Wall clock time and date at job start Mon Mar 30 2020 03:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.52547 * 2 1 4 4 C 1.53040 * 109.49509 * 120.07518 * 2 1 3 5 5 C 1.53036 * 109.54107 * 181.31598 * 4 2 1 6 6 C 1.53625 * 109.24086 * 298.51498 * 5 4 2 7 7 N 1.46930 * 108.54483 * 54.85709 * 6 5 4 8 8 C 1.34771 * 120.63401 * 126.37015 * 7 6 5 9 9 O 1.21580 * 119.99930 * 164.64015 * 8 7 6 10 10 N 1.34775 * 120.00003 * 344.35932 * 8 7 6 11 11 C 1.46502 * 120.00035 * 344.22854 * 10 8 7 12 12 C 1.37192 * 119.99834 * 164.22924 * 10 8 7 13 13 H 1.07994 * 120.00573 * 21.43139 * 12 10 8 14 14 C 1.38878 * 119.99731 * 201.43712 * 12 10 8 15 15 N 1.31477 * 120.00353 * 10.81474 * 14 12 10 16 16 Si 1.86800 * 119.99927 * 190.81353 * 14 12 10 17 17 H 1.48505 * 109.46840 * 94.98844 * 16 14 12 18 18 H 1.48495 * 109.47275 * 214.98589 * 16 14 12 19 19 H 1.48495 * 109.47219 * 334.98895 * 16 14 12 20 20 C 1.46929 * 118.73061 * 306.08885 * 7 6 5 21 21 H 1.09004 * 109.46979 * 180.08275 * 1 2 3 22 22 H 1.08999 * 109.47779 * 300.08647 * 1 2 3 23 23 H 1.09006 * 109.46814 * 60.08481 * 1 2 3 24 24 H 1.09004 * 109.46291 * 301.34021 * 4 2 1 25 25 H 1.09005 * 109.45727 * 61.30022 * 4 2 1 26 26 H 1.09005 * 109.49506 * 58.58460 * 5 4 2 27 27 H 1.08991 * 109.50038 * 178.65090 * 5 4 2 28 28 H 1.08999 * 109.74115 * 295.11245 * 6 5 4 29 29 H 1.09006 * 109.66546 * 174.54406 * 6 5 4 30 30 H 1.08997 * 109.46829 * 97.59302 * 11 10 8 31 31 H 1.08996 * 109.46966 * 217.59149 * 11 10 8 32 32 H 1.08997 * 109.47204 * 337.59457 * 11 10 8 33 33 H 0.96997 * 120.00569 * 180.02562 * 15 14 12 34 34 H 1.09007 * 109.58265 * 173.64816 * 20 7 6 35 35 H 1.08997 * 109.59116 * 293.92828 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7230 1.2484 5 6 3.5707 -0.6950 1.2662 6 6 4.1050 -1.4319 0.0286 7 7 3.5047 -0.8292 -1.1694 8 6 4.2812 -0.3866 -2.1781 9 8 3.7902 -0.1518 -3.2653 10 7 5.6010 -0.1989 -1.9801 11 6 6.1356 -0.1361 -0.6175 12 6 6.4439 -0.0666 -3.0544 13 1 6.0514 0.2321 -4.0152 14 6 7.8018 -0.3170 -2.9066 15 7 8.2504 -0.8815 -1.8071 16 14 8.9912 0.1482 -4.2698 17 1 9.5683 1.4871 -3.9876 18 1 10.0825 -0.8565 -4.3389 19 1 8.2685 0.1840 -5.5665 20 6 2.0413 -0.7239 -1.2494 21 1 -0.3633 -1.0277 0.0015 22 1 -0.3634 0.5151 0.8892 23 1 -0.3633 0.5126 -0.8908 24 1 1.6580 -0.2243 2.1390 25 1 1.6966 -1.7572 1.2354 26 1 3.9158 0.3389 1.2542 27 1 3.9332 -1.1890 2.1676 28 1 3.8338 -2.4862 0.0823 29 1 5.1896 -1.3333 -0.0173 30 1 6.5381 -1.1103 -0.3399 31 1 6.9282 0.6108 -0.5723 32 1 5.3383 0.1379 0.0734 33 1 9.1989 -1.0561 -1.7037 34 1 1.7638 -0.1580 -2.1388 35 1 1.6054 -1.7216 -1.3005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085966184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:56 Heat of formation + Delta-G solvation = 12.730718 kcal Electronic energy + Delta-G solvation = -16711.945841 eV Core-core repulsion = 14132.814247 eV Total energy + Delta-G solvation = -2579.131594 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.78495 -37.08769 -34.95491 -33.26979 -31.37445 -31.11154 -27.27686 -25.85967 -25.34601 -23.14703 -21.81708 -20.21113 -18.76820 -17.01863 -16.28480 -15.27755 -14.79834 -14.67424 -14.20902 -14.03002 -13.46312 -13.40124 -13.24930 -12.52901 -12.30523 -11.94141 -11.75003 -11.44490 -11.16820 -11.05946 -10.81305 -10.80053 -10.52284 -10.28036 -10.15263 -10.07512 -9.63863 -8.83819 -8.63402 -7.80945 -7.51104 -6.15938 -3.72742 3.25280 3.31990 3.37834 3.79657 4.28835 4.36655 4.90413 5.04576 5.10223 5.23902 5.33067 5.41522 5.60765 5.67716 5.74553 5.81326 5.92933 5.98263 6.10753 6.14609 6.21209 6.27730 6.38984 6.43915 6.51765 6.64645 6.90454 7.19991 7.34831 7.69173 7.84426 8.48645 8.79876 9.34069 9.63462 10.19223 10.88902 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.050388 B = 0.007743 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.553471 B = 3615.198010 C = 4027.251504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.070 0.930 4 C -0.109 4.109 5 C -0.136 4.136 6 C 0.058 3.942 7 N -0.637 5.637 8 C 0.671 3.329 9 O -0.620 6.620 10 N -0.480 5.480 11 C 0.110 3.890 12 C -0.286 4.286 13 H 0.097 0.903 14 C 0.022 3.978 15 N -0.899 5.899 16 Si 0.928 3.072 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.271 1.271 20 C 0.141 3.859 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.138 0.862 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.263 0.737 34 H 0.083 0.917 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.514 -0.135 8.615 12.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.089 0.911 4 C -0.147 4.147 5 C -0.174 4.174 6 C -0.064 4.064 7 N -0.377 5.377 8 C 0.375 3.625 9 O -0.502 6.502 10 N -0.205 5.205 11 C -0.033 4.033 12 C -0.415 4.415 13 H 0.115 0.885 14 C -0.179 4.179 15 N -0.540 5.540 16 Si 0.755 3.245 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.195 1.195 20 C 0.016 3.984 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.155 0.845 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.533 -0.051 8.058 11.737 hybrid contribution 0.686 0.077 -0.338 0.768 sum -7.848 0.026 7.720 11.008 Atomic orbital electron populations 1.21750 0.95082 1.01649 1.01536 1.21567 0.95232 1.00257 0.95928 0.91127 1.21534 0.95771 1.00299 0.97091 1.22045 0.95659 1.01389 0.98317 1.23080 1.03939 0.95435 0.83958 1.47177 1.05120 1.65729 1.19626 1.16078 0.82169 0.81255 0.83009 1.90698 1.73392 1.61405 1.24731 1.42745 1.03754 1.67706 1.06248 1.21871 0.96527 1.01714 0.83169 1.19577 0.87856 1.43134 0.90931 0.88491 1.25250 0.97897 0.96704 0.98010 1.69995 1.14782 1.42348 1.26897 0.85877 0.79660 0.77918 0.81029 1.20696 1.21148 1.19535 1.21251 0.80358 0.99295 0.97488 0.92742 0.92839 0.92579 0.92498 0.92205 0.91599 0.91455 0.93436 0.84472 0.91302 0.92295 0.94110 0.92650 0.89838 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.20 37.16 0.34 -1.23 16 2 C -0.11 -1.53 2.87 -90.50 -0.26 -1.79 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.11 -1.37 5.16 -26.69 -0.14 -1.50 16 5 C -0.14 -1.88 5.66 -26.39 -0.15 -2.03 16 6 C 0.06 1.02 5.43 -3.48 -0.02 1.00 16 7 N -0.64 -13.19 2.89 -178.23 -0.51 -13.71 16 8 C 0.67 17.47 7.87 -86.93 -0.68 16.79 16 9 O -0.62 -18.20 15.63 5.30 0.08 -18.11 16 10 N -0.48 -12.82 3.01 -159.14 -0.48 -13.30 16 11 C 0.11 2.50 6.73 59.85 0.40 2.91 16 12 C -0.29 -8.27 9.39 -14.92 -0.14 -8.41 16 13 H 0.10 2.94 7.34 -52.49 -0.39 2.56 16 14 C 0.02 0.60 5.17 -17.47 -0.09 0.51 16 15 N -0.90 -24.33 10.49 55.49 0.58 -23.75 16 16 Si 0.93 21.45 29.57 -169.99 -5.03 16.43 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.14 2.45 5.66 -3.71 -0.02 2.43 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.96 7.05 -51.93 -0.37 0.60 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.14 2.64 2.64 -90.58 -0.24 2.40 16 30 H 0.07 1.61 6.00 -51.93 -0.31 1.30 16 31 H 0.06 1.42 7.34 -51.93 -0.38 1.04 16 32 H 0.04 0.80 4.02 -51.93 -0.21 0.59 16 33 H 0.26 6.78 8.31 -40.82 -0.34 6.45 16 34 H 0.08 1.61 7.16 -51.93 -0.37 1.24 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 269.19 15.07 4.06 4.06 Total: -1.00 -31.56 269.19 -7.26 -38.82 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.20 Total: 0.90 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -0.76 Total: 8.67 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.41 Total: -50.76 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.08 Total: -18.11 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.56 -7.26 -38.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085966184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.550 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds