Wall clock time and date at job start Mon Mar 30 2020 03:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47670 * 2 1 4 4 C 1.53008 * 109.47054 * 240.00250 * 2 1 3 5 5 C 1.53002 * 109.46880 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47599 * 59.99776 * 5 4 2 7 7 C 1.53005 * 109.46834 * 300.00031 * 6 5 4 8 8 N 1.46896 * 109.47362 * 299.99753 * 7 6 5 9 9 C 1.50706 * 109.46964 * 179.97438 * 7 6 5 10 10 O 1.21288 * 120.00284 * 265.00596 * 9 7 6 11 11 N 1.34777 * 119.99730 * 84.99768 * 9 7 6 12 12 C 1.37095 * 119.99910 * 179.97438 * 11 9 7 13 13 H 1.08005 * 119.99959 * 0.02562 * 12 11 9 14 14 C 1.38950 * 120.00053 * 180.02562 * 12 11 9 15 15 N 1.31413 * 119.99930 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99918 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 269.99889 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00409 * 16 14 12 19 19 H 1.48498 * 109.47011 * 150.00030 * 16 14 12 20 20 C 1.52996 * 109.47245 * 120.00137 * 2 1 3 21 21 H 1.08996 * 109.47182 * 299.99851 * 1 2 3 22 22 H 1.09002 * 109.47121 * 59.99898 * 1 2 3 23 23 H 1.08997 * 109.47013 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47042 * 299.99475 * 4 2 1 25 25 H 1.08992 * 109.47331 * 60.00495 * 4 2 1 26 26 H 1.08999 * 109.46767 * 180.02562 * 5 4 2 27 27 H 1.09008 * 109.46926 * 299.99402 * 5 4 2 28 28 H 1.08994 * 109.47164 * 180.02562 * 6 5 4 29 29 H 1.08992 * 109.47048 * 59.99719 * 6 5 4 30 30 H 1.00901 * 110.99870 * 300.00455 * 8 7 6 31 31 H 1.00901 * 110.99961 * 63.95545 * 8 7 6 32 32 H 0.96996 * 119.99887 * 0.02562 * 11 9 7 33 33 H 0.97001 * 119.99781 * 359.97438 * 15 14 12 34 34 H 1.09005 * 109.46794 * 59.99844 * 20 2 1 35 35 H 1.08996 * 109.47040 * 300.00099 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0796 -1.4434 0.0002 7 6 3.5695 -0.7221 1.2495 8 7 4.0596 0.6627 1.2498 9 6 4.0709 -1.4332 2.4800 10 8 3.3749 -2.2619 3.0274 11 7 5.2929 -1.1483 2.9719 12 6 5.7489 -1.7948 4.0916 13 1 5.1290 -2.5327 4.5792 14 6 7.0085 -1.5007 4.5992 15 7 7.7625 -0.6026 4.0062 16 14 7.6300 -2.3822 6.1244 17 1 7.2367 -1.6156 7.3339 18 1 7.0375 -3.7424 6.1860 19 1 9.1100 -2.4892 6.0657 20 6 2.0400 -0.7213 1.2492 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.6767 -1.7489 -1.2493 25 1 1.6768 -0.2074 -2.1393 26 1 3.9333 -1.2352 -2.1392 27 1 3.9337 0.3059 -1.2488 28 1 5.1695 -1.4433 0.0006 29 1 3.7159 -2.4708 0.0000 30 1 5.0683 0.6893 1.2500 31 1 3.6844 1.1793 0.4684 32 1 5.8495 -0.4854 2.5343 33 1 7.4399 -0.1452 3.2140 34 1 1.6766 -1.7489 1.2491 35 1 1.6767 -0.2075 2.1391 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070904552.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:47 Heat of formation + Delta-G solvation = -62.175983 kcal Electronic energy + Delta-G solvation = -16473.138632 eV Core-core repulsion = 13890.758840 eV Total energy + Delta-G solvation = -2582.379792 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.90771 -37.38632 -34.30148 -33.61550 -31.67417 -30.80179 -28.36148 -26.36094 -24.90869 -22.73758 -21.55327 -19.76277 -18.50751 -17.97107 -16.55596 -15.54339 -15.12905 -14.56728 -14.35477 -14.00309 -13.74707 -13.58578 -13.36251 -12.64609 -12.39805 -12.18501 -11.78992 -11.55944 -11.40148 -11.11366 -10.93081 -10.92492 -10.35519 -10.27268 -10.19785 -10.02411 -9.83484 -9.51108 -8.64213 -8.15424 -7.98722 -6.72556 -3.84477 3.33037 3.36918 3.56404 3.83976 4.27034 4.64000 4.76470 4.84814 4.86566 5.07024 5.19950 5.26346 5.37239 5.51715 5.58237 5.65368 5.70482 5.76321 5.90953 5.93559 6.00693 6.08778 6.19782 6.29689 6.31366 6.45997 6.56672 6.70474 7.37478 7.64613 7.85009 8.11827 8.64367 8.83657 9.52564 9.92675 10.70889 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.050536 B = 0.006860 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.930979 B = 4080.833392 C = 4288.529364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.144 4.144 7 C 0.115 3.885 8 N -0.832 5.832 9 C 0.460 3.540 10 O -0.590 6.590 11 N -0.564 5.564 12 C -0.383 4.383 13 H 0.098 0.902 14 C -0.009 4.009 15 N -0.900 5.900 16 Si 1.094 2.906 17 H -0.284 1.284 18 H -0.284 1.284 19 H -0.281 1.281 20 C -0.082 4.082 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.338 0.662 31 H 0.338 0.662 32 H 0.375 0.625 33 H 0.261 0.739 34 H 0.073 0.927 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.780 2.640 -10.781 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.184 4.184 7 C 0.019 3.981 8 N -0.366 5.366 9 C 0.245 3.755 10 O -0.475 6.475 11 N -0.200 5.200 12 C -0.512 4.512 13 H 0.116 0.884 14 C -0.212 4.212 15 N -0.539 5.539 16 Si 0.920 3.080 17 H -0.211 1.211 18 H -0.210 1.210 19 H -0.207 1.207 20 C -0.120 4.120 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.208 0.792 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.305 2.010 -8.624 11.479 hybrid contribution -0.479 0.316 -2.271 2.342 sum -7.784 2.326 -10.894 13.590 Atomic orbital electron populations 1.21790 0.95270 1.01752 1.01339 1.21192 0.95518 0.99660 0.94991 0.91097 1.21629 0.95213 1.00950 0.97440 1.21540 0.95984 1.00380 0.97704 1.22260 1.00629 1.00896 0.94584 1.20870 0.96232 0.87727 0.93307 1.58991 1.13603 1.12733 1.51252 1.19516 0.82962 0.86236 0.86768 1.90511 1.57300 1.37536 1.62108 1.41915 1.14831 1.36878 1.26419 1.20603 1.03161 1.22358 1.05090 0.88366 1.26505 0.92545 0.97904 1.04232 1.70870 1.38476 1.24308 1.20284 0.83091 0.76083 0.75312 0.73518 1.21089 1.20978 1.20675 1.21332 0.92172 1.01339 0.97170 0.92587 0.93056 0.92726 0.91844 0.92240 0.91871 0.92304 0.91905 0.90964 0.84872 0.84671 0.79155 0.92790 0.90823 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.19 37.16 0.34 -1.25 16 2 C -0.09 -1.19 2.46 -90.62 -0.22 -1.42 16 3 H 0.07 0.86 6.57 -51.93 -0.34 0.52 16 4 C -0.11 -1.31 5.20 -26.73 -0.14 -1.45 16 5 C -0.12 -1.42 5.66 -26.73 -0.15 -1.58 16 6 C -0.14 -2.27 4.87 -26.73 -0.13 -2.40 16 7 C 0.11 2.09 0.88 -132.77 -0.12 1.97 16 8 N -0.83 -13.44 8.61 -0.21 0.00 -13.44 16 9 C 0.46 11.32 6.66 -10.98 -0.07 11.25 16 10 O -0.59 -16.74 15.67 5.55 0.09 -16.66 16 11 N -0.56 -14.62 5.18 -10.96 -0.06 -14.67 16 12 C -0.38 -11.05 9.68 -14.93 -0.14 -11.19 16 13 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 14 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 15 N -0.90 -25.55 13.68 55.50 0.76 -24.79 16 16 Si 1.09 24.76 29.92 -169.99 -5.09 19.68 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 C -0.08 -1.38 3.73 -26.76 -0.10 -1.48 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.65 6.76 -51.92 -0.35 0.30 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.34 5.42 7.44 -39.29 -0.29 5.13 16 31 H 0.34 4.48 5.44 -39.29 -0.21 4.27 16 32 H 0.37 8.99 5.11 -40.82 -0.21 8.78 16 33 H 0.26 7.13 6.78 -40.82 -0.28 6.85 16 34 H 0.07 1.33 7.87 -51.93 -0.41 0.92 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 274.63 15.07 4.14 4.14 Total: -1.00 -32.23 274.63 -6.06 -38.29 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -5.07 Total: 15.35 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -0.83 Total: -7.90 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.70 Total: -52.90 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.09 Total: -16.66 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.09 Total: 19.68 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.23 -6.06 -38.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070904552.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.884 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds