Wall clock time and date at job start Mon Mar 30 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47010 * 2 1 4 4 N 1.46507 * 109.47126 * 179.97438 * 3 2 1 5 5 C 1.37193 * 119.99633 * 274.74687 * 4 3 2 6 6 H 1.07997 * 119.99566 * 120.57872 * 5 4 3 7 7 C 1.38877 * 120.00135 * 300.57147 * 5 4 3 8 8 N 1.31481 * 120.00041 * 4.60599 * 7 5 4 9 9 Si 1.86803 * 120.00034 * 184.60615 * 7 5 4 10 10 H 1.48498 * 109.46882 * 89.99896 * 9 7 5 11 11 H 1.48496 * 109.46793 * 210.00120 * 9 7 5 12 12 H 1.48500 * 109.46776 * 330.00252 * 9 7 5 13 13 C 1.34769 * 119.99940 * 94.74549 * 4 3 2 14 14 O 1.21589 * 120.00335 * 4.46052 * 13 4 3 15 15 N 1.34777 * 119.99830 * 184.45748 * 13 4 3 16 16 C 1.47013 * 125.65079 * 355.25002 * 15 13 4 17 17 C 1.54325 * 107.27384 * 181.32277 * 16 15 13 18 18 C 1.55157 * 102.94075 * 22.19461 * 17 16 15 19 19 C 1.47425 * 125.64748 * 175.55777 * 15 13 4 20 20 H 1.08998 * 109.47302 * 300.00527 * 1 2 3 21 21 H 1.08996 * 109.46964 * 60.00185 * 1 2 3 22 22 H 1.09000 * 109.46909 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47397 * 239.99928 * 2 1 3 24 24 H 1.09004 * 109.47283 * 119.99678 * 2 1 3 25 25 H 1.08998 * 109.47518 * 59.99605 * 3 2 1 26 26 H 1.08996 * 109.47106 * 299.99729 * 3 2 1 27 27 H 0.96995 * 120.00033 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.88635 * 300.74393 * 16 15 13 29 29 H 1.09008 * 109.88214 * 61.90696 * 16 15 13 30 30 H 1.08996 * 110.72172 * 263.83084 * 17 16 15 31 31 H 1.09003 * 110.72125 * 140.55817 * 17 16 15 32 32 H 1.08996 * 111.00240 * 206.42154 * 18 17 16 33 33 H 1.09002 * 111.00211 * 82.57099 * 18 17 16 34 34 H 1.08997 * 110.37359 * 274.45221 * 19 15 13 35 35 H 1.09007 * 110.36944 * 36.66369 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1904 1.3444 1.1850 6 1 4.8724 0.5229 1.3477 7 6 4.0074 2.3014 2.1746 8 7 3.1115 3.2502 2.0139 9 14 5.0341 2.2407 3.7340 10 1 6.2736 3.0357 3.5417 11 1 4.2531 2.8067 4.8631 12 1 5.3918 0.8316 4.0365 13 6 4.1794 1.5389 -1.1623 14 8 3.5747 1.7073 -2.2036 15 7 5.5241 1.4487 -1.1709 16 6 6.3836 1.3449 0.0173 17 6 7.8449 1.2997 -0.4768 18 6 7.7567 1.9500 -1.8827 19 6 6.3772 1.4441 -2.3733 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 2.9839 3.9188 2.7049 28 1 6.2359 2.2137 0.6587 29 1 6.1493 0.4325 0.5658 30 1 8.1958 0.2703 -0.5493 31 1 8.4917 1.8834 0.1783 32 1 8.5571 1.5915 -2.5299 33 1 7.7713 3.0376 -1.8117 34 1 6.4639 0.4338 -2.7732 35 1 5.9714 2.1168 -3.1289 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085960733.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:19 Heat of formation + Delta-G solvation = -21.200642 kcal Electronic energy + Delta-G solvation = -16716.701915 eV Core-core repulsion = 14136.098947 eV Total energy + Delta-G solvation = -2580.602968 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.22293 -36.71623 -34.93470 -32.83645 -31.29376 -30.16942 -28.36400 -25.59402 -24.70648 -22.06298 -20.71399 -20.32265 -18.96388 -17.69783 -15.94350 -15.11359 -14.87644 -14.67512 -14.03283 -13.65513 -13.38230 -12.90947 -12.62223 -12.42186 -12.04362 -11.67179 -11.44664 -11.40669 -11.11794 -10.94719 -10.90140 -10.72058 -10.51066 -10.28411 -10.23165 -9.90428 -9.58665 -9.00276 -8.58931 -7.67877 -6.91410 -6.20431 -4.15961 3.13468 3.21775 3.22920 3.92866 4.19873 4.55139 4.99979 5.04726 5.26744 5.37331 5.62992 5.86879 5.87586 5.92399 5.93500 6.13959 6.18093 6.22508 6.35241 6.53276 6.57141 6.60460 6.67874 6.79723 6.88790 6.90936 7.19760 7.40535 7.46696 7.63475 8.25442 8.45936 8.65227 9.19075 9.83982 10.27140 10.79489 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.014045 C = 0.008832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.109921 B = 1993.094288 C = 3169.579443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.138 3.862 4 N -0.470 5.470 5 C -0.341 4.341 6 H 0.084 0.916 7 C 0.051 3.949 8 N -0.865 5.865 9 Si 0.903 3.097 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.706 3.294 14 O -0.642 6.642 15 N -0.631 5.631 16 C 0.126 3.874 17 C -0.145 4.145 18 C -0.133 4.133 19 C 0.128 3.872 20 H 0.051 0.949 21 H 0.048 0.952 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.091 0.909 26 H 0.052 0.948 27 H 0.266 0.734 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 -3.628 -0.983 6.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.014 3.986 4 N -0.194 5.194 5 C -0.469 4.469 6 H 0.102 0.898 7 C -0.155 4.155 8 N -0.501 5.501 9 Si 0.729 3.271 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.410 3.590 14 O -0.526 6.526 15 N -0.370 5.370 16 C 0.003 3.997 17 C -0.183 4.183 18 C -0.171 4.171 19 C 0.004 3.996 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.110 0.890 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.059 -3.357 -1.385 6.227 hybrid contribution 0.525 0.073 1.020 1.149 sum 5.584 -3.284 -0.365 6.488 Atomic orbital electron populations 1.21661 0.96789 1.00274 1.01351 1.21876 0.94422 0.99965 1.01007 1.21209 0.81177 0.93793 1.02396 1.42325 1.03800 1.70051 1.03221 1.19476 1.25421 1.09027 0.93011 0.89847 1.25715 0.95946 0.94586 0.99299 1.69851 1.31383 1.14436 1.34416 0.86321 0.80213 0.78805 0.81787 1.20030 1.20905 1.19271 1.15959 0.79659 0.78408 0.84926 1.90720 1.67477 1.61490 1.32941 1.47110 1.04112 1.79428 1.06349 1.22274 0.86244 1.02675 0.88503 1.22861 0.98222 1.00507 0.96685 1.22744 0.96691 1.00785 0.96888 1.21819 0.89162 0.99732 0.88908 0.92967 0.93239 0.93804 0.93483 0.92300 0.89045 0.92949 0.92319 0.90796 0.91418 0.91586 0.91045 0.90938 0.91111 0.93193 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.91 37.16 0.37 -2.11 16 2 C -0.13 -2.83 6.24 -26.73 -0.17 -3.00 16 3 C 0.14 3.45 5.14 -4.04 -0.02 3.43 16 4 N -0.47 -12.40 2.40 -120.18 -0.29 -12.69 16 5 C -0.34 -8.68 6.01 -14.92 -0.09 -8.77 16 6 H 0.08 2.04 5.22 -52.49 -0.27 1.77 16 7 C 0.05 1.30 5.17 -17.47 -0.09 1.20 16 8 N -0.87 -23.49 11.69 55.49 0.65 -22.84 16 9 Si 0.90 19.30 29.56 -169.99 -5.02 14.28 16 10 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 13 C 0.71 18.76 8.31 -86.92 -0.72 18.04 16 14 O -0.64 -18.53 16.06 5.29 0.08 -18.45 16 15 N -0.63 -14.19 3.33 -176.24 -0.59 -14.77 16 16 C 0.13 2.49 5.11 -3.07 -0.02 2.47 16 17 C -0.14 -2.14 6.95 -24.90 -0.17 -2.32 16 18 C -0.13 -1.91 7.09 -24.58 -0.17 -2.09 16 19 C 0.13 2.33 6.93 -2.53 -0.02 2.32 16 20 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 25 H 0.09 2.40 6.26 -51.93 -0.32 2.07 16 26 H 0.05 1.37 7.23 -51.93 -0.38 0.99 16 27 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.07 1.62 6.90 -51.93 -0.36 1.26 16 29 H 0.07 1.36 5.79 -51.92 -0.30 1.06 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.28 7.99 -51.92 -0.41 0.87 16 LS Contribution 280.32 15.07 4.22 4.22 Total: -1.00 -30.37 280.32 -7.45 -37.82 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.41 Total: 3.24 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -1.10 Total: 9.18 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.23 Total: -50.30 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.08 Total: -18.45 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.37 -7.45 -37.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085960733.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.619 kcal (2) G-P(sol) polarization free energy of solvation -30.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds