Wall clock time and date at job start Mon Mar 30 2020 03:59:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46904 * 111.00140 * 2 1
4 4 H 1.08996 * 109.52464 * 324.91649 * 3 2 1
5 5 C 1.53190 * 109.49634 * 84.99886 * 3 2 1
6 6 N 1.46928 * 108.77311 * 174.58625 * 5 3 2
7 7 C 1.34776 * 120.63003 * 126.36540 * 6 5 3
8 8 O 1.21693 * 120.00101 * 354.81675 * 7 6 5
9 9 C 1.46371 * 120.00180 * 175.08971 * 7 6 5
10 10 H 1.08005 * 120.00120 * 342.17675 * 9 7 6
11 11 C 1.40051 * 120.00233 * 162.17666 * 9 7 6
12 12 N 1.30673 * 120.00193 * 170.24656 * 11 9 7
13 13 Si 1.86796 * 120.00061 * 350.24449 * 11 9 7
14 14 H 1.48507 * 109.46850 * 84.76813 * 13 11 9
15 15 H 1.48492 * 109.47438 * 204.76801 * 13 11 9
16 16 H 1.48503 * 109.47252 * 324.77026 * 13 11 9
17 17 C 1.46926 * 118.74010 * 306.64237 * 6 5 3
18 18 C 1.52755 * 109.00604 * 53.30874 * 17 6 5
19 19 C 1.53040 * 109.38660 * 305.58802 * 18 17 6
20 20 H 1.08995 * 109.45063 * 181.25756 * 19 18 17
21 21 C 1.53002 * 109.45981 * 301.22179 * 19 18 17
22 22 H 1.09004 * 109.46798 * 60.00192 * 1 2 3
23 23 H 1.08998 * 109.47299 * 180.02562 * 1 2 3
24 24 H 1.08992 * 109.47104 * 300.00565 * 1 2 3
25 25 H 1.00903 * 110.99771 * 123.94870 * 2 1 3
26 26 H 1.08997 * 109.58947 * 54.80013 * 5 3 2
27 27 H 1.09001 * 109.70310 * 294.43848 * 5 3 2
28 28 H 0.96991 * 120.00198 * 179.97438 * 12 11 9
29 29 H 1.09000 * 109.58804 * 173.14547 * 17 6 5
30 30 H 1.09001 * 109.58623 * 293.56953 * 17 6 5
31 31 H 1.09002 * 109.56434 * 185.55290 * 18 17 6
32 32 H 1.09005 * 109.36301 * 65.50390 * 18 17 6
33 33 H 1.08993 * 109.46999 * 180.02562 * 21 19 18
34 34 H 1.09000 * 109.46892 * 300.06808 * 21 19 18
35 35 H 1.09003 * 109.46872 * 60.06343 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3715 0.0000
4 1 1.3412 2.0128 -0.5905
5 6 2.0612 1.8939 1.4386
6 7 2.7090 3.2126 1.4336
7 6 2.1074 4.2754 2.0037
8 8 0.9783 4.1709 2.4454
9 6 2.8099 5.5568 2.0864
10 1 3.8825 5.5935 1.9653
11 6 2.0912 6.7355 2.3226
12 7 2.7266 7.8466 2.5858
13 14 0.2243 6.7192 2.2613
14 1 -0.3104 6.2917 3.5792
15 1 -0.2724 8.0821 1.9440
16 1 -0.2283 5.7707 1.2122
17 6 4.0224 3.3521 0.7899
18 6 3.9372 2.8121 -0.6365
19 6 3.4008 1.3791 -0.6059
20 1 3.3606 0.9849 -1.6213
21 6 4.3269 0.5062 0.2434
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3634 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8899
25 1 1.8306 -0.5261 0.7814
26 1 2.6412 1.2042 2.0517
27 1 1.0531 1.9836 1.8434
28 1 2.2289 8.6629 2.7490
29 1 4.3070 4.4040 0.7645
30 1 4.7656 2.7837 1.3490
31 1 4.9285 2.8199 -1.0896
32 1 3.2646 3.4399 -1.2211
33 1 3.9453 -0.5145 0.2649
34 1 5.3279 0.5116 -0.1880
35 1 4.3669 0.9001 1.2590
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000117301226.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:59:21
Heat of formation + Delta-G solvation = -72.056320 kcal
Electronic energy + Delta-G solvation = -16639.101901 eV
Core-core repulsion = 14056.293666 eV
Total energy + Delta-G solvation = -2582.808236 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.05189 -38.85944 -36.11645 -35.03770 -33.95302 -31.06443 -29.14965 -27.92634
-25.85615 -25.42510 -23.22099 -21.67899 -19.80423 -18.46266 -18.10129 -17.05013
-16.92044 -16.07641 -15.68865 -15.53168 -15.24696 -14.99348 -14.55555 -14.17477
-14.10202 -13.66448 -13.55236 -13.17091 -12.89450 -12.82915 -12.58430 -12.43643
-12.19012 -11.83045 -11.59106 -11.40069 -11.27406 -11.18489 -10.10707 -9.71725
-9.09065 -8.82742 -7.02655 1.27086 1.30647 1.52231 2.03108 2.27557
2.59912 3.24661 3.27649 3.82233 3.87949 4.06767 4.17345 4.28723
4.41796 4.52816 4.54488 4.62960 4.75116 4.84822 4.87639 4.97534
4.98160 5.00245 5.18020 5.22291 5.30619 5.43133 5.58231 5.66653
5.82669 6.03782 6.21114 6.41200 6.59352 7.10428 7.93593 8.23067
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.033471 B = 0.009313 C = 0.007817
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 836.353440 B = 3005.766018 C = 3581.201888
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.674 5.674
3 C 0.085 3.915
4 H 0.052 0.948
5 C 0.094 3.906
6 N -0.627 5.627
7 C 0.549 3.451
8 O -0.651 6.651
9 C -0.550 4.550
10 H 0.086 0.914
11 C 0.072 3.928
12 N -0.847 5.847
13 Si 1.006 2.994
14 H -0.293 1.293
15 H -0.292 1.292
16 H -0.292 1.292
17 C 0.114 3.886
18 C -0.125 4.125
19 C -0.069 4.069
20 H 0.085 0.915
21 C -0.143 4.143
22 H 0.058 0.942
23 H 0.091 0.909
24 H 0.008 0.992
25 H 0.348 0.652
26 H 0.070 0.930
27 H 0.050 0.950
28 H 0.292 0.708
29 H 0.075 0.925
30 H 0.071 0.929
31 H 0.101 0.899
32 H 0.047 0.953
33 H 0.068 0.932
34 H 0.069 0.931
35 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.501 -13.802 -6.996 15.674
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 N -0.304 5.304
3 C -0.026 4.026
4 H 0.071 0.929
5 C -0.031 4.031
6 N -0.359 5.359
7 C 0.356 3.644
8 O -0.546 6.546
9 C -0.586 4.586
10 H 0.104 0.896
11 C -0.143 4.143
12 N -0.478 5.478
13 Si 0.838 3.162
14 H -0.220 1.220
15 H -0.221 1.221
16 H -0.219 1.219
17 C -0.008 4.008
18 C -0.163 4.163
19 C -0.088 4.088
20 H 0.103 0.897
21 C -0.200 4.200
22 H 0.077 0.923
23 H 0.110 0.890
24 H 0.027 0.973
25 H 0.167 0.833
26 H 0.088 0.912
27 H 0.068 0.932
28 H 0.103 0.897
29 H 0.093 0.907
30 H 0.089 0.911
31 H 0.120 0.880
32 H 0.066 0.934
33 H 0.087 0.913
34 H 0.088 0.912
35 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 2.071 -13.759 -7.431 15.774
hybrid contribution -1.066 0.778 1.223 1.799
sum 1.005 -12.981 -6.208 14.424
Atomic orbital electron populations
1.22275 0.87681 1.02747 0.99811 1.60699 1.07969 1.12080 1.49655
1.21865 0.97469 0.89328 0.93949 0.92923 1.22136 0.97677 0.84893
0.98411 1.47617 1.21288 1.08018 1.59008 1.18351 0.84287 0.85065
0.76696 1.90184 1.22900 1.84130 1.57343 1.20950 0.96481 0.90101
1.51101 0.89592 1.26174 1.04321 0.94423 0.89428 1.69550 1.40134
1.01302 1.36780 0.84719 0.78916 0.73717 0.78846 1.22036 1.22114
1.21867 1.21641 0.83604 1.02157 0.93425 1.21896 1.02620 0.96107
0.95727 1.21007 0.92537 0.94883 1.00422 0.89656 1.21844 0.99367
0.99566 0.99206 0.92287 0.89045 0.97298 0.83284 0.91176 0.93182
0.89735 0.90659 0.91091 0.88023 0.93390 0.91334 0.91198 0.93626
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.57 10.50 127.69 1.34 1.92 16
2 N -0.67 -16.17 6.17 -514.21 -3.17 -19.34 16
3 C 0.09 2.52 2.32 44.99 0.10 2.63 16
4 H 0.05 1.84 7.80 -2.39 -0.02 1.82 16
5 C 0.09 3.41 5.23 86.36 0.45 3.86 16
6 N -0.63 -27.12 2.98 -824.83 -2.46 -29.57 16
7 C 0.55 30.02 7.21 86.36 0.62 30.65 16
8 O -0.65 -39.13 12.12 -4.33 -0.05 -39.18 16
9 C -0.55 -31.57 9.08 24.83 0.23 -31.35 16
10 H 0.09 4.90 6.43 -2.91 -0.02 4.88 16
11 C 0.07 4.19 5.52 85.30 0.47 4.66 16
12 N -0.85 -48.21 13.92 21.84 0.30 -47.90 16
13 Si 1.01 53.40 25.83 68.60 1.77 55.17 16
14 H -0.29 -16.21 7.11 99.48 0.71 -15.50 16
15 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16
16 H -0.29 -16.46 6.82 99.48 0.68 -15.79 16
17 C 0.11 4.00 5.79 86.22 0.50 4.50 16
18 C -0.12 -3.45 5.61 30.53 0.17 -3.28 16
19 C -0.07 -1.71 2.90 -10.77 -0.03 -1.75 16
20 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16
21 C -0.14 -2.92 8.19 71.98 0.59 -2.33 16
22 H 0.06 1.43 8.06 -2.39 -0.02 1.41 16
23 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16
24 H 0.01 0.23 7.56 -2.39 -0.02 0.21 16
25 H 0.35 7.31 7.76 -89.69 -0.70 6.61 16
26 H 0.07 2.24 6.59 -2.39 -0.02 2.22 16
27 H 0.05 2.13 6.47 -2.39 -0.02 2.11 16
28 H 0.29 15.17 8.29 -92.71 -0.77 14.40 16
29 H 0.08 2.99 5.61 -2.39 -0.01 2.97 16
30 H 0.07 2.18 6.70 -2.39 -0.02 2.16 16
31 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16
32 H 0.05 1.49 8.14 -2.38 -0.02 1.48 16
33 H 0.07 1.25 7.23 -2.39 -0.02 1.23 16
34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
35 H 0.04 1.06 4.99 -2.39 -0.01 1.04 16
Total: -1.00 -67.64 268.57 1.21 -66.44
By element:
Atomic # 1 Polarization: 4.53 SS G_CDS: 0.37 Total: 4.89 kcal
Atomic # 6 Polarization: 5.05 SS G_CDS: 4.44 Total: 9.49 kcal
Atomic # 7 Polarization: -91.49 SS G_CDS: -5.32 Total: -96.81 kcal
Atomic # 8 Polarization: -39.13 SS G_CDS: -0.05 Total: -39.18 kcal
Atomic # 14 Polarization: 53.40 SS G_CDS: 1.77 Total: 55.17 kcal
Total: -67.64 1.21 -66.44 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000117301226.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.618 kcal
(2) G-P(sol) polarization free energy of solvation -67.645 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.262 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.438 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.056 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds