Wall clock time and date at job start Mon Mar 30 2020 03:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47117 * 269.99861 * 3 2 1 5 5 H 1.48501 * 109.47010 * 29.99932 * 3 2 1 6 6 H 1.48506 * 109.47147 * 149.99518 * 3 2 1 7 7 C 1.37880 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47254 * 179.97438 * 12 11 10 14 14 C 1.47487 * 110.99673 * 91.52576 * 13 12 11 15 15 C 1.53519 * 87.92921 * 138.70357 * 14 13 12 16 16 C 1.47476 * 110.99917 * 187.49642 * 13 12 11 17 17 H 1.09000 * 113.47696 * 336.06416 * 16 13 12 18 18 C 1.50698 * 113.47506 * 106.53399 * 16 13 12 19 19 N 1.34778 * 119.99829 * 179.97438 * 18 16 13 20 20 O 1.21277 * 120.00299 * 359.97438 * 18 16 13 21 21 H 0.97000 * 120.00500 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 23 23 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 24 24 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 25 25 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 26 26 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 27 27 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 28 28 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 29 29 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 30 30 H 1.08998 * 113.47550 * 253.46938 * 14 13 12 31 31 H 1.08996 * 113.47799 * 23.87581 * 14 13 12 32 32 H 1.09007 * 114.16792 * 87.62291 * 15 14 13 33 33 H 1.08999 * 114.16824 * 220.32699 * 15 14 13 34 34 H 0.96998 * 120.00138 * 359.97438 * 19 18 16 35 35 H 0.97009 * 119.99605 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0789 0.0028 13 7 7.5306 -4.0789 0.0033 14 6 8.0586 -4.1152 1.3800 15 6 9.1150 -5.1151 0.8890 16 6 8.0592 -5.4440 -0.1758 17 1 7.3616 -6.2234 0.1306 18 6 8.6421 -5.6873 -1.5440 19 7 9.1633 -6.8920 -1.8500 20 8 8.6423 -4.7991 -2.3698 21 1 -0.4851 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8912 23 1 3.8752 -0.6803 -0.8888 24 1 3.6587 -3.1501 -0.8893 25 1 3.6579 -3.1505 0.8907 26 1 5.9142 -2.1229 0.8927 27 1 5.9156 -2.1222 -0.8872 28 1 5.6990 -4.5929 -0.8875 29 1 5.6976 -4.5927 0.8925 30 1 8.4796 -3.1651 1.7088 31 1 7.3604 -4.5391 2.1017 32 1 10.0186 -4.6513 0.4933 33 1 9.3160 -5.9296 1.5849 34 1 9.1635 -7.6023 -1.1894 35 1 9.5382 -7.0487 -2.7309 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757158872.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:40 Heat of formation + Delta-G solvation = -19.200395 kcal Electronic energy + Delta-G solvation = -15275.673030 eV Core-core repulsion = 12695.156799 eV Total energy + Delta-G solvation = -2580.516231 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.87860 -38.39072 -35.02294 -33.79194 -32.55165 -30.52620 -27.44623 -27.19277 -24.03676 -21.87592 -21.10227 -20.12186 -19.69733 -17.72520 -17.08473 -16.57861 -16.00405 -15.33303 -14.83295 -14.52975 -14.18336 -13.86828 -13.14791 -12.92190 -12.66301 -12.13233 -11.93246 -11.72829 -11.50408 -11.20527 -10.93267 -10.71842 -10.39705 -9.96087 -9.87255 -9.81144 -9.61225 -9.41871 -9.09282 -8.92426 -8.47084 -5.98252 -3.95550 2.47800 3.17026 3.37141 3.43616 3.49036 3.94579 4.08437 4.51997 4.52843 4.75405 4.91400 5.05544 5.14117 5.31932 5.36316 5.43060 5.57129 5.75801 5.82411 5.95334 6.10813 6.25696 6.50387 6.57408 6.73298 6.83870 6.91548 7.06887 7.16247 7.41220 7.54275 7.87409 8.14545 8.61219 9.06878 9.65085 11.15382 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.047996 B = 0.004476 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.240498 B = 6253.868719 C = 6351.490086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.110 4.110 12 C 0.021 3.979 13 N -0.442 5.442 14 C -0.003 4.003 15 C -0.129 4.129 16 C -0.001 4.001 17 H 0.099 0.901 18 C 0.526 3.474 19 N -0.860 5.860 20 O -0.517 6.517 21 H 0.262 0.738 22 H 0.014 0.986 23 H 0.011 0.989 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.399 0.601 35 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.121 -15.162 2.619 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.088 0.912 9 C -0.052 4.052 10 C -0.140 4.140 11 C -0.148 4.148 12 C -0.107 4.107 13 N -0.165 5.165 14 C -0.132 4.132 15 C -0.167 4.167 16 C -0.114 4.114 17 H 0.117 0.883 18 C 0.309 3.691 19 N -0.425 5.425 20 O -0.390 6.390 21 H 0.072 0.928 22 H 0.033 0.967 23 H 0.030 0.970 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.227 0.773 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 20.009 -13.765 1.737 24.349 hybrid contribution 0.017 -0.242 0.441 0.503 sum 20.026 -14.006 2.178 24.535 Atomic orbital electron populations 1.69924 1.06312 1.26802 1.51569 1.25046 0.94734 0.99221 0.94627 0.86758 0.80350 0.83523 0.78562 1.20276 1.21469 1.18975 1.21196 0.89712 0.94378 1.50408 0.91165 1.19569 0.96889 0.92489 0.96220 1.21432 0.91906 0.99835 1.00786 1.21546 0.97035 0.93975 1.02209 1.22825 0.87114 0.99795 1.00988 1.68882 1.10723 1.19390 1.17495 1.23840 0.96789 1.00647 0.91889 1.23135 0.97399 0.99702 0.96452 1.23441 0.99022 0.95477 0.93444 0.88297 1.20322 0.77661 0.81984 0.89086 1.43860 1.65248 1.14353 1.19035 1.90779 1.55357 1.43194 1.49676 0.92833 0.96726 0.97022 0.92925 0.93112 0.92582 0.91550 0.90988 0.93688 0.89050 0.90725 0.88520 0.89852 0.77337 0.76887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.80 13.96 55.43 0.77 -28.03 16 2 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.63 27.47 -169.99 -4.67 17.96 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.27 -6.57 6.54 56.52 0.37 -6.21 16 7 C -0.52 -15.43 9.66 -34.44 -0.33 -15.76 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 10 C -0.10 -2.11 5.15 -26.74 -0.14 -2.24 16 11 C -0.11 -1.93 5.53 -26.74 -0.15 -2.08 16 12 C 0.02 0.30 4.77 -3.83 -0.02 0.29 16 13 N -0.44 -5.95 5.76 -237.90 -1.37 -7.32 16 14 C 0.00 -0.03 7.70 -7.53 -0.06 -0.09 16 15 C -0.13 -1.00 8.00 -26.19 -0.21 -1.21 16 16 C 0.00 -0.01 3.49 -72.58 -0.25 -0.26 16 17 H 0.10 0.78 7.91 -51.93 -0.41 0.37 16 18 C 0.53 6.10 7.68 -10.99 -0.08 6.01 16 19 N -0.86 -5.71 8.87 31.22 0.28 -5.43 16 20 O -0.52 -8.85 17.50 5.56 0.10 -8.75 16 21 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 22 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 23 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 29 H 0.04 0.58 7.35 -51.93 -0.38 0.20 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.67 7.44 -51.93 -0.39 0.28 16 32 H 0.10 0.82 8.11 -51.93 -0.42 0.39 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.40 1.29 8.83 -40.82 -0.36 0.93 16 35 H 0.40 2.36 8.93 -40.82 -0.36 1.99 16 LS Contribution 292.41 15.07 4.41 4.41 Total: -1.00 -36.17 292.41 -7.57 -43.74 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.64 Total: -2.60 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -1.45 Total: -13.97 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: -0.32 Total: -40.78 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.10 Total: -8.75 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -36.17 -7.57 -43.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757158872.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.539 kcal (2) G-P(sol) polarization free energy of solvation -36.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds