 1.0223 15 6 3.8719 -5.5045 2.5212 16 7 4.9472 -4.7114 3.1368 17 6 6.2001 -4.8608 2.3824 18 6 5.9815 -4.4005 0.9386 19 8 4.9163 -5.1604 0.3585 20 1 -0.4850 -0.8400 0.0004 21 1 0.6910 -2.5954 0.9307 22 1 0.5610 -2.5202 -0.8430 23 1 0.7268 -4.8805 0.7471 24 1 1.0742 -5.1973 -0.9798 25 1 2.2121 -6.6593 1.0894 26 1 3.0161 -6.4156 -0.4913 27 1 3.9733 -2.9211 0.8382 28 1 2.6441 -3.3707 1.9512 29 1 2.9436 -5.3470 3.0704 30 1 4.1373 -6.5613 2.5495 31 1 4.6834 -3.7403 3.2109 32 1 6.5054 -5.9072 2.3881 33 1 6.9775 -4.2524 2.8443 34 1 6.8947 -4.5565 0.3645 35 1 5.7208 -3.3422 0.9295 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719986634.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:31 Heat of formation + Delta-G solvation = -37.404887 kcal Electronic energy + Delta-G solvation = -16642.824546 eV Core-core repulsion = 14061.518910 eV Total energy + Delta-G solvation = -2581.305637 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.29930 -36.99388 -34.40202 -33.44731 -31.51027 -29.26511 -27.31553 -25.90743 -24.52146 -23.15913 -21.72181 -20.46159 -19.35498 -16.93461 -16.47820 -16.20905 -15.63039 -14.92991 -14.69639 -13.95764 -13.74949 -13.61239 -13.23159 -12.70556 -12.46990 -12.14809 -11.68565 -11.42028 -11.36310 -11.10161 -11.05774 -10.95290 -10.83904 -10.67244 -10.34428 -10.12747 -9.64348 -8.67536 -8.43540 -8.17541 -7.54445 -6.42482 -4.11664 3.40702 3.43799 3.59501 3.86934 4.18125 4.47557 4.61968 4.90547 4.96132 5.00557 5.14337 5.27719 5.32847 5.35922 5.38912 5.56226 5.69577 5.81052 5.87321 5.95061 5.98576 6.15585 6.16181 6.33868 6.45981 6.81608 6.84799 6.98403 7.23926 7.40379 7.58075 7.87821 8.21699 8.49423 8.81034 9.59425 10.97240 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.030284 B = 0.008382 C = 0.007211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.365201 B = 3339.855804 C = 3882.054724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.075 2.925 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.591 4.591 8 H 0.054 0.946 9 C 0.171 3.829 10 N -0.495 5.495 11 C 0.027 3.973 12 C -0.105 4.105 13 C 0.072 3.928 14 C 0.031 3.969 15 C 0.039 3.961 16 N -0.684 5.684 17 C 0.021 3.979 18 C 0.017 3.983 19 O -0.361 6.361 20 H 0.267 0.733 21 H -0.020 1.020 22 H 0.025 0.975 23 H 0.036 0.964 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.345 0.655 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.962 -10.524 4.508 14.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.903 3.097 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.630 4.630 8 H 0.073 0.927 9 C 0.045 3.955 10 N -0.219 5.219 11 C -0.101 4.101 12 C -0.144 4.144 13 C 0.030 3.970 14 C -0.098 4.098 15 C -0.091 4.091 16 N -0.313 5.313 17 C -0.109 4.109 18 C -0.061 4.061 19 O -0.279 6.279 20 H 0.078 0.922 21 H -0.002 1.002 22 H 0.043 0.957 23 H 0.054 0.946 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.210 -9.390 4.312 13.841 hybrid contribution -0.506 -0.984 0.104 1.111 sum 8.703 -10.374 4.416 14.243 Atomic orbital electron populations 1.70767 1.06869 1.30462 1.46764 1.25863 0.96497 1.02738 0.93771 0.83459 0.74522 0.74865 0.76868 1.21327 1.21517 1.20972 1.21962 0.94604 0.91034 1.55361 0.92745 1.20023 0.91399 0.89454 0.94670 1.65439 1.15647 1.01372 1.39460 1.23143 0.95249 0.91354 1.00368 1.22220 0.94142 0.97184 1.00826 1.22674 0.85417 0.96418 0.92486 1.23381 0.97794 0.94602 0.94002 1.22602 0.95481 0.98680 0.92365 1.60946 1.03614 1.15543 1.51194 1.22648 0.92996 1.02731 0.92480 1.23300 0.91299 0.96227 0.95313 1.88013 1.18458 1.69859 1.51597 0.92245 1.00197 0.95659 0.94589 0.90615 0.90858 0.90042 0.90101 0.93839 0.89756 0.90229 0.83673 0.90280 0.89817 0.88656 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.95 13.65 55.43 0.76 -27.19 16 2 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.48 29.90 -169.99 -5.08 20.40 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.59 -16.97 8.70 -34.44 -0.30 -17.27 16 8 H 0.05 1.56 6.84 -52.48 -0.36 1.21 16 9 C 0.17 4.51 4.02 -4.97 -0.02 4.49 16 10 N -0.50 -11.19 5.44 -231.48 -1.26 -12.45 16 11 C 0.03 0.50 6.51 -2.10 -0.01 0.49 16 12 C -0.11 -1.62 6.45 -25.52 -0.16 -1.78 16 13 C 0.07 1.16 1.04 -89.92 -0.09 1.07 16 14 C 0.03 0.61 4.08 -2.36 -0.01 0.60 16 15 C 0.04 0.53 5.17 -3.93 -0.02 0.51 16 16 N -0.68 -9.00 6.90 -113.72 -0.79 -9.79 16 17 C 0.02 0.25 6.74 -3.71 -0.03 0.23 16 18 C 0.02 0.23 6.73 37.21 0.25 0.48 16 19 O -0.36 -6.07 10.22 -35.23 -0.36 -6.43 16 20 H 0.27 8.16 7.19 -40.82 -0.29 7.87 16 21 H -0.02 -0.53 7.97 -51.93 -0.41 -0.95 16 22 H 0.03 0.71 7.82 -51.93 -0.41 0.31 16 23 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 24 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.07 0.93 7.70 -51.93 -0.40 0.53 16 26 H 0.08 1.25 7.97 -51.93 -0.41 0.84 16 27 H 0.08 1.72 5.32 -51.93 -0.28 1.44 16 28 H 0.04 0.89 7.59 -51.93 -0.39 0.49 16 29 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.35 4.67 8.25 -39.29 -0.32 4.35 16 32 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.87 6.33 -51.93 -0.33 0.54 16 LS Contribution 271.95 15.07 4.10 4.10 Total: -1.00 -31.63 271.95 -8.47 -40.10 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.35 Total: 2.10 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -0.49 Total: -10.83 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -1.29 Total: -49.43 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.36 Total: -6.43 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.63 -8.47 -40.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719986634.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.693 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds