Wall clock time and date at job start Mon Mar 30 2020 03:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47670 * 2 1 4 4 C 1.53008 * 109.47054 * 240.00250 * 2 1 3 5 5 C 1.53002 * 109.46880 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47599 * 59.99776 * 5 4 2 7 7 C 1.53005 * 109.46834 * 300.00031 * 6 5 4 8 8 N 1.46896 * 109.47362 * 299.99753 * 7 6 5 9 9 C 1.50706 * 109.46964 * 179.97438 * 7 6 5 10 10 O 1.21288 * 120.00284 * 265.00596 * 9 7 6 11 11 N 1.34777 * 119.99730 * 84.99768 * 9 7 6 12 12 C 1.37095 * 119.99910 * 179.97438 * 11 9 7 13 13 H 1.08005 * 119.99959 * 0.02562 * 12 11 9 14 14 C 1.38950 * 120.00053 * 180.02562 * 12 11 9 15 15 N 1.31413 * 119.99930 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99918 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 269.99889 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00409 * 16 14 12 19 19 H 1.48498 * 109.47011 * 150.00030 * 16 14 12 20 20 C 1.52996 * 109.47245 * 120.00137 * 2 1 3 21 21 H 1.08996 * 109.47182 * 299.99851 * 1 2 3 22 22 H 1.09002 * 109.47121 * 59.99898 * 1 2 3 23 23 H 1.08997 * 109.47013 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47042 * 299.99475 * 4 2 1 25 25 H 1.08992 * 109.47331 * 60.00495 * 4 2 1 26 26 H 1.08999 * 109.46767 * 180.02562 * 5 4 2 27 27 H 1.09008 * 109.46926 * 299.99402 * 5 4 2 28 28 H 1.08994 * 109.47164 * 180.02562 * 6 5 4 29 29 H 1.08992 * 109.47048 * 59.99719 * 6 5 4 30 30 H 1.00901 * 110.99870 * 300.00455 * 8 7 6 31 31 H 1.00901 * 110.99961 * 63.95545 * 8 7 6 32 32 H 0.96996 * 119.99887 * 0.02562 * 11 9 7 33 33 H 0.97001 * 119.99781 * 359.97438 * 15 14 12 34 34 H 1.09005 * 109.46794 * 59.99844 * 20 2 1 35 35 H 1.08996 * 109.47040 * 300.00099 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0796 -1.4434 0.0002 7 6 3.5695 -0.7221 1.2495 8 7 4.0596 0.6627 1.2498 9 6 4.0709 -1.4332 2.4800 10 8 3.3749 -2.2619 3.0274 11 7 5.2929 -1.1483 2.9719 12 6 5.7489 -1.7948 4.0916 13 1 5.1290 -2.5327 4.5792 14 6 7.0085 -1.5007 4.5992 15 7 7.7625 -0.6026 4.0062 16 14 7.6300 -2.3822 6.1244 17 1 7.2367 -1.6156 7.3339 18 1 7.0375 -3.7424 6.1860 19 1 9.1100 -2.4892 6.0657 20 6 2.0400 -0.7213 1.2492 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.6767 -1.7489 -1.2493 25 1 1.6768 -0.2074 -2.1393 26 1 3.9333 -1.2352 -2.1392 27 1 3.9337 0.3059 -1.2488 28 1 5.1695 -1.4433 0.0006 29 1 3.7159 -2.4708 0.0000 30 1 5.0683 0.6893 1.2500 31 1 3.6844 1.1793 0.4684 32 1 5.8495 -0.4854 2.5343 33 1 7.4399 -0.1452 3.2140 34 1 1.6766 -1.7489 1.2491 35 1 1.6767 -0.2075 2.1391 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070904552.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:47 Heat of formation + Delta-G solvation = -85.753721 kcal Electronic energy + Delta-G solvation = -16474.161040 eV Core-core repulsion = 13890.758840 eV Total energy + Delta-G solvation = -2583.402200 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.44763 -39.09324 -36.44169 -34.92635 -32.97807 -32.68946 -29.73230 -27.47377 -26.90041 -24.30026 -22.72691 -21.27200 -20.08096 -19.93648 -18.30039 -17.20305 -16.43455 -16.22178 -15.84324 -15.52184 -15.26161 -15.10022 -14.81186 -14.11795 -13.65565 -13.42916 -13.38270 -12.93769 -12.83017 -12.75454 -12.41353 -12.00747 -11.95616 -11.89707 -11.57837 -11.46474 -11.41726 -11.13943 -10.39708 -10.13072 -9.71282 -8.96664 -6.09869 1.49245 1.52334 1.80531 1.95526 2.39704 2.94858 3.11580 3.46916 3.66850 3.71563 3.79950 4.06825 4.11406 4.31468 4.40629 4.45374 4.53555 4.68013 4.78846 4.93163 4.98777 5.03641 5.08458 5.18451 5.26896 5.31902 5.38924 5.54458 5.59911 5.90970 6.00988 6.46598 6.54906 6.70198 7.40949 7.87990 8.50673 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.050536 B = 0.006860 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.930979 B = 4080.833392 C = 4288.529364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.083 0.917 4 C -0.112 4.112 5 C -0.110 4.110 6 C -0.140 4.140 7 C 0.125 3.875 8 N -0.833 5.833 9 C 0.450 3.550 10 O -0.635 6.635 11 N -0.571 5.571 12 C -0.416 4.416 13 H 0.070 0.930 14 C -0.040 4.040 15 N -0.911 5.911 16 Si 1.137 2.863 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.269 1.269 20 C -0.079 4.079 21 H 0.049 0.951 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.339 0.661 31 H 0.359 0.641 32 H 0.384 0.616 33 H 0.259 0.741 34 H 0.052 0.948 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.909 3.784 -12.521 15.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.101 0.899 4 C -0.149 4.149 5 C -0.148 4.148 6 C -0.180 4.180 7 C 0.029 3.971 8 N -0.369 5.369 9 C 0.238 3.762 10 O -0.522 6.522 11 N -0.209 5.209 12 C -0.546 4.546 13 H 0.088 0.912 14 C -0.238 4.238 15 N -0.550 5.550 16 Si 0.956 3.044 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.194 1.194 20 C -0.118 4.118 21 H 0.068 0.932 22 H 0.096 0.904 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.178 0.822 32 H 0.219 0.781 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.441 3.193 -10.409 13.187 hybrid contribution -0.478 -0.043 -1.733 1.798 sum -7.919 3.150 -12.142 14.834 Atomic orbital electron populations 1.21783 0.93936 1.01907 1.02385 1.21167 0.96625 0.99606 0.93123 0.89881 1.21645 0.94556 1.00934 0.97809 1.21540 0.96477 1.00918 0.95863 1.22230 1.00193 1.00255 0.95364 1.20679 0.96948 0.88470 0.90994 1.58865 1.13851 1.11524 1.52690 1.20817 0.81979 0.85499 0.87908 1.90468 1.58311 1.39501 1.63916 1.41949 1.15591 1.37194 1.26130 1.20599 1.03850 1.23280 1.06821 0.91183 1.27876 0.92127 0.97645 1.06196 1.70941 1.38700 1.24743 1.20585 0.82590 0.76220 0.74758 0.70803 1.19585 1.20372 1.19391 1.21314 0.91083 1.00517 0.98847 0.93157 0.90403 0.93096 0.92426 0.88976 0.89869 0.90557 0.92609 0.92715 0.84680 0.82230 0.78145 0.93027 0.92920 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.19 71.98 0.66 -2.14 16 2 C -0.09 -1.96 2.46 -10.79 -0.03 -1.99 16 3 H 0.08 1.71 6.57 -2.39 -0.02 1.70 16 4 C -0.11 -2.15 5.20 30.60 0.16 -2.00 16 5 C -0.11 -2.29 5.66 30.59 0.17 -2.12 16 6 C -0.14 -4.33 4.87 30.59 0.15 -4.18 16 7 C 0.13 4.56 0.88 2.77 0.00 4.56 16 8 N -0.83 -25.92 8.61 -154.58 -1.33 -27.25 16 9 C 0.45 22.99 6.66 87.66 0.58 23.57 16 10 O -0.64 -37.85 15.67 -3.05 -0.05 -37.90 16 11 N -0.57 -30.54 5.18 -306.98 -1.59 -32.13 16 12 C -0.42 -24.81 9.68 84.04 0.81 -23.99 16 13 H 0.07 4.50 7.16 -2.91 -0.02 4.48 16 14 C -0.04 -2.22 5.50 84.93 0.47 -1.75 16 15 N -0.91 -51.64 13.68 21.66 0.30 -51.34 16 16 Si 1.14 49.75 29.92 68.60 2.05 51.80 16 17 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 20 C -0.08 -2.67 3.73 30.58 0.11 -2.56 16 21 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.08 1.35 6.76 -2.38 -0.02 1.34 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.34 10.55 7.44 -89.69 -0.67 9.88 16 31 H 0.36 8.52 5.44 -89.69 -0.49 8.03 16 32 H 0.38 18.79 5.11 -92.71 -0.47 18.31 16 33 H 0.26 14.23 6.78 -92.71 -0.63 13.60 16 34 H 0.05 1.97 7.87 -2.38 -0.02 1.95 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -71.97 274.63 2.09 -69.88 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: -0.38 Total: 39.54 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 3.10 Total: -12.60 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -2.63 Total: -110.72 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.05 Total: -37.90 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.80 kcal Total: -71.97 2.09 -69.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070904552.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.878 kcal (2) G-P(sol) polarization free energy of solvation -71.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds