Wall clock time and date at job start Mon Mar 30 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99826 * 2 1 4 4 H 1.48494 * 109.47096 * 269.99571 * 3 2 1 5 5 H 1.48507 * 109.47119 * 149.99533 * 3 2 1 6 6 H 1.48498 * 109.47231 * 29.99702 * 3 2 1 7 7 C 1.37872 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00375 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99851 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46825 * 175.13470 * 9 7 2 11 11 C 1.48607 * 110.99574 * 175.72352 * 10 9 7 12 12 C 1.54488 * 104.60854 * 201.18753 * 11 10 9 13 13 C 1.53819 * 104.90466 * 23.77111 * 12 11 10 14 14 C 1.48655 * 111.00305 * 60.23292 * 10 9 7 15 15 C 1.52576 * 110.17522 * 118.65896 * 13 12 11 16 16 N 1.47109 * 109.29409 * 177.60139 * 15 13 12 17 17 C 1.47009 * 110.69509 * 302.29911 * 16 15 13 18 18 C 1.53102 * 109.37238 * 59.03203 * 17 16 15 19 19 O 1.42430 * 110.25332 * 241.01950 * 13 12 11 20 20 H 0.96999 * 119.99962 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47163 * 295.13534 * 9 7 2 22 22 H 1.09006 * 109.46840 * 55.13652 * 9 7 2 23 23 H 1.09001 * 110.41211 * 319.97274 * 11 10 9 24 24 H 1.09000 * 110.40622 * 82.29298 * 11 10 9 25 25 H 1.09000 * 110.35424 * 142.62638 * 12 11 10 26 26 H 1.08997 * 110.35814 * 264.91214 * 12 11 10 27 27 H 1.09005 * 110.43051 * 277.44729 * 14 10 9 28 28 H 1.09002 * 110.42959 * 39.93752 * 14 10 9 29 29 H 1.09002 * 109.49815 * 297.54641 * 15 13 12 30 30 H 1.08998 * 109.49901 * 57.65195 * 15 13 12 31 31 H 1.00900 * 111.00126 * 66.03074 * 16 15 13 32 32 H 1.09010 * 109.48658 * 299.06626 * 17 16 15 33 33 H 1.08997 * 109.49125 * 179.00678 * 17 16 15 34 34 H 1.08995 * 109.51541 * 182.79098 * 18 17 16 35 35 H 1.08995 * 109.51343 * 62.62078 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 3.5467 1.4403 0.7002 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2015 -3.6132 -0.1163 11 6 1.5034 -4.9213 -0.0167 12 6 2.6076 -5.9221 0.3906 13 6 3.6873 -5.0644 1.0720 14 6 3.1572 -3.6199 1.0223 15 6 3.8719 -5.5045 2.5212 16 7 4.9472 -4.7114 3.1368 17 6 6.2001 -4.8608 2.3824 18 6 5.9815 -4.4005 0.9386 19 8 4.9163 -5.1604 0.3585 20 1 -0.4850 -0.8400 0.0004 21 1 0.6910 -2.5954 0.9307 22 1 0.5610 -2.5202 -0.8430 23 1 0.7268 -4.8805 0.7471 24 1 1.0742 -5.1973 -0.9798 25 1 2.2121 -6.6593 1.0894 26 1 3.0161 -6.4156 -0.4913 27 1 3.9733 -2.9211 0.8382 28 1 2.6441 -3.3707 1.9512 29 1 2.9436 -5.3470 3.0704 30 1 4.1373 -6.5613 2.5495 31 1 4.6834 -3.7403 3.2109 32 1 6.5054 -5.9072 2.3881 33 1 6.9775 -4.2524 2.8443 34 1 6.8947 -4.5565 0.3645 35 1 5.7208 -3.3422 0.9295 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719986634.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:31 Heat of formation + Delta-G solvation = -63.181063 kcal Electronic energy + Delta-G solvation = -16643.942285 eV Core-core repulsion = 14061.518910 eV Total energy + Delta-G solvation = -2582.423376 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.58563 -38.51346 -35.56373 -35.43759 -33.09455 -30.66004 -28.83512 -27.68458 -25.85581 -24.73126 -23.29001 -21.98336 -20.65578 -18.97056 -17.89343 -17.33450 -17.06426 -16.21289 -16.00077 -15.71088 -15.31938 -15.21148 -14.76048 -14.30529 -13.91903 -13.57500 -13.26185 -13.11016 -12.83476 -12.59562 -12.41606 -12.34101 -12.16414 -12.11580 -11.98486 -11.94794 -10.95043 -10.81653 -10.65441 -9.38731 -9.25421 -8.76879 -6.47335 1.48273 1.57347 1.75455 2.49940 2.68715 3.02747 3.11584 3.21234 3.53452 3.65541 3.78306 4.07178 4.11689 4.15431 4.28223 4.36120 4.43775 4.56874 4.60289 4.66835 4.72675 4.78057 4.84032 4.88878 4.92116 5.01530 5.11788 5.58219 5.80512 5.87383 6.08523 6.18120 6.24897 6.29721 6.52198 7.33356 8.63183 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.030284 B = 0.008382 C = 0.007211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.365201 B = 3339.855804 C = 3882.054724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.035 4.035 3 Si 1.122 2.878 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.279 1.279 7 C -0.603 4.603 8 H 0.049 0.951 9 C 0.184 3.816 10 N -0.517 5.517 11 C 0.023 3.977 12 C -0.097 4.097 13 C 0.079 3.921 14 C 0.035 3.965 15 C 0.046 3.954 16 N -0.686 5.686 17 C 0.027 3.973 18 C 0.012 3.988 19 O -0.379 6.379 20 H 0.254 0.746 21 H -0.038 1.038 22 H 0.000 1.000 23 H 0.038 0.962 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.032 0.968 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.340 0.660 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.669 -11.443 5.238 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.233 4.233 3 Si 0.943 3.057 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.204 1.204 7 C -0.641 4.641 8 H 0.068 0.932 9 C 0.057 3.943 10 N -0.241 5.241 11 C -0.105 4.105 12 C -0.135 4.135 13 C 0.037 3.963 14 C -0.093 4.093 15 C -0.085 4.085 16 N -0.314 5.314 17 C -0.102 4.102 18 C -0.066 4.066 19 O -0.298 6.298 20 H 0.063 0.937 21 H -0.020 1.020 22 H 0.018 0.982 23 H 0.056 0.944 24 H 0.098 0.902 25 H 0.128 0.872 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.158 0.842 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.930 -10.349 5.044 15.875 hybrid contribution -1.021 -0.741 -0.152 1.271 sum 9.909 -11.090 4.891 15.655 Atomic orbital electron populations 1.70900 1.07848 1.29716 1.48640 1.27449 0.96547 1.06705 0.92567 0.82871 0.74136 0.70836 0.77860 1.19880 1.19370 1.20416 1.22253 0.94523 0.92320 1.55010 0.93247 1.19703 0.91404 0.90697 0.92542 1.65317 1.15637 1.02017 1.41136 1.23255 0.96323 0.90022 1.00898 1.22245 0.92679 0.96724 1.01831 1.22648 0.85528 0.93678 0.94481 1.23339 0.96390 0.97268 0.92338 1.22587 0.96023 0.99629 0.90227 1.60992 1.04013 1.15212 1.51190 1.22698 0.92828 1.03777 0.90900 1.23497 0.91134 0.94855 0.97129 1.87983 1.19006 1.70136 1.52694 0.93660 1.02038 0.98185 0.94410 0.90233 0.87246 0.89700 0.92112 0.94937 0.89467 0.88298 0.84215 0.89118 0.87715 0.86560 0.94402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.43 13.65 21.45 0.29 -58.14 16 2 C -0.04 -2.05 5.46 84.65 0.46 -1.59 16 3 Si 1.12 51.00 29.90 68.60 2.05 53.05 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.60 -35.43 8.70 25.60 0.22 -35.21 16 8 H 0.05 2.89 6.84 -2.91 -0.02 2.88 16 9 C 0.18 10.09 4.02 85.56 0.34 10.43 16 10 N -0.52 -23.79 5.44 -886.27 -4.82 -28.61 16 11 C 0.02 0.84 6.51 86.48 0.56 1.40 16 12 C -0.10 -2.76 6.45 31.38 0.20 -2.56 16 13 C 0.08 2.42 1.04 -10.34 -0.01 2.41 16 14 C 0.04 1.41 4.08 86.28 0.35 1.76 16 15 C 0.05 1.13 5.17 86.12 0.45 1.58 16 16 N -0.69 -16.51 6.90 -513.69 -3.55 -20.05 16 17 C 0.03 0.57 6.74 86.32 0.58 1.15 16 18 C 0.01 0.30 6.73 72.02 0.48 0.78 16 19 O -0.38 -12.10 10.22 -148.98 -1.52 -13.62 16 20 H 0.25 16.13 7.19 -92.71 -0.67 15.47 16 21 H -0.04 -2.17 7.97 -2.39 -0.02 -2.19 16 22 H 0.00 0.01 7.82 -2.38 -0.02 -0.01 16 23 H 0.04 1.35 7.90 -2.39 -0.02 1.33 16 24 H 0.08 2.77 8.14 -2.39 -0.02 2.76 16 25 H 0.11 2.36 7.70 -2.39 -0.02 2.34 16 26 H 0.08 2.40 7.97 -2.39 -0.02 2.38 16 27 H 0.06 2.64 5.32 -2.38 -0.01 2.63 16 28 H 0.03 1.35 7.59 -2.39 -0.02 1.33 16 29 H 0.09 2.12 8.03 -2.39 -0.02 2.10 16 30 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.34 8.79 8.25 -89.69 -0.74 8.05 16 32 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.04 1.12 6.33 -2.39 -0.02 1.10 16 Total: -1.00 -68.92 271.95 -3.46 -72.38 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.44 Total: 14.84 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 3.65 Total: -19.85 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -8.07 Total: -106.80 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.52 Total: -13.62 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Total: -68.92 -3.46 -72.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719986634.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.197 kcal (2) G-P(sol) polarization free energy of solvation -68.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds