Wall clock time and date at job start Mon Mar 30 2020 04:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.90600 * 2 1 4 4 N 1.47897 * 109.91673 * 238.69303 * 2 1 3 5 5 C 1.48739 * 105.94030 * 215.44288 * 4 2 1 6 6 C 1.54934 * 103.13576 * 38.96113 * 5 4 2 7 7 C 1.53990 * 109.91860 * 121.09990 * 2 1 3 8 8 H 1.09006 * 110.39265 * 239.53836 * 7 2 1 9 9 C 1.50703 * 110.31128 * 1.65994 * 7 2 1 10 10 O 1.21284 * 119.99428 * 88.98513 * 9 7 2 11 11 N 1.34767 * 120.00339 * 268.98783 * 9 7 2 12 12 C 1.46498 * 120.00041 * 4.88664 * 11 9 7 13 13 C 1.46503 * 120.00194 * 184.88638 * 11 9 7 14 14 C 1.50699 * 109.47312 * 89.99959 * 13 11 9 15 15 H 1.08001 * 119.99591 * 359.97438 * 14 13 11 16 16 C 1.37877 * 120.00090 * 180.02562 * 14 13 11 17 17 N 1.31515 * 120.00067 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99903 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47413 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47470 * 119.99496 * 18 16 14 21 21 H 1.48500 * 109.47168 * 239.99380 * 18 16 14 22 22 H 1.09007 * 109.46757 * 297.08360 * 1 2 3 23 23 H 1.08993 * 109.47209 * 57.08055 * 1 2 3 24 24 H 1.09001 * 109.46494 * 177.08416 * 1 2 3 25 25 H 1.00901 * 111.00398 * 94.80223 * 4 2 1 26 26 H 1.09002 * 110.58387 * 280.61199 * 5 4 2 27 27 H 1.09006 * 110.83152 * 157.42501 * 5 4 2 28 28 H 1.08999 * 110.72360 * 204.37720 * 6 5 4 29 29 H 1.08999 * 110.72471 * 81.26479 * 6 5 4 30 30 H 1.09000 * 109.47660 * 84.85196 * 12 11 9 31 31 H 1.09002 * 109.47232 * 204.85473 * 12 11 9 32 32 H 1.09000 * 109.47015 * 324.85145 * 12 11 9 33 33 H 1.09002 * 109.47469 * 210.00082 * 13 11 9 34 34 H 1.09001 * 109.46977 * 330.00027 * 13 11 9 35 35 H 0.96994 * 120.00463 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 7 2.0339 -0.7225 -1.1880 5 6 3.2685 -1.4245 -0.7461 6 6 2.9060 -1.9104 0.6797 7 6 2.0547 -0.7478 1.2397 8 1 2.6711 -0.0870 1.8493 9 6 0.9047 -1.2855 2.0518 10 8 0.4586 -2.3882 1.8151 11 7 0.3719 -0.5411 3.0409 12 6 0.8379 0.8308 3.2574 13 6 -0.6732 -1.1038 3.8996 14 6 -0.0379 -1.7756 5.0896 15 1 1.0369 -1.7830 5.1954 16 6 -0.8287 -2.3816 6.0427 17 7 -2.1375 -2.3729 5.9136 18 14 -0.0413 -3.2137 7.5181 19 1 1.4354 -3.0842 7.4298 20 1 -0.5214 -2.5671 8.7658 21 1 -0.4118 -4.6516 7.5316 22 1 -0.3633 0.4679 0.9151 23 1 -0.3633 0.5585 -0.8626 24 1 -0.3632 -1.0264 -0.0523 25 1 2.2312 -0.0833 -1.9434 26 1 4.1114 -0.7341 -0.7146 27 1 3.4873 -2.2710 -1.3971 28 1 3.8054 -2.0533 1.2787 29 1 2.3224 -2.8301 0.6370 30 1 0.2968 1.5071 2.5957 31 1 0.6587 1.1161 4.2940 32 1 1.9051 0.8900 3.0436 33 1 -1.3314 -0.3052 4.2418 34 1 -1.2521 -1.8352 3.3357 35 1 -2.6939 -2.7989 6.5842 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086270757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:44 Heat of formation + Delta-G solvation = -31.144489 kcal Electronic energy + Delta-G solvation = -16440.361615 eV Core-core repulsion = 13859.327449 eV Total energy + Delta-G solvation = -2581.034166 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.95356 -37.26193 -34.76349 -32.64487 -31.14091 -30.46028 -27.72732 -25.97243 -25.39498 -23.12139 -21.13744 -20.57024 -17.78110 -17.17567 -16.46016 -16.13271 -15.30612 -14.75479 -14.47429 -14.14393 -13.63595 -12.86391 -12.72463 -12.25696 -12.19172 -11.92107 -11.88393 -11.65001 -11.59993 -11.18268 -11.05707 -10.86970 -10.67417 -10.58173 -10.41910 -10.14119 -9.58443 -8.80968 -8.51062 -8.42816 -7.58672 -6.03304 -4.08252 3.29901 3.37048 3.40176 3.47264 3.99692 4.19478 4.45161 4.77378 4.81196 5.09111 5.22418 5.30233 5.36033 5.48273 5.53897 5.74718 5.77745 5.84483 5.90985 5.95487 6.11227 6.19811 6.24321 6.45252 6.60625 6.85597 7.10017 7.34418 7.48767 7.58773 7.93893 8.25332 8.47086 8.92420 9.16211 9.57169 11.04709 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.042388 B = 0.007196 C = 0.006802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.401574 B = 3890.278100 C = 4115.191034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.088 3.912 3 H 0.051 0.949 4 N -0.666 5.666 5 C 0.041 3.959 6 C -0.113 4.113 7 C -0.124 4.124 8 H 0.090 0.910 9 C 0.524 3.476 10 O -0.537 6.537 11 N -0.604 5.604 12 C 0.082 3.918 13 C 0.245 3.755 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.282 1.282 22 H 0.064 0.936 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.334 0.666 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.045 0.955 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.473 7.770 -10.233 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 H 0.069 0.931 4 N -0.295 5.295 5 C -0.088 4.088 6 C -0.151 4.151 7 C -0.146 4.146 8 H 0.108 0.892 9 C 0.310 3.690 10 O -0.414 6.414 11 N -0.336 5.336 12 C -0.062 4.062 13 C 0.125 3.875 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.149 0.851 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.580 6.560 -10.205 14.859 hybrid contribution 1.088 0.474 1.078 1.604 sum 9.668 7.034 -9.127 15.042 Atomic orbital electron populations 1.21978 0.93621 1.03784 1.01378 1.21965 0.96743 0.94716 0.88823 0.93127 1.62989 1.28309 1.30567 1.07651 1.23041 0.90873 0.98155 0.96690 1.22499 0.99101 0.99276 0.94263 1.22340 0.97071 0.98687 0.96525 0.89210 1.19826 0.83726 0.85301 0.80160 1.90645 1.61970 1.20555 1.68272 1.48143 1.40323 1.12983 1.32152 1.21669 0.98368 0.83905 1.02230 1.19286 0.85310 0.94389 0.88475 1.21494 0.93425 1.35535 1.06102 0.92479 1.24943 0.94795 0.96051 0.98363 1.69942 1.03445 1.44488 1.35468 0.86448 0.79425 0.79373 0.82208 1.19844 1.20954 1.20851 0.91678 0.92947 0.90745 0.85088 0.94383 0.89964 0.91139 0.88579 0.93808 0.90677 0.92687 0.95116 0.93714 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.37 37.16 0.31 -2.01 16 2 C 0.09 1.20 3.91 -66.65 -0.26 0.94 16 3 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 4 N -0.67 -8.52 7.14 -102.97 -0.74 -9.25 16 5 C 0.04 0.49 7.57 -1.78 -0.01 0.48 16 6 C -0.11 -1.69 6.54 -24.87 -0.16 -1.85 16 7 C -0.12 -1.96 2.71 -90.41 -0.24 -2.21 16 8 H 0.09 1.24 6.10 -51.93 -0.32 0.93 16 9 C 0.52 11.09 4.62 -10.99 -0.05 11.04 16 10 O -0.54 -13.79 14.63 5.55 0.08 -13.71 16 11 N -0.60 -12.94 2.38 -182.95 -0.44 -13.38 16 12 C 0.08 1.32 9.82 59.85 0.59 1.91 16 13 C 0.24 6.49 5.17 -5.19 -0.03 6.46 16 14 C -0.53 -15.11 9.39 -34.44 -0.32 -15.44 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 18 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H 0.06 1.05 5.67 -51.93 -0.29 0.75 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 1.41 7.14 -51.93 -0.37 1.04 16 25 H 0.33 3.36 8.92 -39.29 -0.35 3.00 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.10 1.74 6.85 -51.93 -0.36 1.38 16 30 H 0.04 0.60 7.21 -51.93 -0.37 0.23 16 31 H 0.07 1.23 8.03 -51.93 -0.42 0.82 16 32 H 0.05 0.74 5.97 -51.93 -0.31 0.43 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.34 7.36 -51.93 -0.38 0.96 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 280.02 15.07 4.22 4.22 Total: -1.00 -33.09 280.02 -6.69 -39.77 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.25 Total: 0.50 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -0.28 Total: 0.97 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.43 Total: -48.76 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.08 Total: -13.71 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.09 -6.69 -39.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086270757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.630 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds