Wall clock time and date at job start Mon Mar 30 2020 03:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 111.00140 * 2 1 4 4 H 1.08996 * 109.52464 * 324.91649 * 3 2 1 5 5 C 1.53190 * 109.49634 * 84.99886 * 3 2 1 6 6 N 1.46928 * 108.77311 * 174.58625 * 5 3 2 7 7 C 1.34776 * 120.63003 * 126.36540 * 6 5 3 8 8 O 1.21693 * 120.00101 * 354.81675 * 7 6 5 9 9 C 1.46371 * 120.00180 * 175.08971 * 7 6 5 10 10 H 1.08005 * 120.00120 * 342.17675 * 9 7 6 11 11 C 1.40051 * 120.00233 * 162.17666 * 9 7 6 12 12 N 1.30673 * 120.00193 * 170.24656 * 11 9 7 13 13 Si 1.86796 * 120.00061 * 350.24449 * 11 9 7 14 14 H 1.48507 * 109.46850 * 84.76813 * 13 11 9 15 15 H 1.48492 * 109.47438 * 204.76801 * 13 11 9 16 16 H 1.48503 * 109.47252 * 324.77026 * 13 11 9 17 17 C 1.46926 * 118.74010 * 306.64237 * 6 5 3 18 18 C 1.52755 * 109.00604 * 53.30874 * 17 6 5 19 19 C 1.53040 * 109.38660 * 305.58802 * 18 17 6 20 20 H 1.08995 * 109.45063 * 181.25756 * 19 18 17 21 21 C 1.53002 * 109.45981 * 301.22179 * 19 18 17 22 22 H 1.09004 * 109.46798 * 60.00192 * 1 2 3 23 23 H 1.08998 * 109.47299 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47104 * 300.00565 * 1 2 3 25 25 H 1.00903 * 110.99771 * 123.94870 * 2 1 3 26 26 H 1.08997 * 109.58947 * 54.80013 * 5 3 2 27 27 H 1.09001 * 109.70310 * 294.43848 * 5 3 2 28 28 H 0.96991 * 120.00198 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.58804 * 173.14547 * 17 6 5 30 30 H 1.09001 * 109.58623 * 293.56953 * 17 6 5 31 31 H 1.09002 * 109.56434 * 185.55290 * 18 17 6 32 32 H 1.09005 * 109.36301 * 65.50390 * 18 17 6 33 33 H 1.08993 * 109.46999 * 180.02562 * 21 19 18 34 34 H 1.09000 * 109.46892 * 300.06808 * 21 19 18 35 35 H 1.09003 * 109.46872 * 60.06343 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3412 2.0128 -0.5905 5 6 2.0612 1.8939 1.4386 6 7 2.7090 3.2126 1.4336 7 6 2.1074 4.2754 2.0037 8 8 0.9783 4.1709 2.4454 9 6 2.8099 5.5568 2.0864 10 1 3.8825 5.5935 1.9653 11 6 2.0912 6.7355 2.3226 12 7 2.7266 7.8466 2.5858 13 14 0.2243 6.7192 2.2613 14 1 -0.3104 6.2917 3.5792 15 1 -0.2724 8.0821 1.9440 16 1 -0.2283 5.7707 1.2122 17 6 4.0224 3.3521 0.7899 18 6 3.9372 2.8121 -0.6365 19 6 3.4008 1.3791 -0.6059 20 1 3.3606 0.9849 -1.6213 21 6 4.3269 0.5062 0.2434 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8306 -0.5261 0.7814 26 1 2.6412 1.2042 2.0517 27 1 1.0531 1.9836 1.8434 28 1 2.2289 8.6629 2.7490 29 1 4.3070 4.4040 0.7645 30 1 4.7656 2.7837 1.3490 31 1 4.9285 2.8199 -1.0896 32 1 3.2646 3.4399 -1.2211 33 1 3.9453 -0.5145 0.2649 34 1 5.3279 0.5116 -0.1880 35 1 4.3669 0.9001 1.2590 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117301226.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:21 Heat of formation + Delta-G solvation = -48.948265 kcal Electronic energy + Delta-G solvation = -16638.099861 eV Core-core repulsion = 14056.293666 eV Total energy + Delta-G solvation = -2581.806195 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.52525 -37.04395 -34.76859 -32.86665 -32.43120 -29.67523 -27.47618 -26.43685 -24.60135 -23.90625 -21.90548 -19.87100 -18.32084 -16.61747 -16.22076 -15.66313 -15.05116 -14.66579 -14.37798 -13.86020 -13.80766 -13.61187 -12.85069 -12.55852 -12.39203 -12.24307 -11.89642 -11.72866 -11.59334 -11.20693 -10.96298 -10.86178 -10.61565 -10.31916 -10.15543 -10.14290 -9.46284 -9.02771 -8.47019 -7.95513 -7.44616 -6.63678 -4.83819 3.42985 3.45888 3.67818 4.07666 4.18981 4.41851 4.57418 5.04049 5.10341 5.27788 5.39059 5.46504 5.54083 5.58935 5.64524 5.77422 5.86015 5.92442 5.97122 6.12730 6.16704 6.23595 6.25518 6.39276 6.50099 6.61359 6.71589 7.02730 7.12388 7.43037 7.65255 7.86835 8.31037 8.70638 9.12893 10.02062 10.37580 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.033471 B = 0.009313 C = 0.007817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.353440 B = 3005.766018 C = 3581.201888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.685 5.685 3 C 0.076 3.924 4 H 0.078 0.922 5 C 0.093 3.907 6 N -0.627 5.627 7 C 0.555 3.445 8 O -0.619 6.619 9 C -0.533 4.533 10 H 0.091 0.909 11 C 0.103 3.897 12 N -0.828 5.828 13 Si 0.963 3.037 14 H -0.277 1.277 15 H -0.319 1.319 16 H -0.269 1.269 17 C 0.119 3.881 18 C -0.132 4.132 19 C -0.075 4.075 20 H 0.070 0.930 21 C -0.148 4.148 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.026 0.974 25 H 0.338 0.662 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.282 0.718 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.651 -12.030 -5.971 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.315 5.315 3 C -0.035 4.035 4 H 0.096 0.904 5 C -0.032 4.032 6 N -0.362 5.362 7 C 0.364 3.636 8 O -0.511 6.511 9 C -0.569 4.569 10 H 0.109 0.891 11 C -0.115 4.115 12 N -0.458 5.458 13 Si 0.795 3.205 14 H -0.203 1.203 15 H -0.250 1.250 16 H -0.194 1.194 17 C -0.005 4.005 18 C -0.171 4.171 19 C -0.094 4.094 20 H 0.088 0.912 21 C -0.206 4.206 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.045 0.955 25 H 0.155 0.845 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.186 -11.976 -6.384 13.623 hybrid contribution -0.838 0.314 0.900 1.269 sum 0.348 -11.662 -5.483 12.892 Atomic orbital electron populations 1.22218 0.88115 1.01274 1.00849 1.60647 1.07587 1.13904 1.49358 1.22017 0.96367 0.88578 0.96560 0.90392 1.21942 0.99315 0.86131 0.95852 1.47632 1.20234 1.07975 1.60311 1.18378 0.84620 0.83993 0.76595 1.90214 1.21676 1.83217 1.55996 1.20746 0.96427 0.89152 1.50556 0.89115 1.25723 1.02352 0.94209 0.89181 1.69557 1.39230 1.00820 1.36195 0.85303 0.81241 0.73213 0.80709 1.20300 1.25011 1.19408 1.21443 0.85049 1.02749 0.91240 1.21930 1.01026 0.95783 0.98317 1.21020 0.93691 0.95342 0.99378 0.91180 1.21891 0.98762 0.99521 1.00388 0.91864 0.91813 0.95539 0.84455 0.93423 0.90142 0.90808 0.88425 0.93386 0.91306 0.91677 0.92607 0.93096 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.50 60.06 0.63 0.94 16 2 N -0.69 -9.04 6.17 -113.88 -0.70 -9.74 16 3 C 0.08 1.18 2.32 -67.59 -0.16 1.02 16 4 H 0.08 1.37 7.80 -51.93 -0.41 0.97 16 5 C 0.09 1.72 5.23 -3.71 -0.02 1.70 16 6 N -0.63 -13.59 2.98 -174.70 -0.52 -14.11 16 7 C 0.55 14.91 7.21 -12.99 -0.09 14.81 16 8 O -0.62 -18.17 12.12 5.19 0.06 -18.10 16 9 C -0.53 -15.03 9.08 -35.63 -0.32 -15.35 16 10 H 0.09 2.53 6.43 -52.48 -0.34 2.20 16 11 C 0.10 2.95 5.52 -17.37 -0.10 2.86 16 12 N -0.83 -23.55 13.92 55.55 0.77 -22.77 16 13 Si 0.96 25.60 25.83 -169.99 -4.39 21.21 16 14 H -0.28 -7.61 7.11 56.52 0.40 -7.21 16 15 H -0.32 -7.99 7.11 56.52 0.40 -7.59 16 16 H -0.27 -7.46 6.82 56.52 0.39 -7.07 16 17 C 0.12 2.15 5.79 -3.94 -0.02 2.13 16 18 C -0.13 -1.97 5.61 -26.84 -0.15 -2.12 16 19 C -0.08 -1.04 2.90 -90.58 -0.26 -1.31 16 20 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.15 -1.82 8.19 37.16 0.30 -1.52 16 22 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.03 0.36 7.56 -51.93 -0.39 -0.03 16 25 H 0.34 4.06 7.76 -39.29 -0.30 3.75 16 26 H 0.05 0.80 6.59 -51.93 -0.34 0.46 16 27 H 0.08 1.68 6.47 -51.93 -0.34 1.35 16 28 H 0.28 7.38 8.29 -40.82 -0.34 7.04 16 29 H 0.10 1.94 5.61 -51.93 -0.29 1.65 16 30 H 0.05 0.79 6.70 -51.93 -0.35 0.44 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.63 7.23 -51.93 -0.38 0.26 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.78 4.99 -51.93 -0.26 0.52 16 LS Contribution 268.57 15.07 4.05 4.05 Total: -1.00 -31.22 268.57 -5.99 -37.21 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.07 Total: -0.92 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.19 Total: 3.17 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.45 Total: -46.62 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.06 Total: -18.10 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -4.39 Total: 21.21 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.22 -5.99 -37.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117301226.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.736 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds