Wall clock time and date at job start Mon Mar 30 2020 03:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50698 * 109.47592 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99758 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00201 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99872 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47012 * 180.02562 * 7 6 4 9 9 H 1.08999 * 112.96187 * 306.67521 * 8 7 6 10 10 C 1.53952 * 113.76988 * 175.00415 * 8 7 6 11 11 C 1.53947 * 86.28684 * 222.08958 * 10 8 7 12 12 N 1.47574 * 86.11976 * 23.60634 * 11 10 8 13 13 C 1.36931 * 134.49503 * 155.36148 * 12 11 10 14 14 H 1.08003 * 120.00142 * 180.02562 * 13 12 11 15 15 C 1.38813 * 120.00199 * 359.97438 * 13 12 11 16 16 N 1.31618 * 119.99734 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00351 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47264 * 59.99900 * 17 15 13 19 19 H 1.48500 * 109.47073 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47190 * 299.99657 * 17 15 13 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 0.96992 * 120.00336 * 0.02562 * 6 4 3 29 29 H 1.09002 * 109.47391 * 300.00314 * 7 6 4 30 30 H 1.09001 * 109.47271 * 60.00533 * 7 6 4 31 31 H 1.09000 * 113.74007 * 336.43261 * 10 8 7 32 32 H 1.09000 * 113.74292 * 107.63470 * 10 8 7 33 33 H 1.08997 * 113.76490 * 137.91061 * 11 10 8 34 34 H 1.09000 * 113.76955 * 269.29895 * 11 10 8 35 35 H 0.96998 * 120.00174 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 5.6859 2.6096 0.0014 8 6 6.1959 4.0520 0.0013 9 1 5.7732 4.6525 -0.8042 10 6 7.7260 4.1692 0.1252 11 6 7.4578 5.3281 1.1024 12 7 6.1395 4.7031 1.3245 13 6 5.2294 4.7203 2.3474 14 1 4.3101 4.1599 2.2619 15 6 5.4887 5.4572 3.4949 16 7 6.6096 6.1390 3.5998 17 14 4.2475 5.4802 4.8907 18 1 4.0402 4.0976 5.3915 19 1 4.7581 6.3341 5.9931 20 1 2.9579 6.0266 4.3973 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 3.7360 3.4496 -0.0001 29 1 6.0486 2.0964 0.8921 30 1 6.0500 2.0951 -0.8879 31 1 8.1962 3.3029 0.5904 32 1 8.2188 4.4759 -0.7974 33 1 8.1019 5.3193 1.9816 34 1 7.4055 6.3050 0.6216 35 1 6.7910 6.6537 4.4017 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269189606.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:33 Heat of formation + Delta-G solvation = -23.658161 kcal Electronic energy + Delta-G solvation = -15784.292019 eV Core-core repulsion = 13203.582485 eV Total energy + Delta-G solvation = -2580.709534 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.80278 -39.57315 -35.57996 -35.19455 -34.18907 -30.22350 -29.77074 -27.93331 -25.28633 -23.93819 -22.55216 -21.36299 -20.73348 -18.75933 -17.80184 -17.16119 -17.01651 -16.68533 -15.88082 -15.46355 -15.33812 -14.75915 -14.55144 -13.94284 -13.62506 -13.30208 -12.91594 -12.84391 -12.67874 -12.65001 -12.58026 -12.31690 -12.02942 -11.83680 -11.62148 -11.53303 -11.36016 -10.82684 -10.72396 -9.98391 -8.87757 -7.85737 -5.17552 1.44290 1.47256 1.52527 1.70395 2.31503 2.49415 3.33980 3.39745 3.82924 3.98175 4.05965 4.12809 4.16637 4.35779 4.56861 4.64575 4.72118 4.72369 4.76210 4.87689 4.95127 5.05914 5.10946 5.22691 5.28778 5.34398 5.44977 5.52233 5.62316 5.75704 5.99140 6.62835 6.96319 7.30904 7.66589 8.61491 9.31047 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.022083 B = 0.008006 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.637906 B = 3496.638136 C = 4571.272147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.135 4.135 4 C 0.502 3.498 5 O -0.595 6.595 6 N -0.715 5.715 7 C 0.132 3.868 8 C 0.133 3.867 9 H 0.073 0.927 10 C -0.132 4.132 11 C 0.150 3.850 12 N -0.630 5.630 13 C -0.215 4.215 14 H 0.086 0.914 15 C -0.072 4.072 16 N -0.955 5.955 17 Si 0.968 3.032 18 H -0.284 1.284 19 H -0.299 1.299 20 H -0.272 1.272 21 H 0.068 0.932 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.120 0.880 27 H 0.104 0.896 28 H 0.409 0.591 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.037 0.963 34 H 0.023 0.977 35 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.545 -6.367 -9.942 14.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.174 4.174 4 C 0.290 3.710 5 O -0.476 6.476 6 N -0.365 5.365 7 C 0.006 3.994 8 C 0.027 3.973 9 H 0.090 0.910 10 C -0.171 4.171 11 C 0.024 3.976 12 N -0.356 5.356 13 C -0.344 4.344 14 H 0.104 0.896 15 C -0.265 4.265 16 N -0.605 5.605 17 Si 0.797 3.203 18 H -0.211 1.211 19 H -0.225 1.225 20 H -0.198 1.198 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.138 0.862 27 H 0.122 0.878 28 H 0.245 0.755 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.235 -7.009 -9.643 14.489 hybrid contribution -0.407 0.765 1.219 1.496 sum -8.643 -6.244 -8.423 13.588 Atomic orbital electron populations 1.21754 0.93420 1.02494 1.02684 1.21243 0.96886 0.94448 1.01987 1.21772 0.88885 1.00564 1.06190 1.21482 0.91921 0.82908 0.74666 1.90639 1.71877 1.32791 1.52309 1.46028 1.07522 1.09045 1.73924 1.21495 0.80040 0.97335 1.00499 1.22669 0.95173 0.91283 0.88177 0.90991 1.23571 0.94716 0.98988 0.99785 1.22168 0.86602 0.93556 0.95253 1.46409 1.20271 1.55453 1.13481 1.19297 0.98585 1.23097 0.93400 0.89607 1.25540 0.99566 1.00601 1.00779 1.69997 1.25995 1.36162 1.28359 0.85298 0.78825 0.77073 0.79069 1.21066 1.22527 1.19800 0.91339 0.92188 0.91965 0.93421 0.92304 0.86213 0.87814 0.75525 0.94488 0.90482 0.90601 0.88731 0.94404 0.95907 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.61 16 2 C -0.11 -2.39 5.22 30.59 0.16 -2.23 16 3 C -0.13 -2.99 5.70 29.84 0.17 -2.82 16 4 C 0.50 16.05 7.83 87.66 0.69 16.74 16 5 O -0.59 -23.78 15.98 -3.05 -0.05 -23.83 16 6 N -0.71 -22.81 5.53 -463.06 -2.56 -25.37 16 7 C 0.13 4.63 5.54 86.38 0.48 5.11 16 8 C 0.13 4.85 4.33 45.09 0.20 5.05 16 9 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 10 C -0.13 -4.58 7.86 31.26 0.25 -4.34 16 11 C 0.15 6.89 7.51 86.48 0.65 7.54 16 12 N -0.63 -30.42 3.57 -694.12 -2.48 -32.90 16 13 C -0.22 -11.50 10.51 84.03 0.88 -10.62 16 14 H 0.09 4.31 7.80 -2.91 -0.02 4.29 16 15 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 16 N -0.96 -57.52 11.38 21.65 0.25 -57.28 16 17 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 23 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 24 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 25 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 26 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.41 11.87 8.47 -92.71 -0.79 11.08 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 32 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.04 2.00 7.15 -2.39 -0.02 1.98 16 34 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -69.21 294.71 2.11 -67.10 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.27 Total: 15.55 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 4.65 Total: 9.20 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -4.79 Total: -115.55 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.05 Total: -23.83 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -69.21 2.11 -67.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269189606.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.442 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds