Wall clock time and date at job start Mon Mar 30 2020 04:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.90600 * 2 1 4 4 N 1.47897 * 109.91673 * 238.69303 * 2 1 3 5 5 C 1.48739 * 105.94030 * 215.44288 * 4 2 1 6 6 C 1.54934 * 103.13576 * 38.96113 * 5 4 2 7 7 C 1.53990 * 109.91860 * 121.09990 * 2 1 3 8 8 H 1.09006 * 110.39265 * 239.53836 * 7 2 1 9 9 C 1.50703 * 110.31128 * 1.65994 * 7 2 1 10 10 O 1.21284 * 119.99428 * 88.98513 * 9 7 2 11 11 N 1.34767 * 120.00339 * 268.98783 * 9 7 2 12 12 C 1.46498 * 120.00041 * 4.88664 * 11 9 7 13 13 C 1.46503 * 120.00194 * 184.88638 * 11 9 7 14 14 C 1.50699 * 109.47312 * 89.99959 * 13 11 9 15 15 H 1.08001 * 119.99591 * 359.97438 * 14 13 11 16 16 C 1.37877 * 120.00090 * 180.02562 * 14 13 11 17 17 N 1.31515 * 120.00067 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99903 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47413 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47470 * 119.99496 * 18 16 14 21 21 H 1.48500 * 109.47168 * 239.99380 * 18 16 14 22 22 H 1.09007 * 109.46757 * 297.08360 * 1 2 3 23 23 H 1.08993 * 109.47209 * 57.08055 * 1 2 3 24 24 H 1.09001 * 109.46494 * 177.08416 * 1 2 3 25 25 H 1.00901 * 111.00398 * 94.80223 * 4 2 1 26 26 H 1.09002 * 110.58387 * 280.61199 * 5 4 2 27 27 H 1.09006 * 110.83152 * 157.42501 * 5 4 2 28 28 H 1.08999 * 110.72360 * 204.37720 * 6 5 4 29 29 H 1.08999 * 110.72471 * 81.26479 * 6 5 4 30 30 H 1.09000 * 109.47660 * 84.85196 * 12 11 9 31 31 H 1.09002 * 109.47232 * 204.85473 * 12 11 9 32 32 H 1.09000 * 109.47015 * 324.85145 * 12 11 9 33 33 H 1.09002 * 109.47469 * 210.00082 * 13 11 9 34 34 H 1.09001 * 109.46977 * 330.00027 * 13 11 9 35 35 H 0.96994 * 120.00463 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 7 2.0339 -0.7225 -1.1880 5 6 3.2685 -1.4245 -0.7461 6 6 2.9060 -1.9104 0.6797 7 6 2.0547 -0.7478 1.2397 8 1 2.6711 -0.0870 1.8493 9 6 0.9047 -1.2855 2.0518 10 8 0.4586 -2.3882 1.8151 11 7 0.3719 -0.5411 3.0409 12 6 0.8379 0.8308 3.2574 13 6 -0.6732 -1.1038 3.8996 14 6 -0.0379 -1.7756 5.0896 15 1 1.0369 -1.7830 5.1954 16 6 -0.8287 -2.3816 6.0427 17 7 -2.1375 -2.3729 5.9136 18 14 -0.0413 -3.2137 7.5181 19 1 1.4354 -3.0842 7.4298 20 1 -0.5214 -2.5671 8.7658 21 1 -0.4118 -4.6516 7.5316 22 1 -0.3633 0.4679 0.9151 23 1 -0.3633 0.5585 -0.8626 24 1 -0.3632 -1.0264 -0.0523 25 1 2.2312 -0.0833 -1.9434 26 1 4.1114 -0.7341 -0.7146 27 1 3.4873 -2.2710 -1.3971 28 1 3.8054 -2.0533 1.2787 29 1 2.3224 -2.8301 0.6370 30 1 0.2968 1.5071 2.5957 31 1 0.6587 1.1161 4.2940 32 1 1.9051 0.8900 3.0436 33 1 -1.3314 -0.3052 4.2418 34 1 -1.2521 -1.8352 3.3357 35 1 -2.6939 -2.7989 6.5842 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086270757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:43 Heat of formation + Delta-G solvation = -56.115617 kcal Electronic energy + Delta-G solvation = -16441.444444 eV Core-core repulsion = 13859.327449 eV Total energy + Delta-G solvation = -2582.116995 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.40160 -38.61328 -36.57151 -34.75827 -32.31921 -31.73407 -29.61998 -27.39880 -26.79363 -25.01969 -22.22787 -22.01177 -19.30097 -18.74093 -18.30631 -17.47217 -17.07825 -16.40778 -16.03049 -15.51338 -14.94855 -14.50583 -14.13783 -13.80812 -13.55188 -13.45445 -13.38240 -13.09474 -12.96121 -12.84968 -12.68385 -12.51667 -12.22672 -12.18404 -11.83339 -11.74059 -11.56421 -10.66713 -10.51893 -9.43251 -9.38435 -8.23849 -6.39574 1.34958 1.37649 1.49455 1.85613 2.31489 2.45879 3.05268 3.21815 3.55581 3.65509 3.93550 4.11674 4.25035 4.38839 4.49642 4.52519 4.63472 4.67170 4.73890 4.88704 4.94929 4.99713 5.04405 5.07131 5.22468 5.26819 5.35120 5.55895 5.83398 5.87374 6.05184 6.56362 6.69240 6.81458 7.27240 7.52589 8.83407 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.042388 B = 0.007196 C = 0.006802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.401574 B = 3890.278100 C = 4115.191034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.094 3.906 3 H 0.094 0.906 4 N -0.684 5.684 5 C 0.052 3.948 6 C -0.120 4.120 7 C -0.118 4.118 8 H 0.121 0.879 9 C 0.515 3.485 10 O -0.597 6.597 11 N -0.610 5.610 12 C 0.076 3.924 13 C 0.260 3.740 14 C -0.544 4.544 15 H 0.054 0.946 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.970 3.030 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.282 1.282 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.026 0.974 25 H 0.353 0.647 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.022 0.978 34 H -0.006 1.006 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.143 9.620 -10.481 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.016 4.016 3 H 0.111 0.889 4 N -0.316 5.316 5 C -0.076 4.076 6 C -0.158 4.158 7 C -0.139 4.139 8 H 0.139 0.861 9 C 0.304 3.696 10 O -0.479 6.479 11 N -0.341 5.341 12 C -0.066 4.066 13 C 0.138 3.862 14 C -0.582 4.582 15 H 0.072 0.928 16 C -0.193 4.193 17 N -0.569 5.569 18 Si 0.794 3.206 19 H -0.190 1.190 20 H -0.192 1.192 21 H -0.208 1.208 22 H 0.073 0.927 23 H 0.094 0.906 24 H 0.045 0.955 25 H 0.171 0.829 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.040 0.960 34 H 0.012 0.988 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.280 8.467 -10.472 17.567 hybrid contribution 0.200 -0.101 1.104 1.127 sum 11.480 8.367 -9.367 17.016 Atomic orbital electron populations 1.21919 0.95665 1.00943 1.01898 1.21954 0.95065 0.96519 0.88060 0.88869 1.62867 1.29347 1.31439 1.07962 1.23017 0.91366 0.98962 0.94264 1.22531 0.98956 0.97270 0.97081 1.22420 0.94912 0.99632 0.96969 0.86075 1.20862 0.84402 0.84463 0.79831 1.90613 1.63982 1.23386 1.69872 1.48155 1.39306 1.15168 1.31502 1.21978 1.00858 0.81040 1.02696 1.18724 0.86337 0.93002 0.88107 1.21763 0.93347 1.36179 1.06961 0.92759 1.25906 0.95316 0.96533 1.01575 1.70065 1.04947 1.45217 1.36714 0.85333 0.78743 0.77960 0.78565 1.18970 1.19247 1.20800 0.92722 0.90597 0.95457 0.82897 0.90891 0.89404 0.89360 0.92921 0.91079 0.91316 0.89056 0.96018 0.98762 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 8.37 71.98 0.60 -3.82 16 2 C 0.09 2.29 3.91 45.06 0.18 2.47 16 3 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 4 N -0.68 -15.47 7.14 -479.70 -3.43 -18.90 16 5 C 0.05 1.06 7.57 86.61 0.66 1.72 16 6 C -0.12 -3.40 6.54 31.80 0.21 -3.20 16 7 C -0.12 -3.47 2.71 -10.66 -0.03 -3.50 16 8 H 0.12 2.80 6.10 -2.38 -0.01 2.78 16 9 C 0.52 22.24 4.62 87.66 0.41 22.64 16 10 O -0.60 -32.66 14.63 -3.04 -0.04 -32.71 16 11 N -0.61 -26.50 2.38 -851.13 -2.03 -28.53 16 12 C 0.08 2.29 9.82 127.77 1.26 3.54 16 13 C 0.26 14.46 5.17 85.63 0.44 14.91 16 14 C -0.54 -32.04 9.39 25.60 0.24 -31.80 16 15 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 16 C 0.01 0.32 5.46 84.65 0.46 0.78 16 17 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 18 Si 0.97 45.51 29.54 68.60 2.03 47.53 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 22 H 0.05 1.73 5.67 -2.38 -0.01 1.71 16 23 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.03 1.06 7.14 -2.39 -0.02 1.04 16 25 H 0.35 5.65 8.92 -89.69 -0.80 4.85 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 1.97 6.85 -2.39 -0.02 1.95 16 30 H 0.07 1.76 7.21 -2.39 -0.02 1.74 16 31 H 0.07 2.15 8.03 -2.39 -0.02 2.14 16 32 H 0.09 2.07 5.97 -2.39 -0.01 2.06 16 33 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 34 H -0.01 -0.37 7.36 -2.39 -0.02 -0.39 16 35 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -77.29 280.02 1.51 -75.78 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.28 Total: 10.21 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 4.42 Total: 3.75 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -5.17 Total: -104.56 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.04 Total: -32.71 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -77.29 1.51 -75.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086270757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.661 kcal (2) G-P(sol) polarization free energy of solvation -77.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds