Wall clock time and date at job start Mon Mar 30 2020 03:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50698 * 109.47592 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99758 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00201 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99872 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47012 * 180.02562 * 7 6 4 9 9 H 1.08999 * 112.96187 * 306.67521 * 8 7 6 10 10 C 1.53952 * 113.76988 * 175.00415 * 8 7 6 11 11 C 1.53947 * 86.28684 * 222.08958 * 10 8 7 12 12 N 1.47574 * 86.11976 * 23.60634 * 11 10 8 13 13 C 1.36931 * 134.49503 * 155.36148 * 12 11 10 14 14 H 1.08003 * 120.00142 * 180.02562 * 13 12 11 15 15 C 1.38813 * 120.00199 * 359.97438 * 13 12 11 16 16 N 1.31618 * 119.99734 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00351 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47264 * 59.99900 * 17 15 13 19 19 H 1.48500 * 109.47073 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47190 * 299.99657 * 17 15 13 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 0.96992 * 120.00336 * 0.02562 * 6 4 3 29 29 H 1.09002 * 109.47391 * 300.00314 * 7 6 4 30 30 H 1.09001 * 109.47271 * 60.00533 * 7 6 4 31 31 H 1.09000 * 113.74007 * 336.43261 * 10 8 7 32 32 H 1.09000 * 113.74292 * 107.63470 * 10 8 7 33 33 H 1.08997 * 113.76490 * 137.91061 * 11 10 8 34 34 H 1.09000 * 113.76955 * 269.29895 * 11 10 8 35 35 H 0.96998 * 120.00174 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 5.6859 2.6096 0.0014 8 6 6.1959 4.0520 0.0013 9 1 5.7732 4.6525 -0.8042 10 6 7.7260 4.1692 0.1252 11 6 7.4578 5.3281 1.1024 12 7 6.1395 4.7031 1.3245 13 6 5.2294 4.7203 2.3474 14 1 4.3101 4.1599 2.2619 15 6 5.4887 5.4572 3.4949 16 7 6.6096 6.1390 3.5998 17 14 4.2475 5.4802 4.8907 18 1 4.0402 4.0976 5.3915 19 1 4.7581 6.3341 5.9931 20 1 2.9579 6.0266 4.3973 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 3.7360 3.4496 -0.0001 29 1 6.0486 2.0964 0.8921 30 1 6.0500 2.0951 -0.8879 31 1 8.1962 3.3029 0.5904 32 1 8.2188 4.4759 -0.7974 33 1 8.1019 5.3193 1.9816 34 1 7.4055 6.3050 0.6216 35 1 6.7910 6.6537 4.4017 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269189606.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:33 Heat of formation + Delta-G solvation = -2.301011 kcal Electronic energy + Delta-G solvation = -15783.365904 eV Core-core repulsion = 13203.582485 eV Total energy + Delta-G solvation = -2579.783418 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.40557 -37.91914 -34.40439 -33.91563 -32.18318 -28.89550 -27.89710 -26.69882 -23.36833 -22.49772 -21.39842 -20.01170 -19.05701 -17.08215 -16.30400 -15.77081 -15.59883 -15.05607 -14.26723 -14.03905 -13.73469 -13.37235 -13.00946 -12.91216 -12.16816 -11.74809 -11.67049 -11.40859 -11.17054 -11.09852 -11.00905 -10.73892 -10.71607 -10.56337 -10.01625 -9.77062 -9.61238 -9.26597 -8.80147 -8.53597 -6.89915 -5.76855 -3.09339 3.01675 3.37334 3.42025 3.43279 3.62459 4.42702 4.91690 4.96609 5.03159 5.15376 5.39428 5.47001 5.51960 5.62309 5.65746 5.70580 5.79751 5.92528 5.99176 6.11198 6.17318 6.32253 6.33518 6.41108 6.62608 6.73408 6.93615 7.24305 7.41260 7.58694 7.94905 7.98186 8.62510 9.03810 9.70616 10.59321 11.39871 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.022083 B = 0.008006 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.637906 B = 3496.638136 C = 4571.272147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.142 4.142 4 C 0.507 3.493 5 O -0.555 6.555 6 N -0.716 5.716 7 C 0.123 3.877 8 C 0.126 3.874 9 H 0.049 0.951 10 C -0.156 4.156 11 C 0.159 3.841 12 N -0.602 5.602 13 C -0.220 4.220 14 H 0.078 0.922 15 C -0.007 4.007 16 N -0.920 5.920 17 Si 0.908 3.092 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.286 1.286 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.402 0.598 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.026 0.974 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 -6.033 -8.454 12.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.182 4.182 4 C 0.294 3.706 5 O -0.434 6.434 6 N -0.366 5.366 7 C -0.002 4.002 8 C 0.018 3.982 9 H 0.066 0.934 10 C -0.195 4.195 11 C 0.034 3.966 12 N -0.329 5.329 13 C -0.348 4.348 14 H 0.096 0.904 15 C -0.204 4.204 16 N -0.567 5.567 17 Si 0.738 3.262 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.212 1.212 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.236 0.764 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.514 -6.668 -8.116 12.360 hybrid contribution -0.961 0.704 0.832 1.453 sum -7.476 -5.964 -7.284 12.021 Atomic orbital electron populations 1.21799 0.95779 1.01656 1.01737 1.21252 0.94922 0.95023 1.03394 1.21712 0.92466 0.99799 1.04249 1.20680 0.90129 0.83808 0.76025 1.90656 1.70675 1.31471 1.50580 1.46018 1.08100 1.08429 1.74073 1.21730 0.78885 0.98322 1.01255 1.22504 0.94406 0.91152 0.90124 0.93371 1.23773 0.94846 1.01337 0.99546 1.22198 0.87239 0.91926 0.95286 1.46058 1.20185 1.54817 1.11816 1.18899 0.98325 1.24692 0.92839 0.90438 1.24761 0.97721 0.99729 0.98187 1.69805 1.24122 1.34629 1.28163 0.86269 0.80423 0.77468 0.82021 1.21148 1.21561 1.21246 0.92819 0.92665 0.92635 0.91298 0.91455 0.89279 0.88950 0.76379 0.91113 0.92342 0.90532 0.92824 0.90828 0.95592 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.11 -1.29 5.22 -26.74 -0.14 -1.43 16 3 C -0.14 -1.77 5.70 -27.89 -0.16 -1.93 16 4 C 0.51 8.51 7.83 -10.99 -0.09 8.43 16 5 O -0.55 -11.24 15.98 5.55 0.09 -11.15 16 6 N -0.72 -12.13 5.53 -60.29 -0.33 -12.46 16 7 C 0.12 2.26 5.54 -4.04 -0.02 2.24 16 8 C 0.13 2.43 4.33 -66.86 -0.29 2.14 16 9 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 10 C -0.16 -2.87 7.86 -25.80 -0.20 -3.08 16 11 C 0.16 3.66 7.51 -2.98 -0.02 3.63 16 12 N -0.60 -14.73 3.57 -170.75 -0.61 -15.34 16 13 C -0.22 -5.92 10.51 -15.06 -0.16 -6.07 16 14 H 0.08 1.99 7.80 -52.48 -0.41 1.58 16 15 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 16 N -0.92 -27.02 11.38 55.49 0.63 -26.39 16 17 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 25 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.40 6.34 8.47 -40.82 -0.35 6.00 16 29 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.89 7.15 -51.93 -0.37 1.52 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 294.71 15.07 4.44 4.44 Total: -1.00 -31.59 294.71 -7.36 -38.95 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.75 Total: 2.41 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.81 Total: 2.57 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.31 Total: -54.19 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.59 -7.36 -38.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269189606.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.652 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds