Wall clock time and date at job start Mon Mar 30 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21586 * 120.00002 * 0.02562 * 14 13 3 16 16 N 1.34781 * 120.00198 * 179.97438 * 14 13 3 17 17 C 1.46498 * 119.99958 * 179.97438 * 16 14 13 18 18 C 1.53784 * 113.61493 * 254.13873 * 17 16 14 19 19 C 1.53952 * 87.02044 * 220.05266 * 18 17 16 20 20 C 1.53783 * 113.61012 * 156.53352 * 17 16 14 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 27 27 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 28 28 H 0.97002 * 119.99301 * 0.02562 * 16 14 13 29 29 H 1.08991 * 112.84916 * 25.33706 * 17 16 14 30 30 H 1.08999 * 113.61058 * 334.57087 * 18 17 16 31 31 H 1.08999 * 113.61407 * 105.47308 * 18 17 16 32 32 H 1.08996 * 113.53670 * 270.81660 * 19 18 17 33 33 H 1.08998 * 113.66736 * 139.93019 * 19 18 17 34 34 H 1.09000 * 113.61578 * 254.52974 * 20 17 16 35 35 H 1.09003 * 113.61428 * 25.35049 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3412 2.6326 -0.4316 16 7 0.0787 3.2675 -2.5183 17 6 -1.2447 3.8832 -2.6435 18 6 -2.2201 3.0752 -3.5158 19 6 -2.6974 4.4221 -4.0887 20 6 -1.3139 4.9817 -3.7176 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.8293 -0.0605 2.9501 27 1 2.2718 2.1232 -1.9978 28 1 0.6982 3.2931 -3.2643 29 1 -1.6641 4.1841 -1.6836 30 1 -1.7252 2.4393 -4.2498 31 1 -2.9834 2.5479 -2.9436 32 1 -3.5152 4.8699 -3.5241 33 1 -2.8854 4.3990 -5.1621 34 1 -1.3467 5.9913 -3.3081 35 1 -0.5699 4.8687 -4.5062 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127914890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:23 Heat of formation + Delta-G solvation = -43.629373 kcal Electronic energy + Delta-G solvation = -16021.736425 eV Core-core repulsion = 13440.160874 eV Total energy + Delta-G solvation = -2581.575551 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.11664 -39.28554 -36.86691 -34.55592 -33.95866 -32.30477 -28.89943 -26.49753 -25.81054 -24.71938 -22.28681 -21.30784 -20.69506 -19.52249 -17.96402 -17.58837 -16.76392 -16.43193 -16.02561 -15.74454 -15.01774 -14.54140 -14.23960 -13.66192 -13.51763 -13.32238 -13.15761 -13.12287 -12.88050 -12.63313 -12.24621 -12.15000 -11.97191 -11.59996 -11.45775 -11.28662 -11.03697 -10.94125 -10.50652 -9.96404 -9.39942 -8.13478 -6.30772 1.46137 1.48344 1.56051 2.06695 2.40530 2.46328 3.15721 3.65749 3.70277 3.80861 4.03508 4.07420 4.51509 4.59970 4.71182 4.80256 4.84763 4.87025 5.08125 5.10709 5.11929 5.19065 5.27455 5.43421 5.48190 5.58610 5.67422 5.79700 5.82176 5.94092 6.20884 6.44451 6.78108 7.37364 7.46321 7.91354 8.91993 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.048812 B = 0.006109 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.488845 B = 4582.493839 C = 4947.654975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.295 3.705 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.724 5.724 14 C 0.690 3.310 15 O -0.639 6.639 16 N -0.728 5.728 17 C 0.124 3.876 18 C -0.156 4.156 19 C -0.125 4.125 20 C -0.133 4.133 21 H 0.023 0.977 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.265 0.735 27 H 0.399 0.601 28 H 0.407 0.593 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 6.017 -14.130 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 C 0.191 3.809 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.376 5.376 14 C 0.390 3.610 15 O -0.521 6.521 16 N -0.384 5.384 17 C 0.019 3.981 18 C -0.195 4.195 19 C -0.163 4.163 20 C -0.171 4.171 21 H 0.042 0.958 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.233 0.767 28 H 0.243 0.757 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.841 5.890 -13.082 15.894 hybrid contribution 1.317 -0.197 0.102 1.336 sum -5.524 5.693 -12.980 15.212 Atomic orbital electron populations 1.21628 0.97116 0.98743 1.00149 1.21791 0.93649 0.99393 1.01116 1.18208 0.93355 0.88758 0.80545 0.98800 1.21548 0.91392 1.38939 1.06723 0.91111 1.25778 1.03374 0.94371 0.94974 1.70054 1.37152 1.38362 1.09840 0.85403 0.78993 0.78392 0.77545 1.19730 1.21195 1.18893 1.45419 1.14532 1.59514 1.18164 1.16354 0.82482 0.78643 0.83501 1.90841 1.53542 1.66885 1.40810 1.45074 1.18454 1.60677 1.14197 1.22535 0.82038 0.94989 0.98560 1.23509 0.98756 0.97999 0.99248 1.22668 0.96484 0.94925 1.02240 1.23309 0.98505 0.97837 0.97478 0.95821 0.93813 0.93939 0.91037 0.94175 0.92615 0.76713 0.75660 0.90025 0.89314 0.92664 0.89553 0.89003 0.90430 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.51 71.98 0.61 -5.02 16 2 C -0.12 -6.12 5.45 30.59 0.17 -5.96 16 3 C 0.30 15.61 2.24 44.24 0.10 15.71 16 4 H -0.01 -0.37 7.58 -2.38 -0.02 -0.39 16 5 C -0.55 -29.40 8.73 25.60 0.22 -29.18 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.82 5.29 84.66 0.45 1.27 16 8 N -0.92 -53.11 11.29 21.45 0.24 -52.87 16 9 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 12 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 13 N -0.72 -30.85 5.03 -461.40 -2.32 -33.17 16 14 C 0.69 28.66 7.13 179.05 1.28 29.94 16 15 O -0.64 -32.34 13.10 -3.99 -0.05 -32.39 16 16 N -0.73 -21.51 5.37 -455.29 -2.44 -23.95 16 17 C 0.12 3.23 4.21 45.52 0.19 3.43 16 18 C -0.16 -3.37 7.89 31.18 0.25 -3.12 16 19 C -0.13 -1.93 8.09 31.18 0.25 -1.67 16 20 C -0.13 -2.26 7.83 31.12 0.24 -2.01 16 21 H 0.02 1.20 7.84 -2.39 -0.02 1.18 16 22 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.04 1.96 5.65 -2.38 -0.01 1.95 16 24 H 0.07 4.04 5.95 -2.39 -0.01 4.03 16 25 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 27 H 0.40 14.28 8.55 -92.71 -0.79 13.49 16 28 H 0.41 9.16 8.73 -92.71 -0.81 8.35 16 29 H 0.08 2.62 7.50 -2.39 -0.02 2.60 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 1.38 8.11 -2.39 -0.02 1.36 16 Total: -1.00 -67.91 283.97 0.70 -67.21 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -0.51 Total: 27.43 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 3.76 Total: 3.37 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -4.52 Total: -109.99 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.05 Total: -32.39 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -67.91 0.70 -67.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127914890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.579 kcal (2) G-P(sol) polarization free energy of solvation -67.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds