Wall clock time and date at job start Mon Mar 30 2020 03:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47010 * 2 1 4 4 N 1.46507 * 109.47126 * 179.97438 * 3 2 1 5 5 C 1.37193 * 119.99633 * 274.74687 * 4 3 2 6 6 H 1.07997 * 119.99566 * 120.57872 * 5 4 3 7 7 C 1.38877 * 120.00135 * 300.57147 * 5 4 3 8 8 N 1.31481 * 120.00041 * 4.60599 * 7 5 4 9 9 Si 1.86803 * 120.00034 * 184.60615 * 7 5 4 10 10 H 1.48498 * 109.46882 * 89.99896 * 9 7 5 11 11 H 1.48496 * 109.46793 * 210.00120 * 9 7 5 12 12 H 1.48500 * 109.46776 * 330.00252 * 9 7 5 13 13 C 1.34769 * 119.99940 * 94.74549 * 4 3 2 14 14 O 1.21589 * 120.00335 * 4.46052 * 13 4 3 15 15 N 1.34777 * 119.99830 * 184.45748 * 13 4 3 16 16 C 1.47013 * 125.65079 * 355.25002 * 15 13 4 17 17 C 1.54325 * 107.27384 * 181.32277 * 16 15 13 18 18 C 1.55157 * 102.94075 * 22.19461 * 17 16 15 19 19 C 1.47425 * 125.64748 * 175.55777 * 15 13 4 20 20 H 1.08998 * 109.47302 * 300.00527 * 1 2 3 21 21 H 1.08996 * 109.46964 * 60.00185 * 1 2 3 22 22 H 1.09000 * 109.46909 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47397 * 239.99928 * 2 1 3 24 24 H 1.09004 * 109.47283 * 119.99678 * 2 1 3 25 25 H 1.08998 * 109.47518 * 59.99605 * 3 2 1 26 26 H 1.08996 * 109.47106 * 299.99729 * 3 2 1 27 27 H 0.96995 * 120.00033 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.88635 * 300.74393 * 16 15 13 29 29 H 1.09008 * 109.88214 * 61.90696 * 16 15 13 30 30 H 1.08996 * 110.72172 * 263.83084 * 17 16 15 31 31 H 1.09003 * 110.72125 * 140.55817 * 17 16 15 32 32 H 1.08996 * 111.00240 * 206.42154 * 18 17 16 33 33 H 1.09002 * 111.00211 * 82.57099 * 18 17 16 34 34 H 1.08997 * 110.37359 * 274.45221 * 19 15 13 35 35 H 1.09007 * 110.36944 * 36.66369 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1904 1.3444 1.1850 6 1 4.8724 0.5229 1.3477 7 6 4.0074 2.3014 2.1746 8 7 3.1115 3.2502 2.0139 9 14 5.0341 2.2407 3.7340 10 1 6.2736 3.0357 3.5417 11 1 4.2531 2.8067 4.8631 12 1 5.3918 0.8316 4.0365 13 6 4.1794 1.5389 -1.1623 14 8 3.5747 1.7073 -2.2036 15 7 5.5241 1.4487 -1.1709 16 6 6.3836 1.3449 0.0173 17 6 7.8449 1.2997 -0.4768 18 6 7.7567 1.9500 -1.8827 19 6 6.3772 1.4441 -2.3733 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 2.9839 3.9188 2.7049 28 1 6.2359 2.2137 0.6587 29 1 6.1493 0.4325 0.5658 30 1 8.1958 0.2703 -0.5493 31 1 8.4917 1.8834 0.1783 32 1 8.5571 1.5915 -2.5299 33 1 7.7713 3.0376 -1.8117 34 1 6.4639 0.4338 -2.7732 35 1 5.9714 2.1168 -3.1289 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085960733.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:18 Heat of formation + Delta-G solvation = -39.501061 kcal Electronic energy + Delta-G solvation = -16717.495481 eV Core-core repulsion = 14136.098947 eV Total energy + Delta-G solvation = -2581.396534 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.07195 -38.36911 -36.94684 -34.60280 -33.21074 -31.76446 -29.85054 -27.43196 -26.53271 -23.70063 -22.31375 -21.79659 -20.89715 -19.54585 -17.63327 -16.92545 -16.75744 -16.48167 -15.74844 -15.40565 -15.07679 -14.36671 -14.25052 -13.91301 -13.74623 -13.36172 -13.19712 -13.11532 -12.75902 -12.64881 -12.49443 -12.14021 -12.02969 -11.98025 -11.64801 -11.47251 -11.39075 -11.05274 -10.55268 -9.58983 -8.82735 -8.15686 -6.17867 1.45230 1.46280 1.57151 2.16962 2.40639 2.55000 3.06939 3.61874 3.93209 3.96548 4.18621 4.20928 4.35432 4.48994 4.57942 4.65761 4.78545 4.86960 4.97181 4.99378 5.10134 5.12745 5.16277 5.23597 5.25145 5.38554 5.42855 5.53073 5.59920 5.85366 6.28059 6.49268 6.76494 7.20372 7.84312 8.26820 8.84789 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.014045 C = 0.008832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.109921 B = 1993.094288 C = 3169.579443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 C 0.140 3.860 4 N -0.483 5.483 5 C -0.346 4.346 6 H 0.093 0.907 7 C 0.006 3.994 8 N -0.905 5.905 9 Si 0.972 3.028 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.253 1.253 13 C 0.686 3.314 14 O -0.679 6.679 15 N -0.638 5.638 16 C 0.121 3.879 17 C -0.130 4.130 18 C -0.118 4.118 19 C 0.116 3.884 20 H 0.056 0.944 21 H 0.050 0.950 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.267 0.733 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.741 -4.755 -0.179 9.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C 0.015 3.985 4 N -0.207 5.207 5 C -0.473 4.473 6 H 0.111 0.889 7 C -0.196 4.196 8 N -0.542 5.542 9 Si 0.794 3.206 10 H -0.191 1.191 11 H -0.213 1.213 12 H -0.176 1.176 13 C 0.391 3.609 14 O -0.567 6.567 15 N -0.375 5.375 16 C -0.001 4.001 17 C -0.168 4.168 18 C -0.156 4.156 19 C -0.007 4.007 20 H 0.075 0.925 21 H 0.070 0.930 22 H 0.092 0.908 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.132 0.868 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.243 -4.504 -0.581 8.549 hybrid contribution -0.157 0.431 0.715 0.850 sum 7.086 -4.073 0.134 8.174 Atomic orbital electron populations 1.21609 0.93630 1.02340 1.01697 1.21730 0.97134 0.96942 1.00220 1.21167 0.81166 0.95882 1.00240 1.42607 1.04364 1.69976 1.03727 1.19765 1.25394 1.09495 0.92691 0.88939 1.26539 0.96672 0.93878 1.02540 1.70004 1.33082 1.15421 1.35681 0.85255 0.78506 0.79573 0.77220 1.19098 1.21327 1.17623 1.16328 0.81271 0.78802 0.84537 1.90661 1.68794 1.63224 1.34001 1.47303 1.03252 1.78042 1.08940 1.22291 0.89179 1.01053 0.87582 1.22825 0.94526 1.02624 0.96845 1.22735 0.95078 1.00599 0.97167 1.22154 0.90618 1.00495 0.87394 0.92514 0.93048 0.90822 0.94566 0.92534 0.90714 0.95328 0.92396 0.93483 0.92064 0.89075 0.88783 0.86756 0.91478 0.91712 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 9.91 71.98 0.71 -3.86 16 2 C -0.12 -5.21 6.24 30.59 0.19 -5.02 16 3 C 0.14 7.24 5.14 86.38 0.44 7.68 16 4 N -0.48 -26.26 2.40 -652.39 -1.57 -27.83 16 5 C -0.35 -17.77 6.01 84.01 0.50 -17.27 16 6 H 0.09 4.51 5.22 -2.91 -0.02 4.49 16 7 C 0.01 0.32 5.17 84.90 0.44 0.76 16 8 N -0.91 -50.29 11.69 21.65 0.25 -50.04 16 9 Si 0.97 39.16 29.56 68.60 2.03 41.18 16 10 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 11 H -0.29 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 13 C 0.69 37.66 8.31 179.06 1.49 39.15 16 14 O -0.68 -40.88 16.06 -4.00 -0.06 -40.94 16 15 N -0.64 -28.74 3.33 -829.77 -2.76 -31.50 16 16 C 0.12 4.64 5.11 86.73 0.44 5.08 16 17 C -0.13 -3.36 6.95 31.78 0.22 -3.14 16 18 C -0.12 -2.99 7.09 31.99 0.23 -2.76 16 19 C 0.12 4.11 6.93 86.85 0.60 4.72 16 20 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 21 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.07 4.10 6.26 -2.39 -0.01 4.08 16 26 H 0.03 1.57 7.23 -2.39 -0.02 1.55 16 27 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.05 2.03 6.90 -2.39 -0.02 2.02 16 29 H 0.06 2.38 5.79 -2.38 -0.01 2.37 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 1.89 7.99 -2.38 -0.02 1.87 16 Total: -1.00 -68.35 280.32 4.22 -64.13 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 1.06 Total: 19.66 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 5.27 Total: 25.34 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -4.07 Total: -109.37 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.06 Total: -40.94 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.18 kcal Total: -68.35 4.22 -64.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085960733.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.626 kcal (2) G-P(sol) polarization free energy of solvation -68.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds