Wall clock time and date at job start Mon Mar 30 2020 02:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46977 * 2 1 4 4 H 1.09002 * 109.30027 * 55.26003 * 3 2 1 5 5 N 1.46903 * 109.39027 * 295.51867 * 3 2 1 6 6 C 1.47187 * 110.17432 * 189.54683 * 5 3 2 7 7 C 1.52980 * 108.73121 * 68.99839 * 6 5 3 8 8 N 1.46020 * 109.97864 * 309.48663 * 7 6 5 9 9 C 1.46501 * 118.54965 * 198.39493 * 8 7 6 10 10 C 1.53001 * 109.47173 * 270.24609 * 9 8 7 11 11 C 1.50702 * 109.46999 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00111 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99691 * 180.02562 * 11 10 9 14 14 N 1.31507 * 120.00347 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99627 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47329 * 90.00200 * 15 13 11 17 17 H 1.48502 * 109.47203 * 210.00298 * 15 13 11 18 18 H 1.48505 * 109.47218 * 330.00213 * 15 13 11 19 19 C 1.33718 * 122.91546 * 18.65762 * 8 7 6 20 20 O 1.21283 * 118.62792 * 178.03451 * 19 8 7 21 21 H 1.09001 * 109.47424 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47474 * 300.00145 * 1 2 3 23 23 H 1.09007 * 109.47277 * 59.99477 * 1 2 3 24 24 H 1.08990 * 109.46916 * 240.00224 * 2 1 3 25 25 H 1.08999 * 109.47131 * 119.99865 * 2 1 3 26 26 H 1.00897 * 110.99942 * 66.17750 * 5 3 2 27 27 H 1.09005 * 109.58918 * 188.77052 * 6 5 3 28 28 H 1.09001 * 109.59478 * 309.06828 * 6 5 3 29 29 H 1.09008 * 109.37340 * 69.88019 * 7 6 5 30 30 H 1.09001 * 109.37925 * 189.64693 * 7 6 5 31 31 H 1.08996 * 109.47013 * 30.25013 * 9 8 7 32 32 H 1.08999 * 109.46822 * 150.24658 * 9 8 7 33 33 H 1.08996 * 109.47480 * 300.00118 * 10 9 8 34 34 H 1.08999 * 109.47206 * 60.00284 * 10 9 8 35 35 H 0.97003 * 119.99933 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6073 1.9776 0.8454 5 7 1.6397 2.1013 -1.2505 6 6 2.3084 3.4067 -1.3731 7 6 3.8031 3.1736 -1.6009 8 7 4.3229 2.2506 -0.5959 9 6 5.7695 2.2040 -0.3695 10 6 6.3985 1.1664 -1.3016 11 6 7.8867 1.1190 -1.0692 12 1 8.3387 1.7641 -0.3303 13 6 8.6712 0.2520 -1.7998 14 7 8.1210 -0.5331 -2.6999 15 14 10.5159 0.1928 -1.5112 16 1 10.8205 -0.8110 -0.4602 17 1 11.2023 -0.1869 -2.7722 18 1 10.9914 1.5293 -1.0719 19 6 3.5375 1.4421 0.1236 20 8 4.0551 0.6801 0.9124 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 0.6371 2.2024 -1.3011 27 1 1.8907 3.9534 -2.2187 28 1 2.1609 3.9804 -0.4581 29 1 3.9563 2.7549 -2.5956 30 1 4.3333 4.1227 -1.5225 31 1 6.2008 3.1841 -0.5731 32 1 5.9665 1.9285 0.6665 33 1 5.9672 0.1863 -1.0980 34 1 6.2015 1.4419 -2.3376 35 1 8.6730 -1.1428 -3.2142 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082476998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:20 Heat of formation + Delta-G solvation = -67.614532 kcal Electronic energy + Delta-G solvation = -16092.150647 eV Core-core repulsion = 13509.535022 eV Total energy + Delta-G solvation = -2582.615625 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.57903 -37.84691 -37.17629 -35.23760 -33.56711 -31.59638 -29.89120 -27.79067 -26.18927 -24.18302 -23.15466 -22.20123 -19.42254 -18.71034 -18.06572 -17.86483 -16.74727 -16.42370 -16.17956 -15.78045 -14.99151 -14.76358 -14.64242 -14.42227 -14.21839 -13.45136 -13.16026 -13.02941 -12.93080 -12.81253 -12.72759 -12.45520 -12.03740 -11.87663 -11.80565 -11.68005 -11.43406 -10.75291 -10.61168 -9.65482 -9.53774 -8.23910 -6.37396 1.37733 1.41204 1.51725 1.58238 2.08435 2.40363 3.05829 3.09162 3.47894 3.81649 3.95882 4.04746 4.27540 4.32616 4.38625 4.52260 4.54476 4.63905 4.77934 4.84633 4.88596 5.00862 5.15394 5.19805 5.24354 5.40677 5.44318 5.56195 5.72984 5.80949 6.14925 6.40827 6.54672 6.78201 7.19134 7.32364 8.88629 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.040242 B = 0.006310 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.627769 B = 4436.422649 C = 4703.352283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.088 3.912 4 H 0.091 0.909 5 N -0.683 5.683 6 C 0.048 3.952 7 C 0.105 3.895 8 N -0.600 5.600 9 C 0.126 3.874 10 C 0.028 3.972 11 C -0.545 4.545 12 H 0.066 0.934 13 C -0.002 4.002 14 N -0.935 5.935 15 Si 0.973 3.027 16 H -0.276 1.276 17 H -0.278 1.278 18 H -0.256 1.256 19 C 0.499 3.501 20 O -0.598 6.598 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.369 0.631 27 H 0.131 0.869 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.053 0.947 33 H -0.030 1.030 34 H -0.004 1.004 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.283 9.796 2.314 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C -0.025 4.025 4 H 0.108 0.892 5 N -0.320 5.320 6 C -0.081 4.081 7 C -0.017 4.017 8 N -0.331 5.331 9 C 0.004 3.996 10 C -0.010 4.010 11 C -0.583 4.583 12 H 0.084 0.916 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.797 3.203 16 H -0.202 1.202 17 H -0.203 1.203 18 H -0.180 1.180 19 C 0.288 3.712 20 O -0.480 6.480 21 H 0.082 0.918 22 H 0.086 0.914 23 H 0.093 0.907 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.191 0.809 27 H 0.149 0.851 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.071 0.929 33 H -0.012 1.012 34 H 0.014 0.986 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.550 8.987 2.187 18.093 hybrid contribution 0.804 -0.148 0.519 0.968 sum -14.746 8.840 2.706 17.404 Atomic orbital electron populations 1.21710 0.91867 1.03034 1.02956 1.21395 0.98466 0.92972 1.01700 1.21502 0.88651 0.98547 0.93785 0.89177 1.60704 1.14497 1.22324 1.34520 1.22387 0.91866 0.90079 1.03794 1.21851 0.95835 0.93096 0.90937 1.47759 1.07379 1.39610 1.38329 1.21493 0.78717 1.00070 0.99350 1.19127 0.94963 0.92945 0.93919 1.21560 0.93188 1.22273 1.21305 0.91575 1.26070 1.04658 0.94681 0.94527 1.70132 1.37849 1.24593 1.24875 0.85329 0.78142 0.79148 0.77687 1.20193 1.20344 1.17972 1.20965 0.91017 0.79330 0.79885 1.90679 1.76051 1.40980 1.40250 0.91755 0.91389 0.90726 0.93292 0.92424 0.80887 0.85142 0.92575 0.92444 0.88241 0.89228 0.92859 1.01192 0.98592 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.67 71.98 0.70 -1.68 16 2 C -0.11 -2.93 5.42 30.59 0.17 -2.77 16 3 C 0.09 2.41 2.70 44.03 0.12 2.53 16 4 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 5 N -0.68 -14.48 6.44 -495.51 -3.19 -17.68 16 6 C 0.05 0.86 6.63 86.24 0.57 1.44 16 7 C 0.11 2.88 6.63 86.46 0.57 3.45 16 8 N -0.60 -23.19 2.83 -825.21 -2.33 -25.53 16 9 C 0.13 5.79 5.21 86.38 0.45 6.24 16 10 C 0.03 1.64 5.29 29.85 0.16 1.80 16 11 C -0.54 -32.76 9.11 25.60 0.23 -32.53 16 12 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 13 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 14 N -0.93 -59.90 13.29 21.45 0.28 -59.62 16 15 Si 0.97 45.88 29.54 68.60 2.03 47.91 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 19 C 0.50 20.01 7.12 87.68 0.62 20.64 16 20 O -0.60 -29.96 15.48 -3.04 -0.05 -30.01 16 21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 1.03 6.91 -2.38 -0.02 1.01 16 24 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 1.82 7.65 -2.39 -0.02 1.80 16 26 H 0.37 5.11 7.45 -89.70 -0.67 4.44 16 27 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.06 0.88 8.08 -2.39 -0.02 0.86 16 29 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.10 2.23 7.97 -2.39 -0.02 2.21 16 31 H 0.09 3.57 7.91 -2.39 -0.02 3.56 16 32 H 0.05 2.64 7.26 -2.39 -0.02 2.62 16 33 H -0.03 -2.05 8.14 -2.39 -0.02 -2.07 16 34 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -79.52 286.54 1.19 -78.34 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 0.39 Total: 7.09 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 4.05 Total: -0.50 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -5.24 Total: -102.82 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.05 Total: -30.01 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -79.52 1.19 -78.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082476998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.721 kcal (2) G-P(sol) polarization free energy of solvation -79.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds