Wall clock time and date at job start Mon Mar 30 2020 03:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 111.00140 * 2 1 4 4 H 1.08996 * 109.52464 * 324.91649 * 3 2 1 5 5 C 1.53190 * 109.49634 * 84.99886 * 3 2 1 6 6 N 1.46928 * 108.77311 * 174.58625 * 5 3 2 7 7 C 1.34776 * 120.63003 * 126.36540 * 6 5 3 8 8 O 1.21693 * 120.00101 * 354.81675 * 7 6 5 9 9 C 1.46371 * 120.00180 * 175.08971 * 7 6 5 10 10 H 1.08005 * 120.00120 * 342.17675 * 9 7 6 11 11 C 1.40051 * 120.00233 * 162.17666 * 9 7 6 12 12 N 1.30673 * 120.00193 * 170.24656 * 11 9 7 13 13 Si 1.86796 * 120.00061 * 350.24449 * 11 9 7 14 14 H 1.48507 * 109.46850 * 84.76813 * 13 11 9 15 15 H 1.48492 * 109.47438 * 204.76801 * 13 11 9 16 16 H 1.48503 * 109.47252 * 324.77026 * 13 11 9 17 17 C 1.46926 * 118.74010 * 306.64237 * 6 5 3 18 18 C 1.52755 * 109.00604 * 53.30874 * 17 6 5 19 19 C 1.53040 * 109.38660 * 305.58802 * 18 17 6 20 20 H 1.08995 * 109.45063 * 181.25756 * 19 18 17 21 21 C 1.53002 * 109.45981 * 301.22179 * 19 18 17 22 22 H 1.09004 * 109.46798 * 60.00192 * 1 2 3 23 23 H 1.08998 * 109.47299 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47104 * 300.00565 * 1 2 3 25 25 H 1.00903 * 110.99771 * 123.94870 * 2 1 3 26 26 H 1.08997 * 109.58947 * 54.80013 * 5 3 2 27 27 H 1.09001 * 109.70310 * 294.43848 * 5 3 2 28 28 H 0.96991 * 120.00198 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.58804 * 173.14547 * 17 6 5 30 30 H 1.09001 * 109.58623 * 293.56953 * 17 6 5 31 31 H 1.09002 * 109.56434 * 185.55290 * 18 17 6 32 32 H 1.09005 * 109.36301 * 65.50390 * 18 17 6 33 33 H 1.08993 * 109.46999 * 180.02562 * 21 19 18 34 34 H 1.09000 * 109.46892 * 300.06808 * 21 19 18 35 35 H 1.09003 * 109.46872 * 60.06343 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3412 2.0128 -0.5905 5 6 2.0612 1.8939 1.4386 6 7 2.7090 3.2126 1.4336 7 6 2.1074 4.2754 2.0037 8 8 0.9783 4.1709 2.4454 9 6 2.8099 5.5568 2.0864 10 1 3.8825 5.5935 1.9653 11 6 2.0912 6.7355 2.3226 12 7 2.7266 7.8466 2.5858 13 14 0.2243 6.7192 2.2613 14 1 -0.3104 6.2917 3.5792 15 1 -0.2724 8.0821 1.9440 16 1 -0.2283 5.7707 1.2122 17 6 4.0224 3.3521 0.7899 18 6 3.9372 2.8121 -0.6365 19 6 3.4008 1.3791 -0.6059 20 1 3.3606 0.9849 -1.6213 21 6 4.3269 0.5062 0.2434 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8306 -0.5261 0.7814 26 1 2.6412 1.2042 2.0517 27 1 1.0531 1.9836 1.8434 28 1 2.2289 8.6629 2.7490 29 1 4.3070 4.4040 0.7645 30 1 4.7656 2.7837 1.3490 31 1 4.9285 2.8199 -1.0896 32 1 3.2646 3.4399 -1.2211 33 1 3.9453 -0.5145 0.2649 34 1 5.3279 0.5116 -0.1880 35 1 4.3669 0.9001 1.2590 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117301226.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:21 Heat of formation + Delta-G solvation = -72.056320 kcal Electronic energy + Delta-G solvation = -16639.101901 eV Core-core repulsion = 14056.293666 eV Total energy + Delta-G solvation = -2582.808236 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.05189 -38.85944 -36.11645 -35.03770 -33.95302 -31.06443 -29.14965 -27.92634 -25.85615 -25.42510 -23.22099 -21.67899 -19.80423 -18.46266 -18.10129 -17.05013 -16.92044 -16.07641 -15.68865 -15.53168 -15.24696 -14.99348 -14.55555 -14.17477 -14.10202 -13.66448 -13.55236 -13.17091 -12.89450 -12.82915 -12.58430 -12.43643 -12.19012 -11.83045 -11.59106 -11.40069 -11.27406 -11.18489 -10.10707 -9.71725 -9.09065 -8.82742 -7.02655 1.27086 1.30647 1.52231 2.03108 2.27557 2.59912 3.24661 3.27649 3.82233 3.87949 4.06767 4.17345 4.28723 4.41796 4.52816 4.54488 4.62960 4.75116 4.84822 4.87639 4.97534 4.98160 5.00245 5.18020 5.22291 5.30619 5.43133 5.58231 5.66653 5.82669 6.03782 6.21114 6.41200 6.59352 7.10428 7.93593 8.23067 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.033471 B = 0.009313 C = 0.007817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.353440 B = 3005.766018 C = 3581.201888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.674 5.674 3 C 0.085 3.915 4 H 0.052 0.948 5 C 0.094 3.906 6 N -0.627 5.627 7 C 0.549 3.451 8 O -0.651 6.651 9 C -0.550 4.550 10 H 0.086 0.914 11 C 0.072 3.928 12 N -0.847 5.847 13 Si 1.006 2.994 14 H -0.293 1.293 15 H -0.292 1.292 16 H -0.292 1.292 17 C 0.114 3.886 18 C -0.125 4.125 19 C -0.069 4.069 20 H 0.085 0.915 21 C -0.143 4.143 22 H 0.058 0.942 23 H 0.091 0.909 24 H 0.008 0.992 25 H 0.348 0.652 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.292 0.708 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -13.802 -6.996 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.304 5.304 3 C -0.026 4.026 4 H 0.071 0.929 5 C -0.031 4.031 6 N -0.359 5.359 7 C 0.356 3.644 8 O -0.546 6.546 9 C -0.586 4.586 10 H 0.104 0.896 11 C -0.143 4.143 12 N -0.478 5.478 13 Si 0.838 3.162 14 H -0.220 1.220 15 H -0.221 1.221 16 H -0.219 1.219 17 C -0.008 4.008 18 C -0.163 4.163 19 C -0.088 4.088 20 H 0.103 0.897 21 C -0.200 4.200 22 H 0.077 0.923 23 H 0.110 0.890 24 H 0.027 0.973 25 H 0.167 0.833 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.071 -13.759 -7.431 15.774 hybrid contribution -1.066 0.778 1.223 1.799 sum 1.005 -12.981 -6.208 14.424 Atomic orbital electron populations 1.22275 0.87681 1.02747 0.99811 1.60699 1.07969 1.12080 1.49655 1.21865 0.97469 0.89328 0.93949 0.92923 1.22136 0.97677 0.84893 0.98411 1.47617 1.21288 1.08018 1.59008 1.18351 0.84287 0.85065 0.76696 1.90184 1.22900 1.84130 1.57343 1.20950 0.96481 0.90101 1.51101 0.89592 1.26174 1.04321 0.94423 0.89428 1.69550 1.40134 1.01302 1.36780 0.84719 0.78916 0.73717 0.78846 1.22036 1.22114 1.21867 1.21641 0.83604 1.02157 0.93425 1.21896 1.02620 0.96107 0.95727 1.21007 0.92537 0.94883 1.00422 0.89656 1.21844 0.99367 0.99566 0.99206 0.92287 0.89045 0.97298 0.83284 0.91176 0.93182 0.89735 0.90659 0.91091 0.88023 0.93390 0.91334 0.91198 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 10.50 127.69 1.34 1.92 16 2 N -0.67 -16.17 6.17 -514.21 -3.17 -19.34 16 3 C 0.09 2.52 2.32 44.99 0.10 2.63 16 4 H 0.05 1.84 7.80 -2.39 -0.02 1.82 16 5 C 0.09 3.41 5.23 86.36 0.45 3.86 16 6 N -0.63 -27.12 2.98 -824.83 -2.46 -29.57 16 7 C 0.55 30.02 7.21 86.36 0.62 30.65 16 8 O -0.65 -39.13 12.12 -4.33 -0.05 -39.18 16 9 C -0.55 -31.57 9.08 24.83 0.23 -31.35 16 10 H 0.09 4.90 6.43 -2.91 -0.02 4.88 16 11 C 0.07 4.19 5.52 85.30 0.47 4.66 16 12 N -0.85 -48.21 13.92 21.84 0.30 -47.90 16 13 Si 1.01 53.40 25.83 68.60 1.77 55.17 16 14 H -0.29 -16.21 7.11 99.48 0.71 -15.50 16 15 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 16 H -0.29 -16.46 6.82 99.48 0.68 -15.79 16 17 C 0.11 4.00 5.79 86.22 0.50 4.50 16 18 C -0.12 -3.45 5.61 30.53 0.17 -3.28 16 19 C -0.07 -1.71 2.90 -10.77 -0.03 -1.75 16 20 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 21 C -0.14 -2.92 8.19 71.98 0.59 -2.33 16 22 H 0.06 1.43 8.06 -2.39 -0.02 1.41 16 23 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.01 0.23 7.56 -2.39 -0.02 0.21 16 25 H 0.35 7.31 7.76 -89.69 -0.70 6.61 16 26 H 0.07 2.24 6.59 -2.39 -0.02 2.22 16 27 H 0.05 2.13 6.47 -2.39 -0.02 2.11 16 28 H 0.29 15.17 8.29 -92.71 -0.77 14.40 16 29 H 0.08 2.99 5.61 -2.39 -0.01 2.97 16 30 H 0.07 2.18 6.70 -2.39 -0.02 2.16 16 31 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.05 1.49 8.14 -2.38 -0.02 1.48 16 33 H 0.07 1.25 7.23 -2.39 -0.02 1.23 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.04 1.06 4.99 -2.39 -0.01 1.04 16 Total: -1.00 -67.64 268.57 1.21 -66.44 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 0.37 Total: 4.89 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 4.44 Total: 9.49 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -5.32 Total: -96.81 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -0.05 Total: -39.18 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 1.77 Total: 55.17 kcal Total: -67.64 1.21 -66.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117301226.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.618 kcal (2) G-P(sol) polarization free energy of solvation -67.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds