Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46977 * 2 1 4 4 H 1.09002 * 109.30027 * 55.26003 * 3 2 1 5 5 N 1.46903 * 109.39027 * 295.51867 * 3 2 1 6 6 C 1.47187 * 110.17432 * 189.54683 * 5 3 2 7 7 C 1.52980 * 108.73121 * 68.99839 * 6 5 3 8 8 N 1.46020 * 109.97864 * 309.48663 * 7 6 5 9 9 C 1.46501 * 118.54965 * 198.39493 * 8 7 6 10 10 C 1.53001 * 109.47173 * 270.24609 * 9 8 7 11 11 C 1.50702 * 109.46999 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00111 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99691 * 180.02562 * 11 10 9 14 14 N 1.31507 * 120.00347 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99627 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47329 * 90.00200 * 15 13 11 17 17 H 1.48502 * 109.47203 * 210.00298 * 15 13 11 18 18 H 1.48505 * 109.47218 * 330.00213 * 15 13 11 19 19 C 1.33718 * 122.91546 * 18.65762 * 8 7 6 20 20 O 1.21283 * 118.62792 * 178.03451 * 19 8 7 21 21 H 1.09001 * 109.47424 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47474 * 300.00145 * 1 2 3 23 23 H 1.09007 * 109.47277 * 59.99477 * 1 2 3 24 24 H 1.08990 * 109.46916 * 240.00224 * 2 1 3 25 25 H 1.08999 * 109.47131 * 119.99865 * 2 1 3 26 26 H 1.00897 * 110.99942 * 66.17750 * 5 3 2 27 27 H 1.09005 * 109.58918 * 188.77052 * 6 5 3 28 28 H 1.09001 * 109.59478 * 309.06828 * 6 5 3 29 29 H 1.09008 * 109.37340 * 69.88019 * 7 6 5 30 30 H 1.09001 * 109.37925 * 189.64693 * 7 6 5 31 31 H 1.08996 * 109.47013 * 30.25013 * 9 8 7 32 32 H 1.08999 * 109.46822 * 150.24658 * 9 8 7 33 33 H 1.08996 * 109.47480 * 300.00118 * 10 9 8 34 34 H 1.08999 * 109.47206 * 60.00284 * 10 9 8 35 35 H 0.97003 * 119.99933 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6073 1.9776 0.8454 5 7 1.6397 2.1013 -1.2505 6 6 2.3084 3.4067 -1.3731 7 6 3.8031 3.1736 -1.6009 8 7 4.3229 2.2506 -0.5959 9 6 5.7695 2.2040 -0.3695 10 6 6.3985 1.1664 -1.3016 11 6 7.8867 1.1190 -1.0692 12 1 8.3387 1.7641 -0.3303 13 6 8.6712 0.2520 -1.7998 14 7 8.1210 -0.5331 -2.6999 15 14 10.5159 0.1928 -1.5112 16 1 10.8205 -0.8110 -0.4602 17 1 11.2023 -0.1869 -2.7722 18 1 10.9914 1.5293 -1.0719 19 6 3.5375 1.4421 0.1236 20 8 4.0551 0.6801 0.9124 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 0.6371 2.2024 -1.3011 27 1 1.8907 3.9534 -2.2187 28 1 2.1609 3.9804 -0.4581 29 1 3.9563 2.7549 -2.5956 30 1 4.3333 4.1227 -1.5225 31 1 6.2008 3.1841 -0.5731 32 1 5.9665 1.9285 0.6665 33 1 5.9672 0.1863 -1.0980 34 1 6.2015 1.4419 -2.3376 35 1 8.6730 -1.1428 -3.2142 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082476998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = -41.806022 kcal Electronic energy + Delta-G solvation = -16091.031506 eV Core-core repulsion = 13509.535022 eV Total energy + Delta-G solvation = -2581.496484 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.15921 -36.54261 -35.66756 -33.24828 -32.18823 -29.72975 -28.72879 -26.28231 -24.48389 -22.83263 -21.66174 -20.70602 -18.05992 -16.89724 -16.64050 -16.32071 -15.14009 -15.11204 -14.52722 -14.34331 -13.65893 -13.48628 -13.26936 -12.76258 -12.28251 -12.23409 -11.90789 -11.70785 -11.51326 -11.23495 -10.99066 -10.87106 -10.75839 -10.60459 -9.84235 -9.77961 -9.36924 -9.03736 -8.63143 -8.30252 -7.95332 -5.95329 -3.98373 3.09141 3.36007 3.41240 3.43853 3.52627 4.01957 4.50476 4.68451 4.86103 4.97812 5.10668 5.20426 5.33930 5.40569 5.42860 5.51631 5.69033 5.72418 6.00144 6.05847 6.17235 6.18833 6.39908 6.58724 6.68077 6.91838 6.97038 7.17208 7.69322 7.80436 8.06387 8.07827 8.42341 8.71261 9.08527 9.64965 11.16169 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.040242 B = 0.006310 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.627769 B = 4436.422649 C = 4703.352283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C 0.075 3.925 4 H 0.065 0.935 5 N -0.676 5.676 6 C 0.040 3.960 7 C 0.117 3.883 8 N -0.597 5.597 9 C 0.113 3.887 10 C 0.015 3.985 11 C -0.520 4.520 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.515 3.485 20 O -0.544 6.544 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.346 0.654 27 H 0.092 0.908 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.022 0.978 34 H 0.015 0.985 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.347 7.753 2.338 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.037 4.037 4 H 0.083 0.917 5 N -0.310 5.310 6 C -0.090 4.090 7 C -0.006 4.006 8 N -0.328 5.328 9 C -0.008 4.008 10 C -0.023 4.023 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.302 3.698 20 O -0.421 6.421 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.165 0.835 27 H 0.111 0.889 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.033 0.967 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.561 6.902 2.235 16.268 hybrid contribution 0.525 0.509 0.558 0.920 sum -14.037 7.410 2.793 16.116 Atomic orbital electron populations 1.21776 0.95610 1.02043 1.01280 1.21419 0.95350 0.93636 1.04133 1.21636 0.92908 0.97643 0.91558 0.91737 1.60808 1.12711 1.21429 1.36038 1.22329 0.94923 0.90399 1.01336 1.21465 0.92554 0.93427 0.93201 1.47621 1.08817 1.38873 1.37537 1.21921 0.76194 1.00667 1.02051 1.19339 0.94994 0.94037 0.93896 1.21108 0.92188 1.21678 1.20889 0.92603 1.24999 0.98709 0.95454 0.95146 1.69981 1.35516 1.23865 1.23858 0.86567 0.85360 0.78359 0.77533 1.20620 1.21247 1.19863 1.19837 0.88521 0.80544 0.80941 1.90718 1.74526 1.38923 1.37923 0.92269 0.93136 0.92483 0.90534 0.90119 0.83505 0.88936 0.94346 0.90761 0.90653 0.91985 0.90866 0.95964 0.96659 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 37.16 0.36 -1.10 16 2 C -0.11 -1.47 5.42 -26.73 -0.14 -1.61 16 3 C 0.08 1.08 2.70 -69.08 -0.19 0.89 16 4 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 5 N -0.68 -8.08 6.44 -107.97 -0.70 -8.78 16 6 C 0.04 0.43 6.63 -3.68 -0.02 0.41 16 7 C 0.12 1.70 6.63 -4.31 -0.03 1.67 16 8 N -0.60 -11.40 2.83 -174.57 -0.49 -11.89 16 9 C 0.11 2.51 5.21 -4.04 -0.02 2.49 16 10 C 0.02 0.42 5.29 -27.88 -0.15 0.27 16 11 C -0.52 -15.25 9.11 -34.44 -0.31 -15.56 16 12 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -27.81 13.29 55.43 0.74 -27.07 16 15 Si 0.89 22.23 29.54 -169.99 -5.02 17.20 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.52 10.08 7.12 -11.67 -0.08 9.99 16 20 O -0.54 -12.85 15.48 5.55 0.09 -12.77 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.49 6.91 -51.93 -0.36 0.13 16 24 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.08 1.21 7.65 -51.93 -0.40 0.81 16 26 H 0.35 3.11 7.45 -39.29 -0.29 2.82 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 30 H 0.08 0.94 7.97 -51.93 -0.41 0.53 16 31 H 0.06 1.25 7.91 -51.93 -0.41 0.84 16 32 H 0.07 1.74 7.26 -51.93 -0.38 1.36 16 33 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 286.54 15.07 4.32 4.32 Total: -1.00 -34.34 286.54 -7.35 -41.69 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.59 Total: -1.78 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -0.69 Total: -0.92 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.45 Total: -47.74 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.34 -7.35 -41.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082476998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.119 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds