Wall clock time and date at job start Mon Mar 30 2020 03:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.52547 * 2 1 4 4 C 1.53040 * 109.49509 * 120.07518 * 2 1 3 5 5 C 1.53036 * 109.54107 * 181.31598 * 4 2 1 6 6 C 1.53625 * 109.24086 * 298.51498 * 5 4 2 7 7 N 1.46930 * 108.54483 * 54.85709 * 6 5 4 8 8 C 1.34771 * 120.63401 * 126.37015 * 7 6 5 9 9 O 1.21580 * 119.99930 * 164.64015 * 8 7 6 10 10 N 1.34775 * 120.00003 * 344.35932 * 8 7 6 11 11 C 1.46502 * 120.00035 * 344.22854 * 10 8 7 12 12 C 1.37192 * 119.99834 * 164.22924 * 10 8 7 13 13 H 1.07994 * 120.00573 * 21.43139 * 12 10 8 14 14 C 1.38878 * 119.99731 * 201.43712 * 12 10 8 15 15 N 1.31477 * 120.00353 * 10.81474 * 14 12 10 16 16 Si 1.86800 * 119.99927 * 190.81353 * 14 12 10 17 17 H 1.48505 * 109.46840 * 94.98844 * 16 14 12 18 18 H 1.48495 * 109.47275 * 214.98589 * 16 14 12 19 19 H 1.48495 * 109.47219 * 334.98895 * 16 14 12 20 20 C 1.46929 * 118.73061 * 306.08885 * 7 6 5 21 21 H 1.09004 * 109.46979 * 180.08275 * 1 2 3 22 22 H 1.08999 * 109.47779 * 300.08647 * 1 2 3 23 23 H 1.09006 * 109.46814 * 60.08481 * 1 2 3 24 24 H 1.09004 * 109.46291 * 301.34021 * 4 2 1 25 25 H 1.09005 * 109.45727 * 61.30022 * 4 2 1 26 26 H 1.09005 * 109.49506 * 58.58460 * 5 4 2 27 27 H 1.08991 * 109.50038 * 178.65090 * 5 4 2 28 28 H 1.08999 * 109.74115 * 295.11245 * 6 5 4 29 29 H 1.09006 * 109.66546 * 174.54406 * 6 5 4 30 30 H 1.08997 * 109.46829 * 97.59302 * 11 10 8 31 31 H 1.08996 * 109.46966 * 217.59149 * 11 10 8 32 32 H 1.08997 * 109.47204 * 337.59457 * 11 10 8 33 33 H 0.96997 * 120.00569 * 180.02562 * 15 14 12 34 34 H 1.09007 * 109.58265 * 173.64816 * 20 7 6 35 35 H 1.08997 * 109.59116 * 293.92828 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7230 1.2484 5 6 3.5707 -0.6950 1.2662 6 6 4.1050 -1.4319 0.0286 7 7 3.5047 -0.8292 -1.1694 8 6 4.2812 -0.3866 -2.1781 9 8 3.7902 -0.1518 -3.2653 10 7 5.6010 -0.1989 -1.9801 11 6 6.1356 -0.1361 -0.6175 12 6 6.4439 -0.0666 -3.0544 13 1 6.0514 0.2321 -4.0152 14 6 7.8018 -0.3170 -2.9066 15 7 8.2504 -0.8815 -1.8071 16 14 8.9912 0.1482 -4.2698 17 1 9.5683 1.4871 -3.9876 18 1 10.0825 -0.8565 -4.3389 19 1 8.2685 0.1840 -5.5665 20 6 2.0413 -0.7239 -1.2494 21 1 -0.3633 -1.0277 0.0015 22 1 -0.3634 0.5151 0.8892 23 1 -0.3633 0.5126 -0.8908 24 1 1.6580 -0.2243 2.1390 25 1 1.6966 -1.7572 1.2354 26 1 3.9158 0.3389 1.2542 27 1 3.9332 -1.1890 2.1676 28 1 3.8338 -2.4862 0.0823 29 1 5.1896 -1.3333 -0.0173 30 1 6.5381 -1.1103 -0.3399 31 1 6.9282 0.6108 -0.5723 32 1 5.3383 0.1379 0.0734 33 1 9.1989 -1.0561 -1.7037 34 1 1.7638 -0.1580 -2.1388 35 1 1.6054 -1.7216 -1.3005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085966184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:56 Heat of formation + Delta-G solvation = -7.304903 kcal Electronic energy + Delta-G solvation = -16712.814650 eV Core-core repulsion = 14132.814247 eV Total energy + Delta-G solvation = -2580.000404 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.50809 -38.63234 -36.98199 -34.81017 -33.15742 -32.64648 -28.90850 -27.43527 -26.98133 -24.85017 -23.06783 -21.68229 -20.27949 -19.07232 -18.12040 -17.13364 -16.55176 -16.14029 -15.87090 -15.34158 -15.11576 -14.95774 -14.69296 -14.06831 -13.78063 -13.42808 -13.09646 -13.06038 -12.86717 -12.61102 -12.40019 -12.11971 -12.08895 -11.95615 -11.65204 -11.40655 -11.21640 -10.90869 -10.49900 -9.75124 -9.29001 -8.24653 -5.89645 1.40984 1.41730 1.54574 2.08190 2.31597 2.46887 3.13273 3.50699 3.84029 3.95213 3.96650 4.16834 4.37738 4.40875 4.51084 4.69640 4.75524 4.85763 4.92581 4.95874 4.97680 5.07021 5.12738 5.25955 5.28409 5.32262 5.37357 5.49363 5.54359 5.73524 6.05734 6.40683 6.79649 7.24956 7.62550 8.15678 8.77855 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.050388 B = 0.007743 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.553471 B = 3615.198010 C = 4027.251504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 H 0.054 0.946 4 C -0.104 4.104 5 C -0.129 4.129 6 C 0.053 3.947 7 N -0.634 5.634 8 C 0.659 3.341 9 O -0.667 6.667 10 N -0.495 5.495 11 C 0.126 3.874 12 C -0.329 4.329 13 H 0.067 0.933 14 C -0.008 4.008 15 N -0.907 5.907 16 Si 0.992 3.008 17 H -0.268 1.268 18 H -0.272 1.272 19 H -0.278 1.278 20 C 0.135 3.865 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.050 0.950 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.118 0.882 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.271 0.729 34 H 0.054 0.946 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 -0.551 10.691 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 H 0.073 0.927 4 C -0.142 4.142 5 C -0.167 4.167 6 C -0.069 4.069 7 N -0.373 5.373 8 C 0.362 3.638 9 O -0.553 6.553 10 N -0.220 5.220 11 C -0.016 4.016 12 C -0.457 4.457 13 H 0.085 0.915 14 C -0.208 4.208 15 N -0.547 5.547 16 Si 0.816 3.184 17 H -0.194 1.194 18 H -0.197 1.197 19 H -0.203 1.203 20 C 0.012 3.988 21 H 0.085 0.915 22 H 0.093 0.907 23 H 0.069 0.931 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.136 0.864 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.908 -0.486 10.210 13.558 hybrid contribution 0.772 0.154 -0.964 1.244 sum -8.136 -0.332 9.246 12.320 Atomic orbital electron populations 1.21712 0.92602 1.02729 1.02372 1.21509 0.97187 0.98903 0.94693 0.92721 1.21539 0.94389 1.01161 0.97073 1.22014 0.96897 1.00525 0.97284 1.23193 1.02838 0.96627 0.84200 1.47227 1.06131 1.64562 1.19336 1.16398 0.82407 0.81281 0.83665 1.90638 1.74299 1.63352 1.27057 1.42897 1.03983 1.68047 1.07065 1.21844 0.96851 1.00835 0.82044 1.19498 0.89272 1.45971 0.90966 0.91483 1.25999 0.98538 0.95812 1.00433 1.70068 1.15506 1.41368 1.27748 0.84936 0.77378 0.78328 0.77758 1.19374 1.19716 1.20318 1.21496 0.78479 1.00272 0.98591 0.91531 0.90707 0.93113 0.89697 0.90934 0.92472 0.88359 0.92058 0.86439 0.91845 0.94294 0.90891 0.91966 0.92728 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.20 71.98 0.66 -1.96 16 2 C -0.10 -2.64 2.87 -10.72 -0.03 -2.67 16 3 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.10 -2.18 5.16 30.62 0.16 -2.02 16 5 C -0.13 -3.16 5.66 30.82 0.17 -2.98 16 6 C 0.05 1.76 5.43 86.51 0.47 2.23 16 7 N -0.63 -26.36 2.89 -836.06 -2.41 -28.78 16 8 C 0.66 35.61 7.87 179.06 1.41 37.02 16 9 O -0.67 -41.31 15.63 -3.97 -0.06 -41.37 16 10 N -0.50 -27.36 3.01 -775.68 -2.34 -29.70 16 11 C 0.13 5.82 6.73 127.77 0.86 6.67 16 12 C -0.33 -19.72 9.39 84.01 0.79 -18.93 16 13 H 0.07 4.32 7.34 -2.91 -0.02 4.30 16 14 C -0.01 -0.42 5.17 84.90 0.44 0.02 16 15 N -0.91 -49.01 10.49 21.65 0.23 -48.78 16 16 Si 0.99 44.21 29.57 68.60 2.03 46.23 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 C 0.13 4.66 5.66 86.36 0.49 5.15 16 21 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.06 1.52 7.05 -2.38 -0.02 1.50 16 27 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.12 4.44 2.64 -38.69 -0.10 4.33 16 30 H 0.06 2.99 6.00 -2.39 -0.01 2.98 16 31 H 0.04 1.90 7.34 -2.39 -0.02 1.89 16 32 H 0.07 2.83 4.02 -2.39 -0.01 2.82 16 33 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 34 H 0.05 2.19 7.16 -2.38 -0.02 2.17 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -70.92 269.19 3.84 -67.08 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.98 Total: 12.79 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: 5.42 Total: 22.52 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -4.52 Total: -107.26 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.06 Total: -41.37 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -70.92 3.84 -67.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085966184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.774 kcal (2) G-P(sol) polarization free energy of solvation -70.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds