Wall clock time and date at job start Mon Mar 30 2020 03:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47117 * 269.99861 * 3 2 1 5 5 H 1.48501 * 109.47010 * 29.99932 * 3 2 1 6 6 H 1.48506 * 109.47147 * 149.99518 * 3 2 1 7 7 C 1.37880 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47254 * 179.97438 * 12 11 10 14 14 C 1.47487 * 110.99673 * 91.52576 * 13 12 11 15 15 C 1.53519 * 87.92921 * 138.70357 * 14 13 12 16 16 C 1.47476 * 110.99917 * 187.49642 * 13 12 11 17 17 H 1.09000 * 113.47696 * 336.06416 * 16 13 12 18 18 C 1.50698 * 113.47506 * 106.53399 * 16 13 12 19 19 N 1.34778 * 119.99829 * 179.97438 * 18 16 13 20 20 O 1.21277 * 120.00299 * 359.97438 * 18 16 13 21 21 H 0.97000 * 120.00500 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 23 23 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 24 24 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 25 25 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 26 26 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 27 27 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 28 28 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 29 29 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 30 30 H 1.08998 * 113.47550 * 253.46938 * 14 13 12 31 31 H 1.08996 * 113.47799 * 23.87581 * 14 13 12 32 32 H 1.09007 * 114.16792 * 87.62291 * 15 14 13 33 33 H 1.08999 * 114.16824 * 220.32699 * 15 14 13 34 34 H 0.96998 * 120.00138 * 359.97438 * 19 18 16 35 35 H 0.97009 * 119.99605 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0789 0.0028 13 7 7.5306 -4.0789 0.0033 14 6 8.0586 -4.1152 1.3800 15 6 9.1150 -5.1151 0.8890 16 6 8.0592 -5.4440 -0.1758 17 1 7.3616 -6.2234 0.1306 18 6 8.6421 -5.6873 -1.5440 19 7 9.1633 -6.8920 -1.8500 20 8 8.6423 -4.7991 -2.3698 21 1 -0.4851 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8912 23 1 3.8752 -0.6803 -0.8888 24 1 3.6587 -3.1501 -0.8893 25 1 3.6579 -3.1505 0.8907 26 1 5.9142 -2.1229 0.8927 27 1 5.9156 -2.1222 -0.8872 28 1 5.6990 -4.5929 -0.8875 29 1 5.6976 -4.5927 0.8925 30 1 8.4796 -3.1651 1.7088 31 1 7.3604 -4.5391 2.1017 32 1 10.0186 -4.6513 0.4933 33 1 9.3160 -5.9296 1.5849 34 1 9.1635 -7.6023 -1.1894 35 1 9.5382 -7.0487 -2.7309 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757158872.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:40 Heat of formation + Delta-G solvation = -49.296083 kcal Electronic energy + Delta-G solvation = -15276.978077 eV Core-core repulsion = 12695.156799 eV Total energy + Delta-G solvation = -2581.821278 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.70788 -39.30935 -36.69366 -34.70892 -34.47239 -32.09555 -28.95156 -27.95766 -25.65206 -22.88310 -22.39151 -21.76482 -20.55720 -18.89213 -18.41118 -17.88635 -16.90840 -16.56152 -16.30260 -15.64835 -15.56614 -15.07128 -14.79388 -14.25901 -13.89421 -13.84786 -13.37880 -12.92029 -12.71953 -12.46839 -12.33884 -12.15163 -11.83567 -11.74051 -11.38223 -11.32866 -11.14062 -10.84311 -10.77821 -10.61737 -9.79566 -8.31225 -6.35102 1.34844 1.35737 1.48796 1.63917 2.35200 2.45455 3.03984 3.13611 3.38996 3.83408 3.92492 4.07158 4.15090 4.30158 4.38645 4.48635 4.53591 4.66980 4.81630 4.84275 4.91650 5.03326 5.12608 5.18508 5.22400 5.37155 5.54987 5.62797 5.66643 5.93389 6.05729 6.27485 6.54767 6.72471 7.29743 7.42854 8.85674 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.047996 B = 0.004476 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.240498 B = 6253.868719 C = 6351.490086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.248 1.248 7 C -0.535 4.535 8 H 0.032 0.968 9 C -0.013 4.013 10 C -0.093 4.093 11 C -0.099 4.099 12 C 0.030 3.970 13 N -0.482 5.482 14 C -0.007 4.007 15 C -0.108 4.108 16 C -0.001 4.001 17 H 0.127 0.873 18 C 0.520 3.480 19 N -0.834 5.834 20 O -0.584 6.584 21 H 0.267 0.733 22 H 0.020 0.980 23 H 0.011 0.989 24 H 0.043 0.957 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.419 0.581 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.358 -15.968 3.857 27.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.775 3.225 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.172 1.172 7 C -0.573 4.573 8 H 0.051 0.949 9 C -0.050 4.050 10 C -0.132 4.132 11 C -0.137 4.137 12 C -0.098 4.098 13 N -0.205 5.205 14 C -0.135 4.135 15 C -0.146 4.146 16 C -0.113 4.113 17 H 0.145 0.855 18 C 0.305 3.695 19 N -0.399 5.399 20 O -0.463 6.463 21 H 0.076 0.924 22 H 0.039 0.961 23 H 0.029 0.971 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.142 0.858 34 H 0.250 0.750 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 22.275 -14.649 2.999 26.829 hybrid contribution -0.717 -0.112 0.050 0.727 sum 21.558 -14.761 3.049 26.305 Atomic orbital electron populations 1.70067 1.08228 1.28197 1.52741 1.26035 0.95661 1.03559 0.94073 0.85637 0.79484 0.78245 0.79165 1.19422 1.20491 1.17170 1.21545 0.92205 0.93163 1.50340 0.94946 1.19544 0.93827 0.95458 0.96220 1.21296 0.94343 0.96946 1.00570 1.21360 0.94307 0.96445 1.01591 1.22626 0.88588 0.97293 1.01328 1.68820 1.09447 1.22229 1.20026 1.23959 0.97643 1.01314 0.90625 1.23088 0.95862 0.99947 0.95684 1.23616 1.00067 0.94544 0.93115 0.85548 1.20746 0.77262 0.82289 0.89213 1.43652 1.63108 1.13389 1.19788 1.90753 1.58385 1.45553 1.51616 0.92435 0.96135 0.97076 0.93846 0.92675 0.91928 0.93351 0.92227 0.91704 0.89681 0.89083 0.89425 0.85826 0.74951 0.76252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.59 13.96 21.45 0.30 -61.29 16 2 C 0.00 0.20 5.47 84.65 0.46 0.66 16 3 Si 0.95 46.41 27.47 68.60 1.88 48.30 16 4 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 7 C -0.53 -32.44 9.66 25.60 0.25 -32.19 16 8 H 0.03 2.14 7.99 -2.91 -0.02 2.11 16 9 C -0.01 -0.65 4.04 29.85 0.12 -0.53 16 10 C -0.09 -3.87 5.15 30.59 0.16 -3.71 16 11 C -0.10 -3.41 5.53 30.59 0.17 -3.24 16 12 C 0.03 0.83 4.77 86.30 0.41 1.24 16 13 N -0.48 -12.21 5.76 -906.56 -5.22 -17.44 16 14 C -0.01 -0.12 7.70 83.58 0.64 0.52 16 15 C -0.11 -1.30 8.00 30.94 0.25 -1.06 16 16 C 0.00 -0.01 3.49 41.45 0.14 0.14 16 17 H 0.13 1.50 7.91 -2.39 -0.02 1.48 16 18 C 0.52 11.33 7.68 87.66 0.67 12.00 16 19 N -0.83 -9.12 8.87 -173.53 -1.54 -10.66 16 20 O -0.58 -20.19 17.50 -3.02 -0.05 -20.24 16 21 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 22 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 23 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 24 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 1.77 8.11 -2.39 -0.02 1.75 16 29 H 0.06 1.51 7.35 -2.39 -0.02 1.49 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.28 7.44 -2.39 -0.02 1.26 16 32 H 0.09 1.25 8.11 -2.38 -0.02 1.23 16 33 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.42 1.24 8.83 -92.71 -0.82 0.42 16 35 H 0.41 4.02 8.93 -92.70 -0.83 3.20 16 Total: -1.00 -81.03 292.41 -1.98 -83.01 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -0.62 Total: 4.49 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 3.28 Total: -26.17 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -6.46 Total: -89.38 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.05 Total: -20.24 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.30 kcal Total: -81.03 -1.98 -83.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757158872.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.710 kcal (2) G-P(sol) polarization free energy of solvation -81.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds