Wall clock time and date at job start Mon Mar 30 2020 02:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46832 * 2 1 4 4 H 1.08998 * 109.46773 * 304.99898 * 3 2 1 5 5 C 1.50698 * 109.46694 * 185.00008 * 3 2 1 6 6 H 1.08000 * 120.00302 * 239.99525 * 5 3 2 7 7 C 1.37883 * 120.00048 * 60.00073 * 5 3 2 8 8 N 1.31510 * 119.99889 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00101 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46987 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.47169 * 120.00051 * 9 7 5 12 12 H 1.48500 * 109.47106 * 240.00225 * 9 7 5 13 13 N 1.46496 * 109.46973 * 65.00057 * 3 2 1 14 14 C 1.34778 * 120.00108 * 274.99370 * 13 3 2 15 15 O 1.21587 * 120.00053 * 0.02562 * 14 13 3 16 16 N 1.34776 * 119.99734 * 179.97438 * 14 13 3 17 17 C 1.46506 * 119.99649 * 179.97438 * 16 14 13 18 18 C 1.53779 * 113.61276 * 155.00300 * 17 16 14 19 19 C 1.53787 * 87.07963 * 89.20243 * 18 17 16 20 20 C 1.53779 * 113.69339 * 252.54233 * 17 16 14 21 21 H 1.09001 * 109.47298 * 299.99667 * 1 2 3 22 22 H 1.08998 * 109.47066 * 60.00088 * 1 2 3 23 23 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46992 * 239.99911 * 2 1 3 25 25 H 1.08998 * 109.47066 * 119.99912 * 2 1 3 26 26 H 0.97000 * 119.99623 * 179.97438 * 8 7 5 27 27 H 0.97002 * 119.99832 * 95.00507 * 13 3 2 28 28 H 0.96998 * 120.00727 * 0.02562 * 16 14 13 29 29 H 1.09007 * 112.84595 * 23.81259 * 17 16 14 30 30 H 1.08997 * 113.61646 * 334.65874 * 18 17 16 31 31 H 1.08998 * 113.69354 * 203.76183 * 18 17 16 32 32 H 1.09004 * 113.61202 * 139.98084 * 19 18 17 33 33 H 1.08994 * 113.61447 * 270.88515 * 19 18 17 34 34 H 1.09002 * 113.61557 * 156.32618 * 20 17 16 35 35 H 1.09004 * 113.61501 * 25.42039 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8812 -1.3819 10 1 6.5987 1.5462 -0.1942 11 1 6.4970 -0.5174 -1.4631 12 1 6.3989 1.6167 -2.6103 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3416 2.6319 0.4320 16 7 0.0784 3.2665 2.5188 17 6 -1.2446 3.8832 2.6437 18 6 -1.7466 3.9758 4.0943 19 6 -1.0460 5.3429 4.1665 20 6 -1.2126 5.4207 2.6397 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8293 -0.0612 -2.9498 27 1 2.2719 2.1232 1.9977 28 1 0.6978 3.2921 3.2648 29 1 -1.9757 3.4599 1.9549 30 1 -1.3112 3.2267 4.7557 31 1 -2.8316 4.0362 4.1794 32 1 -1.6168 6.0980 4.7070 33 1 -0.0068 5.2844 4.4899 34 1 -2.1517 5.8762 2.3255 35 1 -0.3461 5.8380 2.1266 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127915124.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:26 Heat of formation + Delta-G solvation = -20.215120 kcal Electronic energy + Delta-G solvation = -16059.208260 eV Core-core repulsion = 13478.648027 eV Total energy + Delta-G solvation = -2580.560233 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.78580 -38.04524 -34.97019 -32.83874 -32.03891 -30.45504 -26.91210 -25.61592 -24.78894 -22.93618 -20.93097 -19.40582 -19.11050 -18.12093 -16.15589 -15.85948 -15.13698 -14.84523 -14.57058 -14.22768 -13.46003 -13.28691 -12.61573 -12.58178 -12.37831 -11.90402 -11.45198 -11.21929 -10.96232 -10.90191 -10.80856 -10.51082 -10.27563 -10.24567 -10.08403 -9.57167 -9.24188 -8.96349 -8.55412 -8.45633 -7.67408 -6.08343 -4.17037 3.25774 3.32618 3.35280 3.44417 4.01678 4.35947 4.59030 4.68383 4.93343 5.03483 5.18738 5.24538 5.59825 5.67500 5.81940 5.95387 6.06622 6.09428 6.25929 6.47327 6.55533 6.74691 7.02388 7.11770 7.23310 7.46858 7.48441 7.60274 7.70109 7.95397 8.13029 8.25711 8.82892 9.02340 9.41876 9.57540 10.97163 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.041756 B = 0.006374 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.394035 B = 4391.955806 C = 4790.610810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.048 0.952 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.726 5.726 14 C 0.696 3.304 15 O -0.593 6.593 16 N -0.741 5.741 17 C 0.145 3.855 18 C -0.150 4.150 19 C -0.142 4.142 20 C -0.158 4.158 21 H 0.039 0.961 22 H 0.049 0.951 23 H 0.019 0.981 24 H 0.098 0.902 25 H 0.029 0.971 26 H 0.263 0.737 27 H 0.383 0.617 28 H 0.390 0.610 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.187 5.899 11.556 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.066 0.934 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.377 5.377 14 C 0.396 3.604 15 O -0.472 6.472 16 N -0.396 5.396 17 C 0.038 3.962 18 C -0.189 4.189 19 C -0.179 4.179 20 C -0.197 4.197 21 H 0.058 0.942 22 H 0.068 0.932 23 H 0.039 0.961 24 H 0.116 0.884 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.215 0.785 28 H 0.223 0.777 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.861 5.731 10.441 13.745 hybrid contribution 1.596 0.021 0.630 1.716 sum -5.265 5.751 11.071 13.541 Atomic orbital electron populations 1.21810 0.98325 0.97715 1.01355 1.21949 0.92697 1.00005 1.02051 1.18654 0.93812 0.88831 0.80301 0.93403 1.21285 0.90831 1.38706 1.06174 0.92148 1.24883 0.98525 0.94901 0.95424 1.69912 1.34958 1.37777 1.09351 0.86410 0.84980 0.77719 0.78059 1.19818 1.20913 1.20915 1.45768 1.13625 1.59319 1.19023 1.16100 0.83328 0.78435 0.82527 1.90873 1.52257 1.65477 1.38593 1.44878 1.16952 1.62106 1.15690 1.21493 0.85341 0.92580 0.96832 1.23307 1.00927 0.97645 0.96990 1.22874 1.00658 0.97387 0.96980 1.23423 1.02528 0.97707 0.96038 0.94181 0.93210 0.96146 0.88408 0.95209 0.92667 0.78540 0.77749 0.88362 0.91169 0.89209 0.91675 0.90411 0.89676 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.51 37.16 0.32 -2.81 16 2 C -0.13 -3.19 5.45 -26.73 -0.15 -3.33 16 3 C 0.29 7.35 2.24 -69.08 -0.15 7.19 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.98 11.29 55.43 0.63 -24.35 16 9 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.73 -15.40 5.03 -59.81 -0.30 -15.70 16 14 C 0.70 14.30 7.13 -86.92 -0.62 13.68 16 15 O -0.59 -14.47 13.07 5.29 0.07 -14.40 16 16 N -0.74 -11.36 5.27 -57.88 -0.31 -11.66 16 17 C 0.14 1.97 4.32 -67.12 -0.29 1.68 16 18 C -0.15 -1.50 7.83 -25.92 -0.20 -1.70 16 19 C -0.14 -1.34 7.96 -25.91 -0.21 -1.55 16 20 C -0.16 -1.85 7.88 -25.92 -0.20 -2.06 16 21 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 22 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.38 7.06 8.55 -40.82 -0.35 6.71 16 28 H 0.39 4.89 8.72 -40.82 -0.36 4.53 16 29 H 0.10 1.54 7.46 -51.93 -0.39 1.16 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 283.80 15.07 4.28 4.28 Total: -1.00 -30.42 283.80 -7.98 -38.40 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.42 Total: 9.41 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.90 Total: -1.70 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.02 Total: -51.71 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.07 Total: -14.40 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.42 -7.98 -38.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127915124.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.185 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds