Wall clock time and date at job start Mon Mar 30 2020 03:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 11 11 N 1.46891 * 109.47311 * 180.02562 * 10 9 7 12 12 C 1.47840 * 111.00257 * 169.99804 * 11 10 9 13 13 C 1.51376 * 110.66142 * 130.03747 * 12 11 10 14 14 C 1.49471 * 117.77314 * 74.74765 * 13 12 11 15 15 N 1.46449 * 112.91573 * 280.16478 * 14 13 12 16 16 C 1.35313 * 116.69484 * 83.41907 * 15 14 13 17 17 O 1.21280 * 120.85688 * 178.68157 * 16 15 14 18 18 C 1.50639 * 118.28557 * 358.69933 * 16 15 14 19 19 C 1.49061 * 111.00301 * 48.66608 * 11 10 9 20 20 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 22 22 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 23 23 H 1.09000 * 109.46984 * 300.00380 * 10 9 7 24 24 H 1.08999 * 109.46611 * 59.99865 * 10 9 7 25 25 H 1.08991 * 109.24503 * 250.34888 * 12 11 10 26 26 H 1.09005 * 109.23889 * 9.78241 * 12 11 10 27 27 H 1.09001 * 107.78341 * 196.84631 * 13 12 11 28 28 H 1.08997 * 107.78865 * 312.68942 * 13 12 11 29 29 H 1.09006 * 108.79124 * 41.04800 * 14 13 12 30 30 H 1.09000 * 108.79190 * 159.27410 * 14 13 12 31 31 H 0.97010 * 121.65209 * 263.44044 * 15 14 13 32 32 H 1.09005 * 109.48699 * 17.19864 * 18 16 15 33 33 H 1.08997 * 109.48542 * 137.26436 * 18 16 15 34 34 H 1.09000 * 109.56003 * 299.18842 * 19 11 10 35 35 H 1.09003 * 109.56262 * 59.52606 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 7 5.4906 -2.6364 -0.0009 12 6 6.0205 -3.9956 0.2389 13 6 7.0626 -4.3534 -0.7991 14 6 8.4111 -3.7198 -0.6795 15 7 8.4456 -2.3504 -1.1973 16 6 8.0326 -1.3726 -0.3580 17 8 8.0524 -0.2094 -0.7006 18 6 7.5481 -1.7661 1.0129 19 6 6.0248 -1.7173 1.0439 20 1 -0.4849 0.8401 -0.0004 21 1 3.8746 -0.6800 -0.8911 22 1 3.8753 -0.6803 0.8889 23 1 3.6586 -3.1501 0.8892 24 1 3.6580 -3.1504 -0.8907 25 1 6.4723 -4.0353 1.2300 26 1 5.2024 -4.7142 0.1881 27 1 7.1994 -5.4346 -0.7745 28 1 6.6597 -4.0949 -1.7783 29 1 8.7002 -3.7053 0.3714 30 1 9.1323 -4.3224 -1.2315 31 1 8.7492 -2.1540 -2.0975 32 1 7.8842 -2.7777 1.2409 33 1 7.9492 -1.0737 1.7530 34 1 5.6880 -0.7004 0.8422 35 1 5.6693 -2.0335 2.0246 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885777165.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:46 Heat of formation + Delta-G solvation = -28.423677 kcal Electronic energy + Delta-G solvation = -16340.409721 eV Core-core repulsion = 13759.493538 eV Total energy + Delta-G solvation = -2580.916182 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.04671 -37.43789 -35.61957 -33.07792 -31.96338 -31.18492 -28.88971 -25.91005 -24.48626 -22.76260 -21.22386 -20.24002 -18.88396 -17.19378 -16.85359 -16.61941 -15.36771 -15.09827 -14.54667 -14.15095 -13.99356 -13.63341 -13.19940 -13.00245 -12.74241 -12.42224 -11.99444 -11.63144 -11.36304 -11.29404 -11.04338 -10.79720 -10.70190 -9.96614 -9.81401 -9.70510 -9.57397 -9.16560 -8.97097 -8.50883 -7.93214 -6.02962 -4.01379 2.86712 3.35539 3.43643 3.47045 3.53157 4.18122 4.49537 4.60393 4.75466 4.95112 4.98420 5.28799 5.31833 5.39670 5.47675 5.50848 5.60923 5.80152 5.81484 5.96937 6.07021 6.18685 6.31428 6.34826 6.71684 6.99188 7.13960 7.24659 7.31862 7.45047 7.60886 7.84715 8.45762 8.53518 9.00479 9.59924 11.10172 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.034614 B = 0.007759 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.718345 B = 3607.868841 C = 4128.706560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.261 1.261 6 H -0.287 1.287 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.014 4.014 10 C 0.070 3.930 11 N -0.533 5.533 12 C 0.044 3.956 13 C -0.140 4.140 14 C 0.115 3.885 15 N -0.727 5.727 16 C 0.539 3.461 17 O -0.547 6.547 18 C -0.152 4.152 19 C 0.052 3.948 20 H 0.263 0.737 21 H 0.025 0.975 22 H 0.013 0.987 23 H 0.028 0.972 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.401 0.599 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.855 -9.725 1.439 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.185 1.185 6 H -0.213 1.213 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.057 4.057 11 N -0.258 5.258 12 C -0.084 4.084 13 C -0.179 4.179 14 C -0.010 4.010 15 N -0.381 5.381 16 C 0.326 3.674 17 O -0.424 6.424 18 C -0.193 4.193 19 C -0.076 4.076 20 H 0.073 0.927 21 H 0.043 0.957 22 H 0.031 0.969 23 H 0.046 0.954 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.237 0.763 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 17.803 -8.872 0.947 19.914 hybrid contribution 0.022 0.509 0.404 0.651 sum 17.825 -8.363 1.351 19.736 Atomic orbital electron populations 1.69914 1.06306 1.26930 1.51109 1.24981 0.94702 0.99157 0.94383 0.86825 0.80741 0.83525 0.78623 1.20292 1.18546 1.21327 1.21057 0.89329 0.94484 1.51131 0.91110 1.19687 0.96810 0.91765 0.96870 1.22219 0.83297 1.00378 0.99809 1.63797 1.10319 1.06098 1.45607 1.22083 0.97512 0.91704 0.97127 1.21059 0.95233 0.99608 1.02000 1.20757 0.97157 0.82941 1.00173 1.46079 1.67932 1.07033 1.17051 1.20565 0.74766 0.84817 0.87226 1.90719 1.54361 1.19166 1.78106 1.22032 0.98230 1.03845 0.95149 1.22461 0.91026 1.00070 0.94013 0.92726 0.95690 0.96890 0.95388 0.91198 0.93395 0.91564 0.91371 0.90836 0.90894 0.90574 0.76268 0.89226 0.88584 0.88953 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.67 27.47 -169.99 -4.67 18.00 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 7 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.34 3.43 -27.88 -0.10 -0.43 16 10 C 0.07 1.40 4.87 -3.83 -0.02 1.38 16 11 N -0.53 -8.86 4.32 -233.31 -1.01 -9.87 16 12 C 0.04 0.54 5.18 -4.13 -0.02 0.52 16 13 C -0.14 -1.36 5.33 -29.29 -0.16 -1.52 16 14 C 0.11 0.96 5.95 -5.81 -0.03 0.93 16 15 N -0.73 -8.52 5.66 -62.00 -0.35 -8.87 16 16 C 0.54 8.31 6.83 -10.77 -0.07 8.24 16 17 O -0.55 -11.05 17.98 5.56 0.10 -10.95 16 18 C -0.15 -1.96 5.33 -28.20 -0.15 -2.11 16 19 C 0.05 0.84 4.25 -2.91 -0.01 0.82 16 20 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 21 H 0.02 0.65 7.20 -51.93 -0.37 0.28 16 22 H 0.01 0.31 5.75 -51.93 -0.30 0.02 16 23 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 24 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 25 H 0.05 0.51 6.37 -51.93 -0.33 0.18 16 26 H 0.07 0.81 7.57 -51.93 -0.39 0.42 16 27 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.07 0.54 5.71 -51.93 -0.30 0.24 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.40 4.32 8.96 -40.82 -0.37 3.95 16 32 H 0.09 0.89 3.65 -51.93 -0.19 0.70 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.77 6.30 -51.93 -0.33 1.45 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 271.14 15.07 4.09 4.09 Total: -1.00 -34.50 271.14 -7.18 -41.67 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.12 Total: -0.84 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.99 Total: -5.67 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.58 Total: -46.31 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.10 Total: -10.95 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.67 Total: 18.00 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -34.50 -7.18 -41.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885777165.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.250 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds