Wall clock time and date at job start Mon Mar 30 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21586 * 120.00002 * 0.02562 * 14 13 3 16 16 N 1.34781 * 120.00198 * 179.97438 * 14 13 3 17 17 C 1.46498 * 119.99958 * 179.97438 * 16 14 13 18 18 C 1.53784 * 113.61493 * 254.13873 * 17 16 14 19 19 C 1.53952 * 87.02044 * 220.05266 * 18 17 16 20 20 C 1.53783 * 113.61012 * 156.53352 * 17 16 14 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 27 27 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 28 28 H 0.97002 * 119.99301 * 0.02562 * 16 14 13 29 29 H 1.08991 * 112.84916 * 25.33706 * 17 16 14 30 30 H 1.08999 * 113.61058 * 334.57087 * 18 17 16 31 31 H 1.08999 * 113.61407 * 105.47308 * 18 17 16 32 32 H 1.08996 * 113.53670 * 270.81660 * 19 18 17 33 33 H 1.08998 * 113.66736 * 139.93019 * 19 18 17 34 34 H 1.09000 * 113.61578 * 254.52974 * 20 17 16 35 35 H 1.09003 * 113.61428 * 25.35049 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3412 2.6326 -0.4316 16 7 0.0787 3.2675 -2.5183 17 6 -1.2447 3.8832 -2.6435 18 6 -2.2201 3.0752 -3.5158 19 6 -2.6974 4.4221 -4.0887 20 6 -1.3139 4.9817 -3.7176 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.8293 -0.0605 2.9501 27 1 2.2718 2.1232 -1.9978 28 1 0.6982 3.2931 -3.2643 29 1 -1.6641 4.1841 -1.6836 30 1 -1.7252 2.4393 -4.2498 31 1 -2.9834 2.5479 -2.9436 32 1 -3.5152 4.8699 -3.5241 33 1 -2.8854 4.3990 -5.1621 34 1 -1.3467 5.9913 -3.3081 35 1 -0.5699 4.8687 -4.5062 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127914890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:23 Heat of formation + Delta-G solvation = -22.320165 kcal Electronic energy + Delta-G solvation = -16020.812389 eV Core-core repulsion = 13440.160874 eV Total energy + Delta-G solvation = -2580.651514 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.66974 -38.03289 -34.97911 -32.95075 -32.07887 -30.48627 -26.92574 -25.62824 -24.56983 -22.84477 -20.58769 -19.81345 -19.27688 -17.88474 -16.42978 -15.92031 -15.15733 -14.97762 -14.55434 -14.05110 -13.30491 -12.87878 -12.62046 -12.50927 -12.36890 -11.84935 -11.48790 -11.28586 -11.14361 -10.93918 -10.78443 -10.58209 -10.38909 -10.27114 -10.07496 -9.55364 -9.20422 -8.96718 -8.52292 -8.43993 -7.65223 -6.07140 -4.16029 3.28297 3.33347 3.34189 3.53755 4.03611 4.37028 4.57801 4.66547 4.88501 5.02000 5.20288 5.25210 5.61855 5.67601 5.76310 5.81268 6.03149 6.07819 6.37510 6.48150 6.56609 6.75860 7.01526 7.12923 7.24739 7.48068 7.49996 7.62048 7.70604 7.96566 8.14739 8.26819 8.83545 9.04415 9.43182 9.59301 10.98255 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.048812 B = 0.006109 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.488845 B = 4582.493839 C = 4947.654975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.727 5.727 14 C 0.694 3.306 15 O -0.596 6.596 16 N -0.749 5.749 17 C 0.147 3.853 18 C -0.156 4.156 19 C -0.140 4.140 20 C -0.149 4.149 21 H 0.049 0.951 22 H 0.019 0.981 23 H 0.040 0.960 24 H 0.097 0.903 25 H 0.029 0.971 26 H 0.264 0.736 27 H 0.383 0.617 28 H 0.389 0.611 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 5.469 -11.692 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.378 5.378 14 C 0.394 3.606 15 O -0.474 6.474 16 N -0.404 5.404 17 C 0.041 3.959 18 C -0.196 4.196 19 C -0.178 4.178 20 C -0.187 4.187 21 H 0.068 0.932 22 H 0.038 0.962 23 H 0.059 0.941 24 H 0.116 0.884 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.214 0.786 28 H 0.222 0.778 29 H 0.129 0.871 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.487 5.312 -10.561 13.993 hybrid contribution 1.590 -0.061 -0.649 1.718 sum -5.897 5.250 -11.211 13.712 Atomic orbital electron populations 1.21808 0.98323 0.97679 1.01375 1.21943 0.92691 1.00027 1.02012 1.18637 0.93752 0.88822 0.80356 0.93444 1.21212 0.90846 1.38877 1.06190 0.92266 1.24876 0.98502 0.94895 0.95414 1.69894 1.35132 1.37663 1.09319 0.86521 0.84986 0.78242 0.77390 1.20255 1.21160 1.20232 1.45777 1.13701 1.59356 1.18983 1.16176 0.83207 0.78603 0.82620 1.90866 1.52428 1.65358 1.38794 1.45241 1.17396 1.62262 1.15547 1.22221 0.82817 0.92480 0.98413 1.23506 0.99625 0.96789 0.99632 1.22703 0.96827 0.97323 1.00916 1.23341 0.97595 0.98958 0.98846 0.93236 0.96188 0.94135 0.88441 0.95244 0.92567 0.78573 0.77753 0.87112 0.90113 0.91236 0.90043 0.91291 0.91074 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.20 5.45 -26.73 -0.15 -3.34 16 3 C 0.29 7.39 2.24 -69.08 -0.15 7.23 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -25.03 11.29 55.43 0.63 -24.41 16 9 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.73 -15.48 5.03 -59.81 -0.30 -15.78 16 14 C 0.69 14.31 7.13 -86.91 -0.62 13.69 16 15 O -0.60 -14.55 13.10 5.29 0.07 -14.48 16 16 N -0.75 -11.47 5.37 -57.88 -0.31 -11.79 16 17 C 0.15 1.99 4.21 -67.12 -0.28 1.70 16 18 C -0.16 -1.82 7.89 -25.83 -0.20 -2.02 16 19 C -0.14 -1.28 8.09 -25.83 -0.21 -1.49 16 20 C -0.15 -1.48 7.83 -25.92 -0.20 -1.68 16 21 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 22 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.04 0.93 5.65 -51.93 -0.29 0.64 16 24 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.38 7.08 8.55 -40.82 -0.35 6.73 16 28 H 0.39 4.84 8.73 -40.82 -0.36 4.48 16 29 H 0.11 1.73 7.50 -51.93 -0.39 1.34 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 LS Contribution 283.97 15.07 4.28 4.28 Total: -1.00 -30.54 283.97 -7.97 -38.52 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.42 Total: 9.50 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.90 Total: -1.60 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.01 Total: -51.98 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.07 Total: -14.48 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.54 -7.97 -38.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127914890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.195 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds