Wall clock time and date at job start Mon Mar 30 2020 03:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47022 * 2 1 4 4 C 1.50701 * 112.93494 * 295.49431 * 3 2 1 5 5 O 1.21276 * 119.99656 * 112.20964 * 4 3 2 6 6 N 1.34775 * 119.99799 * 292.20095 * 4 3 2 7 7 C 1.46502 * 119.99711 * 183.76807 * 6 4 3 8 8 H 1.09003 * 109.47084 * 325.00322 * 7 6 4 9 9 C 1.52993 * 109.47329 * 85.00129 * 7 6 4 10 10 C 1.50698 * 109.47115 * 205.00432 * 7 6 4 11 11 H 1.08003 * 119.99784 * 354.33636 * 10 7 6 12 12 C 1.37884 * 120.00214 * 174.33821 * 10 7 6 13 13 N 1.31510 * 119.99608 * 161.36344 * 12 10 7 14 14 Si 1.86792 * 119.99896 * 341.36951 * 12 10 7 15 15 H 1.48499 * 109.47400 * 269.99773 * 14 12 10 16 16 H 1.48504 * 109.47460 * 29.99768 * 14 12 10 17 17 H 1.48502 * 109.47397 * 149.99690 * 14 12 10 18 18 C 1.53936 * 113.83098 * 67.15222 * 3 2 1 19 19 N 1.47966 * 86.18024 * 90.65243 * 18 3 2 20 20 C 1.47967 * 90.76266 * 24.68776 * 19 18 3 21 21 H 1.09007 * 109.46951 * 184.96208 * 1 2 3 22 22 H 1.08999 * 109.47331 * 304.96251 * 1 2 3 23 23 H 1.08997 * 109.46624 * 64.96540 * 1 2 3 24 24 H 1.09000 * 109.47169 * 239.99751 * 2 1 3 25 25 H 1.09008 * 109.46971 * 119.99789 * 2 1 3 26 26 H 0.96996 * 120.00810 * 3.76775 * 6 4 3 27 27 H 1.09000 * 109.47360 * 294.08875 * 9 7 6 28 28 H 1.09003 * 109.47214 * 54.08388 * 9 7 6 29 29 H 1.09003 * 109.47473 * 174.08725 * 9 7 6 30 30 H 0.96996 * 120.00833 * 354.92856 * 13 12 10 31 31 H 1.08999 * 113.75945 * 204.96738 * 18 3 2 32 32 H 1.08998 * 113.75842 * 336.33727 * 18 3 2 33 33 H 1.00893 * 111.00163 * 137.58191 * 19 18 3 34 34 H 1.09000 * 113.75405 * 220.99536 * 20 19 18 35 35 H 1.09000 * 113.75373 * 89.63165 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6726 2.1953 -1.2527 5 8 0.8818 3.1133 -1.1986 6 7 2.2228 1.8485 -2.4332 7 6 1.9297 2.6316 -3.6361 8 1 0.9005 2.9883 -3.5956 9 6 2.8812 3.8273 -3.7108 10 6 2.1137 1.7662 -4.8560 11 1 2.5059 0.7651 -4.7537 12 6 1.7815 2.2524 -6.1028 13 7 2.2636 1.6772 -7.1827 14 14 0.6468 3.7280 -6.2578 15 1 -0.7614 3.2635 -6.3375 16 1 0.8119 4.6063 -5.0717 17 1 0.9877 4.4877 -7.4874 18 6 1.7319 2.2112 1.2976 19 7 3.0418 1.7221 1.7815 20 6 3.5232 1.5753 0.3900 21 1 -0.3633 -1.0239 0.0889 22 1 -0.3634 0.5889 0.8422 23 1 -0.3632 0.4349 -0.9311 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8901 26 1 2.8128 1.0805 -2.4863 27 1 2.6758 4.5073 -2.8840 28 1 3.9112 3.4766 -3.6453 29 1 2.7347 4.3499 -4.6560 30 1 2.9100 0.9586 -7.1021 31 1 1.6876 3.2925 1.1676 32 1 0.8823 1.8132 1.8526 33 1 3.5450 2.4521 2.2630 34 1 4.1049 0.6693 0.2200 35 1 4.0029 2.4706 -0.0054 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722962761.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:03 Heat of formation + Delta-G solvation = -20.325820 kcal Electronic energy + Delta-G solvation = -16373.870230 eV Core-core repulsion = 13793.305197 eV Total energy + Delta-G solvation = -2580.565033 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.58737 -37.84329 -34.93465 -33.03577 -32.34904 -29.79157 -27.23427 -26.00913 -24.85202 -22.80541 -22.08605 -19.88639 -18.81569 -17.73258 -17.01413 -15.68379 -15.45721 -14.64414 -14.23776 -14.07994 -13.47045 -13.31307 -13.05717 -12.72789 -12.58117 -12.18722 -12.01761 -11.81339 -11.58427 -11.36555 -11.10145 -10.64060 -10.57593 -10.44554 -10.18975 -9.74750 -9.27799 -9.09631 -8.87718 -8.37111 -8.16526 -6.59332 -4.23064 3.18726 3.39665 3.43534 3.58640 3.84950 4.07684 4.33104 4.42422 4.84587 5.08903 5.14299 5.27667 5.33802 5.43070 5.56014 5.62858 5.71534 5.80344 5.95763 6.05324 6.12726 6.21890 6.35861 6.42294 6.49706 6.64333 6.93487 7.10210 7.26883 7.38225 7.65865 8.22864 8.47647 8.69219 8.96843 9.44698 10.79471 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.038612 B = 0.007546 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.989456 B = 3709.544033 C = 3779.753300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.110 4.110 4 C 0.515 3.485 5 O -0.556 6.556 6 N -0.698 5.698 7 C 0.240 3.760 8 H 0.043 0.957 9 C -0.152 4.152 10 C -0.619 4.619 11 H 0.062 0.938 12 C 0.042 3.958 13 N -0.896 5.896 14 Si 1.037 2.963 15 H -0.283 1.283 16 H -0.270 1.270 17 H -0.284 1.284 18 C 0.032 3.968 19 N -0.633 5.633 20 C 0.019 3.981 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.392 0.608 27 H 0.027 0.973 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.270 0.730 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.318 0.682 34 H 0.094 0.906 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 -0.985 14.429 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.126 4.126 3 C -0.114 4.114 4 C 0.299 3.701 5 O -0.435 6.435 6 N -0.345 5.345 7 C 0.137 3.863 8 H 0.061 0.939 9 C -0.210 4.210 10 C -0.657 4.657 11 H 0.080 0.920 12 C -0.165 4.165 13 N -0.529 5.529 14 Si 0.864 3.136 15 H -0.210 1.210 16 H -0.195 1.195 17 H -0.209 1.209 18 C -0.098 4.098 19 N -0.258 5.258 20 C -0.112 4.112 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.225 0.775 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.112 0.888 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.074 -0.159 13.632 13.633 hybrid contribution 1.330 -0.437 0.600 1.523 sum 1.256 -0.596 14.231 14.299 Atomic orbital electron populations 1.21756 0.95202 1.01481 1.02524 1.21200 0.96421 0.92160 1.02855 1.22653 0.96997 0.97797 0.93976 1.20223 0.81055 0.84058 0.84726 1.90634 1.35051 1.31402 1.86421 1.46271 1.48113 1.31827 1.08323 1.19066 0.95201 0.89689 0.82378 0.93931 1.22395 1.00178 0.98670 0.99778 1.22061 1.50255 1.01790 0.91586 0.92004 1.25654 0.97396 1.01812 0.91595 1.70822 1.27502 1.24152 1.30386 0.84160 0.76722 0.76469 0.76254 1.20959 1.19516 1.20943 1.23635 0.94109 0.98934 0.93159 1.66898 1.04274 1.41743 1.12856 1.23750 0.95074 1.02507 0.89855 0.92522 0.92518 0.92342 0.91268 0.90305 0.77478 0.95436 0.93808 0.92569 0.91993 0.90632 0.88965 0.86974 0.88766 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.61 37.16 0.36 -1.67 16 2 C -0.09 -1.15 5.33 -26.73 -0.14 -1.29 16 3 C -0.11 -1.59 0.81 -154.72 -0.12 -1.71 16 4 C 0.52 9.81 5.98 -10.99 -0.07 9.74 16 5 O -0.56 -12.58 15.84 5.56 0.09 -12.49 16 6 N -0.70 -14.10 5.07 -54.94 -0.28 -14.38 16 7 C 0.24 5.78 2.14 -69.09 -0.15 5.63 16 8 H 0.04 1.12 6.02 -51.93 -0.31 0.81 16 9 C -0.15 -3.42 8.85 37.15 0.33 -3.09 16 10 C -0.62 -16.72 8.99 -34.44 -0.31 -17.03 16 11 H 0.06 1.74 7.96 -52.48 -0.42 1.32 16 12 C 0.04 1.19 5.28 -17.82 -0.09 1.09 16 13 N -0.90 -26.60 13.70 55.43 0.76 -25.84 16 14 Si 1.04 25.11 26.26 -169.99 -4.46 20.64 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.27 -6.23 5.76 56.52 0.33 -5.91 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 C 0.03 0.42 7.51 -2.76 -0.02 0.40 16 19 N -0.63 -7.37 8.37 -116.76 -0.98 -8.35 16 20 C 0.02 0.23 8.02 -2.76 -0.02 0.21 16 21 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 22 H 0.06 0.72 6.77 -51.93 -0.35 0.36 16 23 H 0.06 0.93 7.71 -51.93 -0.40 0.53 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.08 0.93 8.02 -51.92 -0.42 0.51 16 26 H 0.39 7.15 8.53 -40.82 -0.35 6.80 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.29 5.42 -51.93 -0.28 1.00 16 30 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 31 H 0.08 1.07 7.74 -51.93 -0.40 0.67 16 32 H 0.09 1.15 6.87 -51.93 -0.36 0.79 16 33 H 0.32 3.16 8.91 -39.30 -0.35 2.81 16 34 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 35 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 LS Contribution 283.16 15.07 4.27 4.27 Total: -1.00 -30.59 283.16 -6.24 -36.83 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.40 Total: 7.04 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.24 Total: -7.71 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.50 Total: -48.58 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.49 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -4.46 Total: 20.64 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.59 -6.24 -36.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722962761.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.504 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds