Wall clock time and date at job start Mon Mar 30 2020 02:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47057 * 2 1 4 4 H 1.09000 * 109.47066 * 305.76817 * 3 2 1 5 5 C 1.50705 * 109.46979 * 185.77189 * 3 2 1 6 6 H 1.07999 * 119.99990 * 335.21160 * 5 3 2 7 7 C 1.37878 * 119.99838 * 155.21518 * 5 3 2 8 8 N 1.31521 * 119.99845 * 355.33650 * 7 5 3 9 9 Si 1.86797 * 119.99798 * 175.33776 * 7 5 3 10 10 H 1.48504 * 109.47118 * 90.00160 * 9 7 5 11 11 H 1.48498 * 109.47243 * 329.99803 * 9 7 5 12 12 H 1.48501 * 109.47143 * 209.99859 * 9 7 5 13 13 N 1.46498 * 109.47399 * 65.77205 * 3 2 1 14 14 C 1.34784 * 119.99827 * 274.99953 * 13 3 2 15 15 O 1.21282 * 119.99883 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99985 * 179.97438 * 14 13 3 17 17 H 1.09001 * 110.62629 * 59.30300 * 16 14 13 18 18 C 1.55137 * 110.70752 * 182.40411 * 16 14 13 19 19 C 1.55108 * 101.56032 * 153.90763 * 18 16 14 20 20 N 1.47843 * 104.90852 * 323.16236 * 19 18 16 21 21 C 1.47441 * 108.56469 * 23.96815 * 20 19 18 22 22 H 1.08992 * 109.47318 * 300.00288 * 1 2 3 23 23 H 1.09003 * 109.46576 * 60.00506 * 1 2 3 24 24 H 1.09002 * 109.46899 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47473 * 239.99185 * 2 1 3 26 26 H 1.09003 * 109.46576 * 119.99494 * 2 1 3 27 27 H 0.96996 * 119.99946 * 5.27454 * 8 7 5 28 28 H 0.96993 * 120.00293 * 94.99744 * 13 3 2 29 29 H 1.08998 * 110.99166 * 272.13628 * 18 16 14 30 30 H 1.09006 * 110.99028 * 35.94738 * 18 16 14 31 31 H 1.09000 * 110.42835 * 204.23905 * 19 18 16 32 32 H 1.09001 * 110.21878 * 81.97072 * 19 18 16 33 33 H 1.00903 * 111.00211 * 261.70498 * 20 19 18 34 34 H 1.09003 * 109.89143 * 239.60640 * 21 20 19 35 35 H 1.09003 * 110.02263 * 118.49701 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5948 1.9852 -0.8338 5 6 3.5403 1.4449 -0.1429 6 1 4.1136 0.5839 0.1676 7 6 4.1808 2.5462 -0.6700 8 7 3.4778 3.5569 -1.1325 9 14 6.0470 2.6027 -0.7270 10 1 6.5208 2.0232 -2.0097 11 1 6.6009 1.8178 0.4054 12 1 6.5030 4.0121 -0.6223 13 7 1.6684 2.0919 1.2595 14 6 0.4526 2.6583 1.3926 15 8 -0.3339 2.6299 0.4698 16 6 0.0701 3.3258 2.6884 17 1 0.7605 4.1366 2.9211 18 6 -1.3891 3.8487 2.6263 19 6 -1.7863 3.8407 4.1256 20 7 -1.1306 2.6402 4.6864 21 6 0.0270 2.2987 3.8394 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5138 0.8901 27 1 2.5129 3.5620 -1.0338 28 1 2.2973 2.1142 1.9976 29 1 -1.4251 4.8576 2.2152 30 1 -2.0223 3.1721 2.0522 31 1 -2.8686 3.7666 4.2321 32 1 -1.4165 4.7400 4.6181 33 1 -1.7775 1.8679 4.7430 34 1 -0.0929 1.2936 3.4351 35 1 0.9461 2.3564 4.4225 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062116909.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:01 Heat of formation + Delta-G solvation = -79.693181 kcal Electronic energy + Delta-G solvation = -16413.487487 eV Core-core repulsion = 13830.348093 eV Total energy + Delta-G solvation = -2583.139395 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.14197 -38.77669 -36.94887 -34.25947 -33.30763 -31.20928 -30.02386 -28.39950 -25.13871 -23.66013 -22.47578 -21.80447 -20.74908 -19.32445 -18.19274 -17.26245 -16.85973 -16.31549 -15.81592 -15.62233 -15.02323 -14.79759 -14.56637 -14.20672 -14.09029 -13.66452 -12.90216 -12.72865 -12.63462 -12.60278 -12.43521 -12.29757 -12.10678 -11.91828 -11.84263 -11.66041 -11.08901 -10.61827 -10.53407 -9.60776 -9.50094 -8.71108 -6.52196 1.55234 1.61160 1.80314 1.82294 2.48048 2.56366 3.15941 3.33493 3.50242 3.80232 4.00723 4.23016 4.23785 4.29676 4.33681 4.46253 4.52636 4.61326 4.83572 4.88366 4.90849 5.01195 5.03481 5.14764 5.21767 5.26809 5.45296 5.73183 5.75700 5.99547 6.11856 6.39080 6.44973 7.00108 7.36973 7.53936 8.64305 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.031946 B = 0.007862 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.274091 B = 3560.505403 C = 3897.124453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.112 4.112 3 C 0.243 3.757 4 H 0.005 0.995 5 C -0.614 4.614 6 H 0.062 0.938 7 C -0.018 4.018 8 N -0.923 5.923 9 Si 1.121 2.879 10 H -0.277 1.277 11 H -0.261 1.261 12 H -0.288 1.288 13 N -0.700 5.700 14 C 0.501 3.499 15 O -0.593 6.593 16 C -0.132 4.132 17 H 0.105 0.895 18 C -0.131 4.131 19 C 0.055 3.945 20 N -0.681 5.681 21 C 0.069 3.931 22 H 0.044 0.956 23 H 0.027 0.973 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.257 0.743 28 H 0.396 0.604 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.347 0.653 34 H 0.050 0.950 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 -2.306 11.251 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.151 4.151 3 C 0.142 3.858 4 H 0.023 0.977 5 C -0.652 4.652 6 H 0.080 0.920 7 C -0.220 4.220 8 N -0.558 5.558 9 Si 0.942 3.058 10 H -0.202 1.202 11 H -0.186 1.186 12 H -0.213 1.213 13 N -0.348 5.348 14 C 0.288 3.712 15 O -0.476 6.476 16 C -0.154 4.154 17 H 0.123 0.877 18 C -0.170 4.170 19 C -0.074 4.074 20 N -0.310 5.310 21 C -0.061 4.061 22 H 0.063 0.937 23 H 0.046 0.954 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.230 0.770 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.164 0.836 34 H 0.068 0.932 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.607 -1.121 10.582 11.596 hybrid contribution -1.518 -1.020 -0.535 1.906 sum -6.125 -2.141 10.047 11.960 Atomic orbital electron populations 1.21700 0.96014 1.00041 1.00781 1.21737 0.95070 0.97298 1.00989 1.18654 0.94271 0.89794 0.83099 0.97687 1.22413 0.92015 1.04065 1.46755 0.92008 1.27453 1.11163 0.92075 0.91275 1.70873 1.08535 1.34053 1.42351 0.82899 0.68830 0.76283 0.77805 1.20244 1.18555 1.21346 1.47172 1.14516 1.55635 1.17511 1.21000 0.82152 0.78387 0.89663 1.90604 1.52069 1.61669 1.43236 1.22634 1.00063 0.99820 0.92922 0.87690 1.23003 0.93432 1.01749 0.98848 1.22966 0.99509 0.94496 0.90475 1.61797 1.10596 1.08376 1.50218 1.22478 0.96470 0.96201 0.90994 0.93724 0.95356 0.92181 0.92762 0.92021 0.93282 0.76993 0.90649 0.92036 0.89162 0.89543 0.83638 0.93161 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 8.53 71.98 0.61 -4.51 16 2 C -0.11 -4.81 5.58 30.59 0.17 -4.64 16 3 C 0.24 12.16 1.95 44.25 0.09 12.24 16 4 H 0.01 0.31 6.12 -2.39 -0.01 0.29 16 5 C -0.61 -32.33 8.50 25.60 0.22 -32.11 16 6 H 0.06 3.14 7.81 -2.91 -0.02 3.11 16 7 C -0.02 -0.99 5.45 84.65 0.46 -0.53 16 8 N -0.92 -55.63 13.63 21.45 0.29 -55.33 16 9 Si 1.12 47.42 29.91 68.60 2.05 49.47 16 10 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 12 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 13 N -0.70 -30.18 5.00 -446.09 -2.23 -32.42 16 14 C 0.50 20.72 5.61 87.65 0.49 21.21 16 15 O -0.59 -28.86 12.87 -3.04 -0.04 -28.90 16 16 C -0.13 -4.08 3.32 -10.36 -0.03 -4.12 16 17 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 18 C -0.13 -3.64 6.17 32.05 0.20 -3.45 16 19 C 0.05 1.13 7.57 86.84 0.66 1.78 16 20 N -0.68 -14.84 7.39 -504.06 -3.73 -18.57 16 21 C 0.07 1.74 7.15 86.65 0.62 2.36 16 22 H 0.04 1.81 5.63 -2.39 -0.01 1.79 16 23 H 0.03 1.23 7.89 -2.39 -0.02 1.21 16 24 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.26 16.27 6.66 -92.71 -0.62 15.66 16 28 H 0.40 15.53 8.59 -92.71 -0.80 14.73 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 1.95 7.44 -2.38 -0.02 1.93 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.35 6.53 8.91 -89.69 -0.80 5.73 16 34 H 0.05 1.35 7.81 -2.39 -0.02 1.33 16 35 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -65.39 281.98 -0.53 -65.92 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -0.35 Total: 31.58 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 3.48 Total: -11.75 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -5.67 Total: -106.32 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.04 Total: -28.90 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.05 Total: 49.47 kcal Total: -65.39 -0.53 -65.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062116909.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.777 kcal (2) G-P(sol) polarization free energy of solvation -65.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds