Wall clock time and date at job start Mon Mar 30 2020 03:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47022 * 2 1 4 4 C 1.50701 * 112.93494 * 295.49431 * 3 2 1 5 5 O 1.21276 * 119.99656 * 112.20964 * 4 3 2 6 6 N 1.34775 * 119.99799 * 292.20095 * 4 3 2 7 7 C 1.46502 * 119.99711 * 183.76807 * 6 4 3 8 8 H 1.09003 * 109.47084 * 325.00322 * 7 6 4 9 9 C 1.52993 * 109.47329 * 85.00129 * 7 6 4 10 10 C 1.50698 * 109.47115 * 205.00432 * 7 6 4 11 11 H 1.08003 * 119.99784 * 354.33636 * 10 7 6 12 12 C 1.37884 * 120.00214 * 174.33821 * 10 7 6 13 13 N 1.31510 * 119.99608 * 161.36344 * 12 10 7 14 14 Si 1.86792 * 119.99896 * 341.36951 * 12 10 7 15 15 H 1.48499 * 109.47400 * 269.99773 * 14 12 10 16 16 H 1.48504 * 109.47460 * 29.99768 * 14 12 10 17 17 H 1.48502 * 109.47397 * 149.99690 * 14 12 10 18 18 C 1.53936 * 113.83098 * 67.15222 * 3 2 1 19 19 N 1.47966 * 86.18024 * 90.65243 * 18 3 2 20 20 C 1.47967 * 90.76266 * 24.68776 * 19 18 3 21 21 H 1.09007 * 109.46951 * 184.96208 * 1 2 3 22 22 H 1.08999 * 109.47331 * 304.96251 * 1 2 3 23 23 H 1.08997 * 109.46624 * 64.96540 * 1 2 3 24 24 H 1.09000 * 109.47169 * 239.99751 * 2 1 3 25 25 H 1.09008 * 109.46971 * 119.99789 * 2 1 3 26 26 H 0.96996 * 120.00810 * 3.76775 * 6 4 3 27 27 H 1.09000 * 109.47360 * 294.08875 * 9 7 6 28 28 H 1.09003 * 109.47214 * 54.08388 * 9 7 6 29 29 H 1.09003 * 109.47473 * 174.08725 * 9 7 6 30 30 H 0.96996 * 120.00833 * 354.92856 * 13 12 10 31 31 H 1.08999 * 113.75945 * 204.96738 * 18 3 2 32 32 H 1.08998 * 113.75842 * 336.33727 * 18 3 2 33 33 H 1.00893 * 111.00163 * 137.58191 * 19 18 3 34 34 H 1.09000 * 113.75405 * 220.99536 * 20 19 18 35 35 H 1.09000 * 113.75373 * 89.63165 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6726 2.1953 -1.2527 5 8 0.8818 3.1133 -1.1986 6 7 2.2228 1.8485 -2.4332 7 6 1.9297 2.6316 -3.6361 8 1 0.9005 2.9883 -3.5956 9 6 2.8812 3.8273 -3.7108 10 6 2.1137 1.7662 -4.8560 11 1 2.5059 0.7651 -4.7537 12 6 1.7815 2.2524 -6.1028 13 7 2.2636 1.6772 -7.1827 14 14 0.6468 3.7280 -6.2578 15 1 -0.7614 3.2635 -6.3375 16 1 0.8119 4.6063 -5.0717 17 1 0.9877 4.4877 -7.4874 18 6 1.7319 2.2112 1.2976 19 7 3.0418 1.7221 1.7815 20 6 3.5232 1.5753 0.3900 21 1 -0.3633 -1.0239 0.0889 22 1 -0.3634 0.5889 0.8422 23 1 -0.3632 0.4349 -0.9311 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8901 26 1 2.8128 1.0805 -2.4863 27 1 2.6758 4.5073 -2.8840 28 1 3.9112 3.4766 -3.6453 29 1 2.7347 4.3499 -4.6560 30 1 2.9100 0.9586 -7.1021 31 1 1.6876 3.2925 1.1676 32 1 0.8823 1.8132 1.8526 33 1 3.5450 2.4521 2.2630 34 1 4.1049 0.6693 0.2200 35 1 4.0029 2.4706 -0.0054 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722962761.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:02 Heat of formation + Delta-G solvation = -44.766898 kcal Electronic energy + Delta-G solvation = -16374.930074 eV Core-core repulsion = 13793.305197 eV Total energy + Delta-G solvation = -2581.624878 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.83540 -39.29290 -36.78414 -34.54657 -33.94324 -31.57109 -28.41439 -27.03206 -26.88320 -23.95676 -23.55697 -21.64441 -20.48466 -19.25491 -18.48329 -17.26964 -16.68230 -16.25183 -15.57348 -15.35634 -15.14534 -14.66473 -14.49635 -14.36031 -14.08048 -13.92004 -13.43589 -13.29029 -13.05980 -12.78518 -12.51177 -12.22227 -12.11698 -11.71452 -11.63426 -11.48929 -11.18450 -10.69353 -10.52886 -9.97649 -9.91613 -8.81272 -6.45554 1.46064 1.46400 1.68304 1.69632 2.40071 2.41749 2.97419 2.99848 3.22826 3.73324 3.96245 4.08358 4.29853 4.37807 4.46078 4.53027 4.57366 4.66959 4.74603 4.75627 4.78062 4.96172 5.03944 5.05158 5.09087 5.18212 5.35737 5.40640 5.61641 5.64902 6.00008 6.21673 6.51091 6.81917 7.25409 7.40434 8.56700 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.038612 B = 0.007546 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.989456 B = 3709.544033 C = 3779.753300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 C -0.111 4.111 4 C 0.515 3.485 5 O -0.593 6.593 6 N -0.699 5.699 7 C 0.243 3.757 8 H 0.021 0.979 9 C -0.145 4.145 10 C -0.615 4.615 11 H 0.041 0.959 12 C -0.001 4.001 13 N -0.925 5.925 14 Si 1.070 2.930 15 H -0.277 1.277 16 H -0.255 1.255 17 H -0.277 1.277 18 C 0.034 3.966 19 N -0.622 5.622 20 C 0.025 3.975 21 H 0.075 0.925 22 H 0.062 0.938 23 H 0.024 0.976 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.402 0.598 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.260 0.740 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.332 0.668 34 H 0.112 0.888 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 -0.976 16.293 16.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.122 4.122 3 C -0.115 4.115 4 C 0.302 3.698 5 O -0.475 6.475 6 N -0.347 5.347 7 C 0.138 3.862 8 H 0.039 0.961 9 C -0.204 4.204 10 C -0.653 4.653 11 H 0.060 0.940 12 C -0.202 4.202 13 N -0.559 5.559 14 Si 0.893 3.107 15 H -0.203 1.203 16 H -0.179 1.179 17 H -0.202 1.202 18 C -0.097 4.097 19 N -0.248 5.248 20 C -0.106 4.106 21 H 0.094 0.906 22 H 0.081 0.919 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.119 0.881 26 H 0.237 0.763 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.145 0.855 34 H 0.130 0.870 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.316 -0.171 15.527 15.531 hybrid contribution 1.224 -0.502 0.074 1.325 sum 1.540 -0.673 15.601 15.691 Atomic orbital electron populations 1.21756 0.95630 1.02551 1.00932 1.21226 0.96006 0.91157 1.03822 1.22751 0.99002 0.98148 0.91594 1.21017 0.79716 0.83598 0.85460 1.90610 1.36574 1.33242 1.87047 1.46124 1.48678 1.32012 1.07865 1.18784 0.94532 0.90079 0.82831 0.96074 1.22276 1.00264 0.97994 0.99841 1.22214 1.48965 1.01242 0.92873 0.94029 1.26758 0.98138 1.03685 0.91645 1.70918 1.28709 1.25030 1.31272 0.83715 0.75524 0.74451 0.77047 1.20257 1.17908 1.20248 1.23608 0.95362 0.98148 0.92545 1.66883 1.03507 1.42075 1.12317 1.23782 0.93578 1.03302 0.89903 0.90558 0.91922 0.95670 0.91401 0.88105 0.76334 0.94545 0.92745 0.93103 0.93045 0.91840 0.88038 0.85473 0.86954 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.61 71.98 0.69 -3.09 16 2 C -0.08 -1.99 5.33 30.60 0.16 -1.82 16 3 C -0.11 -2.97 0.81 -52.28 -0.04 -3.02 16 4 C 0.52 19.16 5.98 87.66 0.52 19.68 16 5 O -0.59 -26.65 15.84 -3.02 -0.05 -26.70 16 6 N -0.70 -27.76 5.07 -446.11 -2.26 -30.02 16 7 C 0.24 11.58 2.14 44.24 0.09 11.67 16 8 H 0.02 1.12 6.02 -2.39 -0.01 1.10 16 9 C -0.15 -6.37 8.85 71.98 0.64 -5.73 16 10 C -0.62 -33.40 8.99 25.60 0.23 -33.17 16 11 H 0.04 2.38 7.96 -2.91 -0.02 2.36 16 12 C 0.00 -0.05 5.28 84.66 0.45 0.40 16 13 N -0.92 -55.56 13.70 21.45 0.29 -55.27 16 14 Si 1.07 50.42 26.26 68.60 1.80 52.23 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 16 H -0.25 -11.29 5.76 99.48 0.57 -10.72 16 17 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 18 C 0.03 0.82 7.51 86.41 0.65 1.47 16 19 N -0.62 -12.48 8.37 -523.32 -4.38 -16.86 16 20 C 0.02 0.54 8.02 86.41 0.69 1.23 16 21 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 22 H 0.06 1.47 6.77 -2.39 -0.02 1.45 16 23 H 0.02 0.77 7.71 -2.39 -0.02 0.76 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.10 2.00 8.02 -2.38 -0.02 1.98 16 26 H 0.40 14.31 8.53 -92.71 -0.79 13.52 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 28 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.05 2.26 5.42 -2.39 -0.01 2.24 16 30 H 0.26 15.62 8.73 -92.71 -0.81 14.81 16 31 H 0.06 1.70 7.74 -2.39 -0.02 1.69 16 32 H 0.10 2.27 6.87 -2.39 -0.02 2.26 16 33 H 0.33 5.53 8.91 -89.70 -0.80 4.73 16 34 H 0.11 2.08 8.10 -2.39 -0.02 2.06 16 35 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 Total: -1.00 -65.19 283.16 -1.18 -66.37 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.67 Total: 22.64 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 4.09 Total: -12.38 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -6.35 Total: -102.16 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.70 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 1.80 Total: 52.23 kcal Total: -65.19 -1.18 -66.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722962761.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.600 kcal (2) G-P(sol) polarization free energy of solvation -65.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds