Wall clock time and date at job start Mon Mar 30 2020 02:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 N 1.46906 * 109.46907 * 179.97438 * 16 14 13 18 18 C 1.46900 * 110.99458 * 180.02562 * 17 16 14 19 19 C 1.53008 * 117.49648 * 223.74408 * 18 17 16 20 20 C 1.53006 * 117.49441 * 155.08790 * 18 17 16 21 21 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 22 22 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 24 24 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 25 25 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 26 26 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 27 27 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 28 28 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 29 29 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 30 30 H 1.00897 * 110.99764 * 303.95861 * 17 16 14 31 31 H 1.08996 * 115.55438 * 9.42228 * 18 17 16 32 32 H 1.09000 * 117.49865 * 0.02562 * 19 18 17 33 33 H 1.09000 * 117.49493 * 145.02224 * 19 18 17 34 34 H 1.08999 * 117.50022 * 214.97869 * 20 18 17 35 35 H 1.09008 * 117.49798 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 7 -1.2961 3.8613 -2.5762 18 6 -1.7047 4.5215 -3.8233 19 6 -2.4281 5.8648 -3.7073 20 6 -3.2037 4.6103 -4.1172 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 5.8116 0.4042 0.4384 27 1 2.2954 2.1150 -1.9977 28 1 0.7620 4.1421 -2.8933 29 1 0.1091 2.6000 -3.4965 30 1 -1.9489 3.1356 -2.3208 31 1 -1.0332 4.3830 -4.6705 32 1 -2.6003 6.2589 -2.7058 33 1 -2.2325 6.6099 -4.4785 34 1 -3.5181 4.5307 -5.1578 35 1 -3.8865 4.1785 -3.3854 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054180289.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:17 Heat of formation + Delta-G solvation = -17.557999 kcal Electronic energy + Delta-G solvation = -15766.036243 eV Core-core repulsion = 13185.591232 eV Total energy + Delta-G solvation = -2580.445011 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.27451 -37.65993 -35.25065 -33.14998 -32.41773 -31.34356 -27.58992 -25.67454 -22.50795 -22.35146 -21.21366 -20.50806 -19.47166 -17.80997 -16.49679 -16.14340 -15.63662 -15.31222 -14.42722 -13.89549 -13.70510 -13.31139 -12.85679 -12.58899 -12.45443 -12.21635 -11.95675 -11.61610 -11.51040 -10.85745 -10.80287 -10.69361 -10.51975 -10.41634 -9.84744 -9.78475 -9.20215 -9.08704 -8.32203 -8.24499 -8.04330 -6.60638 -4.19485 3.28422 3.42377 3.47557 3.61362 3.66603 3.69804 4.35514 4.45417 4.78638 4.85779 5.06009 5.08781 5.25951 5.42404 5.49828 5.52882 5.58450 5.82803 6.06266 6.07438 6.09600 6.28355 6.69849 6.79242 6.92078 6.98240 7.06075 7.30010 7.38515 7.46168 7.70483 8.25270 8.52212 8.72440 9.02954 9.45258 10.77155 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.046935 B = 0.005839 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.431923 B = 4793.890919 C = 4914.799074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.251 3.749 4 H 0.040 0.960 5 C -0.629 4.629 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.887 5.887 9 Si 1.030 2.970 10 H -0.283 1.283 11 H -0.280 1.280 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.500 3.500 15 O -0.539 6.539 16 C 0.041 3.959 17 N -0.641 5.641 18 C 0.016 3.984 19 C -0.170 4.170 20 C -0.195 4.195 21 H 0.047 0.953 22 H 0.029 0.971 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.271 0.729 27 H 0.391 0.609 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.352 0.648 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.903 4.743 -10.516 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.148 3.852 4 H 0.058 0.942 5 C -0.666 4.666 6 H 0.080 0.920 7 C -0.159 4.159 8 N -0.518 5.518 9 Si 0.857 3.143 10 H -0.209 1.209 11 H -0.206 1.206 12 H -0.200 1.200 13 N -0.352 5.352 14 C 0.284 3.716 15 O -0.416 6.416 16 C -0.091 4.091 17 N -0.274 5.274 18 C -0.095 4.095 19 C -0.208 4.208 20 C -0.233 4.233 21 H 0.066 0.934 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.224 0.776 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.173 0.827 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.085 4.975 -7.885 15.263 hybrid contribution 0.146 -0.418 -2.689 2.726 sum -11.939 4.556 -10.574 16.586 Atomic orbital electron populations 1.21885 0.97463 0.98751 1.01905 1.22230 0.93634 0.99831 1.01315 1.18986 0.95712 0.88376 0.82155 0.94195 1.21987 0.89783 1.50013 1.04841 0.91984 1.25608 0.96593 0.91644 1.02094 1.70873 1.13925 1.36511 1.30530 0.84219 0.76007 0.77679 0.76421 1.20875 1.20640 1.19952 1.46242 1.14565 1.56267 1.18155 1.20306 0.82904 0.79214 0.89192 1.90665 1.50756 1.59162 1.41056 1.21891 0.92049 0.99226 0.95981 1.59843 1.02690 1.35179 1.29654 1.22380 0.94078 1.00476 0.92549 1.23145 1.03570 0.91089 1.02984 1.23265 0.94399 1.03467 1.02157 0.93445 0.95182 0.92961 0.93268 0.91899 0.91906 0.77594 0.88402 0.92729 0.82683 0.88282 0.88179 0.88970 0.88847 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.53 37.16 0.32 -2.58 16 2 C -0.13 -2.94 5.37 -26.73 -0.14 -3.09 16 3 C 0.25 6.00 1.84 -69.09 -0.13 5.88 16 4 H 0.04 1.05 6.12 -51.93 -0.32 0.73 16 5 C -0.63 -16.95 8.92 -34.44 -0.31 -17.25 16 6 H 0.06 1.74 7.96 -52.49 -0.42 1.32 16 7 C 0.05 1.37 5.15 -17.82 -0.09 1.28 16 8 N -0.89 -26.16 13.70 55.43 0.76 -25.40 16 9 Si 1.03 25.16 26.56 -169.99 -4.51 20.64 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.36 6.34 56.52 0.36 -6.00 16 13 N -0.70 -13.99 5.03 -54.93 -0.28 -14.27 16 14 C 0.50 9.32 6.47 -10.98 -0.07 9.25 16 15 O -0.54 -11.82 13.35 5.55 0.07 -11.75 16 16 C 0.04 0.57 6.02 -4.97 -0.03 0.54 16 17 N -0.64 -8.79 6.37 -107.98 -0.69 -9.48 16 18 C 0.02 0.17 6.25 -67.71 -0.42 -0.25 16 19 C -0.17 -1.69 10.46 -26.69 -0.28 -1.97 16 20 C -0.19 -1.80 10.34 -26.69 -0.28 -2.07 16 21 H 0.05 0.94 5.63 -51.93 -0.29 0.64 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 1.12 7.89 -51.93 -0.41 0.71 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.06 1.48 5.77 -51.93 -0.30 1.18 16 26 H 0.27 7.88 8.73 -40.82 -0.36 7.53 16 27 H 0.39 6.90 8.53 -40.82 -0.35 6.55 16 28 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.35 4.92 8.39 -39.29 -0.33 4.59 16 31 H 0.10 0.95 7.90 -51.93 -0.41 0.54 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 LS Contribution 286.95 15.07 4.32 4.32 Total: -1.00 -30.42 286.95 -7.15 -37.58 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.40 Total: 8.63 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -1.43 Total: -10.27 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.21 Total: -49.15 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.07 Total: -11.75 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -4.51 Total: 20.64 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.42 -7.15 -37.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054180289.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.020 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds