Wall clock time and date at job start Mon Mar 30 2020 03:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 11 11 N 1.46891 * 109.47311 * 180.02562 * 10 9 7 12 12 C 1.47840 * 111.00257 * 169.99804 * 11 10 9 13 13 C 1.51376 * 110.66142 * 130.03747 * 12 11 10 14 14 C 1.49471 * 117.77314 * 74.74765 * 13 12 11 15 15 N 1.46449 * 112.91573 * 280.16478 * 14 13 12 16 16 C 1.35313 * 116.69484 * 83.41907 * 15 14 13 17 17 O 1.21280 * 120.85688 * 178.68157 * 16 15 14 18 18 C 1.50639 * 118.28557 * 358.69933 * 16 15 14 19 19 C 1.49061 * 111.00301 * 48.66608 * 11 10 9 20 20 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 22 22 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 23 23 H 1.09000 * 109.46984 * 300.00380 * 10 9 7 24 24 H 1.08999 * 109.46611 * 59.99865 * 10 9 7 25 25 H 1.08991 * 109.24503 * 250.34888 * 12 11 10 26 26 H 1.09005 * 109.23889 * 9.78241 * 12 11 10 27 27 H 1.09001 * 107.78341 * 196.84631 * 13 12 11 28 28 H 1.08997 * 107.78865 * 312.68942 * 13 12 11 29 29 H 1.09006 * 108.79124 * 41.04800 * 14 13 12 30 30 H 1.09000 * 108.79190 * 159.27410 * 14 13 12 31 31 H 0.97010 * 121.65209 * 263.44044 * 15 14 13 32 32 H 1.09005 * 109.48699 * 17.19864 * 18 16 15 33 33 H 1.08997 * 109.48542 * 137.26436 * 18 16 15 34 34 H 1.09000 * 109.56003 * 299.18842 * 19 11 10 35 35 H 1.09003 * 109.56262 * 59.52606 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 7 5.4906 -2.6364 -0.0009 12 6 6.0205 -3.9956 0.2389 13 6 7.0626 -4.3534 -0.7991 14 6 8.4111 -3.7198 -0.6795 15 7 8.4456 -2.3504 -1.1973 16 6 8.0326 -1.3726 -0.3580 17 8 8.0524 -0.2094 -0.7006 18 6 7.5481 -1.7661 1.0129 19 6 6.0248 -1.7173 1.0439 20 1 -0.4849 0.8401 -0.0004 21 1 3.8746 -0.6800 -0.8911 22 1 3.8753 -0.6803 0.8889 23 1 3.6586 -3.1501 0.8892 24 1 3.6580 -3.1504 -0.8907 25 1 6.4723 -4.0353 1.2300 26 1 5.2024 -4.7142 0.1881 27 1 7.1994 -5.4346 -0.7745 28 1 6.6597 -4.0949 -1.7783 29 1 8.7002 -3.7053 0.3714 30 1 9.1323 -4.3224 -1.2315 31 1 8.7492 -2.1540 -2.0975 32 1 7.8842 -2.7777 1.2409 33 1 7.9492 -1.0737 1.7530 34 1 5.6880 -0.7004 0.8422 35 1 5.6693 -2.0335 2.0246 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885777165.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:45 Heat of formation + Delta-G solvation = -56.207761 kcal Electronic energy + Delta-G solvation = -16341.614529 eV Core-core repulsion = 13759.493538 eV Total energy + Delta-G solvation = -2582.120991 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.13960 -38.73298 -36.75613 -35.11827 -33.00998 -32.87114 -30.35592 -27.09272 -26.05928 -24.12974 -22.27532 -21.83918 -20.00065 -19.07993 -18.20579 -17.58522 -16.70762 -16.50457 -16.07756 -15.76841 -15.27099 -14.74397 -14.72415 -14.53832 -14.09822 -13.74583 -13.37621 -13.06547 -12.90396 -12.54239 -12.40555 -12.22944 -11.88740 -11.80373 -11.59426 -11.42380 -11.23100 -10.81106 -10.75913 -9.94682 -9.21735 -8.35437 -6.38425 1.28346 1.32159 1.45741 1.71326 2.30329 2.56418 2.95854 3.00172 3.76370 3.84306 3.98992 4.08971 4.28791 4.40404 4.43572 4.52764 4.64902 4.70507 4.75499 4.83351 4.90730 4.95917 5.07777 5.13984 5.28146 5.41914 5.48902 5.59589 6.02727 6.07931 6.22885 6.25505 6.33740 6.69130 7.26609 7.38561 8.81056 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.034614 B = 0.007759 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.718345 B = 3607.868841 C = 4128.706560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.014 3.986 3 Si 0.941 3.059 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.531 4.531 8 H 0.039 0.961 9 C -0.005 4.005 10 C 0.084 3.916 11 N -0.545 5.545 12 C 0.038 3.962 13 C -0.135 4.135 14 C 0.108 3.892 15 N -0.718 5.718 16 C 0.527 3.473 17 O -0.608 6.608 18 C -0.143 4.143 19 C 0.050 3.950 20 H 0.268 0.732 21 H 0.005 0.995 22 H 0.018 0.982 23 H 0.030 0.970 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.404 0.596 32 H 0.129 0.871 33 H 0.108 0.892 34 H 0.052 0.948 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.421 -11.090 2.212 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.184 4.184 3 Si 0.765 3.235 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.205 1.205 7 C -0.569 4.569 8 H 0.058 0.942 9 C -0.043 4.043 10 C -0.044 4.044 11 N -0.270 5.270 12 C -0.089 4.089 13 C -0.174 4.174 14 C -0.015 4.015 15 N -0.370 5.370 16 C 0.315 3.685 17 O -0.490 6.490 18 C -0.182 4.182 19 C -0.078 4.078 20 H 0.077 0.923 21 H 0.024 0.976 22 H 0.037 0.963 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.131 0.869 31 H 0.241 0.759 32 H 0.146 0.854 33 H 0.127 0.873 34 H 0.070 0.930 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 20.391 -10.304 1.720 22.911 hybrid contribution -0.793 0.795 0.136 1.131 sum 19.598 -9.509 1.855 21.862 Atomic orbital electron populations 1.70035 1.07910 1.28144 1.52494 1.25833 0.95498 1.02886 0.94138 0.85793 0.79082 0.79229 0.79376 1.18663 1.18838 1.20463 1.21403 0.91708 0.93341 1.50453 0.94243 1.19540 0.93852 0.94901 0.96005 1.21871 0.86116 0.96947 0.99483 1.63748 1.07636 1.09073 1.46591 1.22291 0.98322 0.88806 0.99513 1.21046 0.94866 1.01909 0.99570 1.21083 0.97315 0.81175 1.01968 1.46194 1.66012 1.07989 1.16800 1.21095 0.74361 0.84495 0.88512 1.90685 1.57098 1.21775 1.79393 1.22009 0.95645 1.06479 0.94097 1.22424 0.93214 0.97822 0.94373 0.92339 0.97613 0.96348 0.95178 0.92141 0.90805 0.91691 0.87788 0.93222 0.88855 0.86890 0.75947 0.85375 0.87341 0.92990 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 2 C 0.01 0.85 5.47 84.65 0.46 1.31 16 3 Si 0.94 47.52 27.47 68.60 1.88 49.41 16 4 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.26 -13.36 6.54 99.48 0.65 -12.71 16 6 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.53 -31.65 9.66 25.60 0.25 -31.40 16 8 H 0.04 2.53 7.99 -2.91 -0.02 2.51 16 9 C -0.01 -0.27 3.43 29.85 0.10 -0.16 16 10 C 0.08 3.36 4.87 86.31 0.42 3.78 16 11 N -0.55 -17.37 4.32 -892.06 -3.85 -21.22 16 12 C 0.04 0.80 5.18 85.59 0.44 1.24 16 13 C -0.13 -2.07 5.33 28.93 0.15 -1.91 16 14 C 0.11 1.30 5.95 85.26 0.51 1.80 16 15 N -0.72 -14.98 5.66 -468.15 -2.65 -17.63 16 16 C 0.53 15.48 6.83 87.55 0.60 16.07 16 17 O -0.61 -24.75 17.98 -3.03 -0.05 -24.80 16 18 C -0.14 -3.28 5.33 29.64 0.16 -3.12 16 19 C 0.05 1.52 4.25 85.70 0.36 1.88 16 20 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 21 H 0.01 0.30 7.20 -2.39 -0.02 0.28 16 22 H 0.02 0.90 5.75 -2.38 -0.01 0.88 16 23 H 0.03 1.18 8.07 -2.39 -0.02 1.16 16 24 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.07 1.20 6.37 -2.39 -0.02 1.19 16 26 H 0.06 1.41 7.57 -2.38 -0.02 1.40 16 27 H 0.10 0.95 8.13 -2.39 -0.02 0.93 16 28 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 29 H 0.09 0.81 5.71 -2.38 -0.01 0.79 16 30 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.40 7.94 8.96 -92.70 -0.83 7.10 16 32 H 0.13 1.88 3.65 -2.38 -0.01 1.88 16 33 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.05 2.00 6.30 -2.39 -0.02 1.98 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -78.36 271.14 -0.71 -79.07 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.20 Total: 5.91 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 3.46 Total: -10.50 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -6.20 Total: -99.08 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.05 Total: -24.80 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.88 Total: 49.41 kcal Total: -78.36 -0.71 -79.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885777165.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.859 kcal (2) G-P(sol) polarization free energy of solvation -78.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds