Wall clock time and date at job start Mon Mar 30 2020 03:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47195 * 2 1 4 4 C 1.53000 * 109.47328 * 119.99739 * 2 1 3 5 5 C 1.52997 * 109.47060 * 60.00126 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 8 8 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 9 9 H 1.09002 * 109.46695 * 59.99734 * 8 7 6 10 10 C 1.50693 * 109.46989 * 180.02562 * 8 7 6 11 11 O 1.21305 * 119.99639 * 120.00371 * 10 8 7 12 12 N 1.34770 * 120.00420 * 299.99564 * 10 8 7 13 13 C 1.37101 * 120.00161 * 180.02562 * 12 10 8 14 14 H 1.07999 * 119.99889 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99853 * 180.02562 * 13 12 10 16 16 N 1.31405 * 119.99675 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00186 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47157 * 89.99895 * 17 15 13 19 19 H 1.48496 * 109.47225 * 210.00170 * 17 15 13 20 20 H 1.48502 * 109.47022 * 330.00293 * 17 15 13 21 21 H 1.08992 * 109.47554 * 299.99900 * 1 2 3 22 22 H 1.09004 * 109.47108 * 60.00150 * 1 2 3 23 23 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 24 24 H 1.00899 * 111.00094 * 59.99805 * 3 2 1 25 25 H 1.00901 * 111.00367 * 183.95353 * 3 2 1 26 26 H 1.09002 * 109.47398 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.47194 * 300.00476 * 4 2 1 28 28 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 29 29 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 30 30 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 32 32 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 33 33 H 1.09001 * 109.46812 * 179.97438 * 7 6 5 34 34 H 0.97000 * 119.99787 * 0.02562 * 12 10 8 35 35 H 0.97006 * 119.99970 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5301 -2.1637 1.2493 6 6 2.0400 -2.8850 0.0001 7 6 1.5301 -2.1637 -1.2492 8 6 2.0400 -0.7212 -1.2493 9 1 3.1300 -0.7213 -1.2492 10 6 1.5372 -0.0108 -2.4794 11 8 0.8399 0.9755 -2.3677 12 7 1.8623 -0.4710 -3.7037 13 6 1.4053 0.1758 -4.8228 14 1 0.7850 1.0542 -4.7233 15 6 1.7401 -0.2991 -6.0851 16 7 1.3024 0.3211 -7.1577 17 14 2.8124 -1.8190 -6.2571 18 1 1.9525 -3.0289 -6.3025 19 1 3.6041 -1.7270 -7.5100 20 1 3.7330 -1.9094 -5.0953 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6961 1.8829 0.8158 25 1 3.0262 1.4127 -0.0649 26 1 3.1300 -0.7208 1.2495 27 1 1.6766 -0.2074 2.1392 28 1 1.8930 -2.6774 2.1395 29 1 0.4401 -2.1637 1.2493 30 1 1.6764 -3.9125 -0.0001 31 1 3.1300 -2.8849 0.0001 32 1 0.4401 -2.1637 -1.2492 33 1 1.8938 -2.6774 -2.1391 34 1 2.4198 -1.2598 -3.7930 35 1 1.5359 -0.0106 -8.0389 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885784133.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:40 Heat of formation + Delta-G solvation = -70.974369 kcal Electronic energy + Delta-G solvation = -16694.956071 eV Core-core repulsion = 14112.194752 eV Total energy + Delta-G solvation = -2582.761319 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.36190 -38.85605 -35.95675 -34.64503 -33.62612 -31.94259 -29.76675 -28.15088 -26.53082 -24.07446 -22.39379 -21.13614 -20.43656 -19.18857 -17.64620 -17.04323 -16.52639 -16.25793 -15.93469 -15.31935 -14.85580 -14.73695 -14.36465 -14.28307 -13.99889 -13.49625 -13.26359 -13.01479 -12.78776 -12.46715 -12.37047 -12.06295 -11.97290 -11.93007 -11.69981 -11.36980 -11.17208 -11.01482 -10.14018 -10.00031 -9.18369 -8.36408 -5.94314 1.28765 1.34699 1.42700 2.12748 2.24743 3.02136 3.20035 3.59205 3.72135 3.89252 4.15117 4.22752 4.32126 4.40176 4.45884 4.51556 4.55742 4.80060 4.90523 5.00479 5.09607 5.11495 5.21179 5.24754 5.31783 5.38571 5.49927 5.62525 5.73770 6.05041 6.53096 6.66785 6.80353 6.99574 7.51620 8.14300 8.82103 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.036585 B = 0.008731 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.161262 B = 3206.185569 C = 3688.905465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.145 3.855 3 N -0.843 5.843 4 C -0.137 4.137 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.116 4.116 8 C -0.082 4.082 9 H 0.094 0.906 10 C 0.463 3.537 11 O -0.582 6.582 12 N -0.604 5.604 13 C -0.319 4.319 14 H 0.054 0.946 15 C -0.019 4.019 16 N -0.941 5.941 17 Si 0.959 3.041 18 H -0.256 1.256 19 H -0.275 1.275 20 H -0.236 1.236 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.065 0.935 24 H 0.343 0.657 25 H 0.337 0.663 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.383 0.617 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.630 -10.320 17.708 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.052 3.948 3 N -0.373 5.373 4 C -0.176 4.176 5 C -0.155 4.155 6 C -0.148 4.148 7 C -0.155 4.155 8 C -0.104 4.104 9 H 0.112 0.888 10 C 0.250 3.750 11 O -0.463 6.463 12 N -0.246 5.246 13 C -0.448 4.448 14 H 0.072 0.928 15 C -0.217 4.217 16 N -0.582 5.582 17 Si 0.780 3.220 18 H -0.181 1.181 19 H -0.200 1.200 20 H -0.160 1.160 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.156 0.844 25 H 0.150 0.850 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.218 0.782 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.713 -9.511 16.897 19.955 hybrid contribution 0.766 -0.422 -0.128 0.884 sum 5.479 -9.933 16.769 20.245 Atomic orbital electron populations 1.22068 0.95033 1.01495 1.02008 1.20405 0.94953 0.87295 0.92138 1.58631 1.15593 1.14568 1.48487 1.22336 1.01086 0.97046 0.97151 1.21563 1.01086 0.94605 0.98259 1.21531 1.01391 0.99183 0.92693 1.21657 1.01210 0.92519 1.00071 1.21287 1.01177 0.95989 0.91956 0.88782 1.20820 0.83482 0.86107 0.84542 1.90516 1.40870 1.28578 1.86359 1.42146 1.48852 1.28344 1.05305 1.19013 1.30114 1.10975 0.84711 0.92757 1.26041 0.99478 1.02251 0.93894 1.69811 1.47165 1.42564 0.98707 0.85437 0.78994 0.78056 0.79512 1.18087 1.20028 1.15976 0.92691 0.93246 0.91647 0.84371 0.84957 0.91173 0.91022 0.90022 0.91892 0.90092 0.90760 0.92172 0.91567 0.78218 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 7.75 71.98 0.56 -4.21 16 2 C 0.15 4.14 0.56 3.53 0.00 4.14 16 3 N -0.84 -25.72 7.67 -151.56 -1.16 -26.88 16 4 C -0.14 -2.67 5.02 30.59 0.15 -2.51 16 5 C -0.12 -2.00 5.65 30.59 0.17 -1.83 16 6 C -0.11 -2.01 5.92 30.60 0.18 -1.83 16 7 C -0.12 -3.09 4.82 30.60 0.15 -2.94 16 8 C -0.08 -2.64 1.96 -11.54 -0.02 -2.66 16 9 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 10 C 0.46 21.53 6.65 87.66 0.58 22.11 16 11 O -0.58 -32.32 12.45 -3.11 -0.04 -32.36 16 12 N -0.60 -29.79 4.98 -306.98 -1.53 -31.32 16 13 C -0.32 -19.31 10.16 84.04 0.85 -18.46 16 14 H 0.05 3.90 7.39 -2.91 -0.02 3.88 16 15 C -0.02 -1.10 5.50 84.93 0.47 -0.64 16 16 N -0.94 -58.51 13.96 21.66 0.30 -58.21 16 17 Si 0.96 40.57 27.74 68.60 1.90 42.48 16 18 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 19 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.24 -8.60 6.52 99.48 0.65 -7.95 16 21 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.05 2.11 5.51 -2.38 -0.01 2.10 16 23 H 0.06 1.87 4.81 -2.39 -0.01 1.85 16 24 H 0.34 8.86 9.00 -89.69 -0.81 8.05 16 25 H 0.34 9.18 8.98 -89.69 -0.81 8.37 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.15 6.43 -2.39 -0.02 1.14 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.75 6.43 -2.39 -0.02 1.73 16 33 H 0.07 1.74 7.56 -2.39 -0.02 1.72 16 34 H 0.38 16.14 5.18 -92.71 -0.48 15.66 16 35 H 0.28 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -75.34 268.12 1.54 -73.80 By element: Atomic # 1 Polarization: 42.36 SS G_CDS: -1.03 Total: 41.33 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 3.10 Total: -8.83 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -2.39 Total: -116.42 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.04 Total: -32.36 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.90 Total: 42.48 kcal Total: -75.34 1.54 -73.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885784133.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.827 kcal (2) G-P(sol) polarization free energy of solvation -75.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds