Wall clock time and date at job start Mon Mar 30 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47112 * 59.99775 * 9 7 5 11 11 H 1.48497 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47038 * 300.00131 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21274 * 119.99855 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99767 * 179.97438 * 14 13 3 17 17 C 1.52998 * 109.47174 * 179.97438 * 16 14 13 18 18 C 1.53939 * 113.73396 * 271.73166 * 17 16 14 19 19 N 1.47964 * 86.17829 * 221.91877 * 18 17 16 20 20 C 1.47965 * 90.76414 * 24.68748 * 19 18 17 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 26 26 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 27 27 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 28 28 H 1.09001 * 109.47037 * 299.99900 * 16 14 13 29 29 H 1.09004 * 109.47137 * 59.99859 * 16 14 13 30 30 H 1.09003 * 112.93308 * 43.43403 * 17 16 14 31 31 H 1.09003 * 113.75520 * 336.23152 * 18 17 16 32 32 H 1.09000 * 113.76003 * 107.59995 * 18 17 16 33 33 H 1.00898 * 111.00115 * 137.58050 * 19 18 17 34 34 H 1.08994 * 113.75785 * 220.99243 * 20 19 18 35 35 H 1.08994 * 113.85858 * 89.63776 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4995 2.2816 1.3821 11 1 6.3978 0.2179 2.6510 12 1 6.5975 0.1473 0.2350 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3395 2.6319 -0.4345 16 6 0.0367 3.3385 -2.6546 17 6 -1.3826 3.8942 -2.5214 18 6 -2.4812 2.8860 -2.9041 19 7 -3.1435 4.0181 -3.5888 20 6 -1.8451 4.7113 -3.7413 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.8293 -0.0610 2.9499 27 1 2.2720 2.1231 -1.9978 28 1 0.7281 4.1540 -2.8669 29 1 0.0680 2.6143 -3.4688 30 1 -1.5556 4.3932 -1.5679 31 1 -2.1412 2.1018 -3.5805 32 1 -3.0401 2.5008 -2.0512 33 1 -3.5093 3.7345 -4.4853 34 1 -1.8960 5.7844 -3.5574 35 1 -1.3178 4.4622 -4.6621 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082738499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:22 Heat of formation + Delta-G solvation = -43.096167 kcal Electronic energy + Delta-G solvation = -16007.832128 eV Core-core repulsion = 13426.279699 eV Total energy + Delta-G solvation = -2581.552429 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.03298 -39.72911 -36.85904 -34.25863 -33.07371 -31.69470 -28.93354 -26.87683 -26.17096 -24.77326 -22.09094 -21.03970 -20.36138 -18.90445 -17.47596 -17.33393 -16.94074 -16.62910 -16.10215 -15.82605 -14.79853 -14.57755 -14.53584 -13.92034 -13.52760 -13.40754 -13.15953 -12.96742 -12.86461 -12.63610 -12.44087 -12.17465 -12.03946 -11.71930 -11.56577 -11.44374 -11.03847 -10.59482 -10.44425 -9.83650 -9.55321 -8.14670 -6.32238 1.45282 1.47017 1.54812 1.97893 2.38184 2.73465 3.14582 3.17747 3.60814 3.85276 4.10989 4.38636 4.48436 4.50169 4.58744 4.62869 4.65325 4.76733 4.84753 4.92729 4.97470 5.08787 5.18713 5.28177 5.37016 5.46204 5.58152 5.68344 5.82426 5.97578 6.19861 6.40607 6.77107 7.09287 7.36014 7.70387 8.90371 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.051655 B = 0.006024 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.927179 B = 4647.146124 C = 4993.466275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.709 5.709 14 C 0.493 3.507 15 O -0.590 6.590 16 C -0.122 4.122 17 C -0.103 4.103 18 C 0.011 3.989 19 N -0.653 5.653 20 C 0.020 3.980 21 H 0.043 0.957 22 H 0.047 0.953 23 H 0.022 0.978 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.264 0.736 27 H 0.403 0.597 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.329 0.671 34 H 0.090 0.910 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.754 4.437 -14.202 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.359 5.359 14 C 0.280 3.720 15 O -0.471 6.471 16 C -0.162 4.162 17 C -0.122 4.122 18 C -0.119 4.119 19 N -0.278 5.278 20 C -0.110 4.110 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.238 0.762 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.142 0.858 34 H 0.109 0.891 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.741 4.747 -12.773 14.787 hybrid contribution 1.564 -0.699 -0.154 1.720 sum -4.177 4.047 -12.927 14.175 Atomic orbital electron populations 1.21665 0.96953 0.98975 1.00313 1.21773 0.93754 0.99291 1.01133 1.18311 0.93474 0.89131 0.81762 0.98831 1.21584 0.91590 1.38826 1.06650 0.91018 1.25784 1.03287 0.94421 0.95062 1.70051 1.37139 1.38426 1.09876 0.85437 0.79168 0.78424 0.77524 1.19681 1.21335 1.18854 1.46299 1.15911 1.56323 1.17333 1.21370 0.81445 0.78450 0.90690 1.90656 1.52460 1.61137 1.42866 1.21741 0.97957 1.01929 0.94550 1.22690 0.92659 0.97434 0.99424 1.23725 0.95105 0.94098 0.98968 1.66838 1.21945 1.15674 1.23370 1.23813 0.89708 1.00127 0.97311 0.93787 0.93359 0.95897 0.91327 0.94051 0.92683 0.76199 0.86539 0.86570 0.90763 0.89911 0.91826 0.85799 0.89141 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.51 71.98 0.61 -4.88 16 2 C -0.12 -5.94 5.45 30.60 0.17 -5.77 16 3 C 0.28 14.13 2.24 44.25 0.10 14.23 16 4 H -0.01 -0.38 7.58 -2.39 -0.02 -0.40 16 5 C -0.55 -28.81 8.73 25.60 0.22 -28.59 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.01 0.77 5.29 84.66 0.45 1.22 16 8 N -0.92 -52.73 11.29 21.45 0.24 -52.49 16 9 Si 0.97 41.87 29.54 68.60 2.03 43.89 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 13 N -0.71 -28.13 5.02 -446.08 -2.24 -30.37 16 14 C 0.49 18.32 6.40 87.66 0.56 18.88 16 15 O -0.59 -27.40 12.89 -3.01 -0.04 -27.43 16 16 C -0.12 -2.90 5.55 29.85 0.17 -2.73 16 17 C -0.10 -2.57 3.34 -10.15 -0.03 -2.60 16 18 C 0.01 0.27 8.46 86.41 0.73 1.00 16 19 N -0.65 -13.87 8.53 -524.12 -4.47 -18.34 16 20 C 0.02 0.36 8.47 86.40 0.73 1.09 16 21 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.05 2.06 5.64 -2.39 -0.01 2.04 16 23 H 0.02 1.11 7.85 -2.38 -0.02 1.10 16 24 H 0.07 3.81 5.95 -2.39 -0.01 3.80 16 25 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.40 13.25 8.54 -92.71 -0.79 12.45 16 28 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.12 2.10 7.84 -2.39 -0.02 2.09 16 30 H 0.07 2.39 7.66 -2.39 -0.02 2.37 16 31 H 0.08 1.65 7.89 -2.39 -0.02 1.63 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.33 5.31 8.91 -89.70 -0.80 4.51 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -67.01 283.75 -1.28 -68.29 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -0.50 Total: 24.59 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 3.71 Total: -8.14 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -6.47 Total: -101.20 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.04 Total: -27.43 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -67.01 -1.28 -68.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082738499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.192 kcal (2) G-P(sol) polarization free energy of solvation -67.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds