Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46832 * 2 1 4 4 H 1.08998 * 109.46773 * 304.99898 * 3 2 1 5 5 C 1.50698 * 109.46694 * 185.00008 * 3 2 1 6 6 H 1.08000 * 120.00302 * 239.99525 * 5 3 2 7 7 C 1.37883 * 120.00048 * 60.00073 * 5 3 2 8 8 N 1.31510 * 119.99889 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00101 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46987 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.47169 * 120.00051 * 9 7 5 12 12 H 1.48500 * 109.47106 * 240.00225 * 9 7 5 13 13 N 1.46496 * 109.46973 * 65.00057 * 3 2 1 14 14 C 1.34778 * 120.00108 * 274.99370 * 13 3 2 15 15 O 1.21587 * 120.00053 * 0.02562 * 14 13 3 16 16 N 1.34776 * 119.99734 * 179.97438 * 14 13 3 17 17 C 1.46506 * 119.99649 * 179.97438 * 16 14 13 18 18 C 1.53779 * 113.61276 * 155.00300 * 17 16 14 19 19 C 1.53787 * 87.07963 * 89.20243 * 18 17 16 20 20 C 1.53779 * 113.69339 * 252.54233 * 17 16 14 21 21 H 1.09001 * 109.47298 * 299.99667 * 1 2 3 22 22 H 1.08998 * 109.47066 * 60.00088 * 1 2 3 23 23 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46992 * 239.99911 * 2 1 3 25 25 H 1.08998 * 109.47066 * 119.99912 * 2 1 3 26 26 H 0.97000 * 119.99623 * 179.97438 * 8 7 5 27 27 H 0.97002 * 119.99832 * 95.00507 * 13 3 2 28 28 H 0.96998 * 120.00727 * 0.02562 * 16 14 13 29 29 H 1.09007 * 112.84595 * 23.81259 * 17 16 14 30 30 H 1.08997 * 113.61646 * 334.65874 * 18 17 16 31 31 H 1.08998 * 113.69354 * 203.76183 * 18 17 16 32 32 H 1.09004 * 113.61202 * 139.98084 * 19 18 17 33 33 H 1.08994 * 113.61447 * 270.88515 * 19 18 17 34 34 H 1.09002 * 113.61557 * 156.32618 * 20 17 16 35 35 H 1.09004 * 113.61501 * 25.42039 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8812 -1.3819 10 1 6.5987 1.5462 -0.1942 11 1 6.4970 -0.5174 -1.4631 12 1 6.3989 1.6167 -2.6103 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3416 2.6319 0.4320 16 7 0.0784 3.2665 2.5188 17 6 -1.2446 3.8832 2.6437 18 6 -1.7466 3.9758 4.0943 19 6 -1.0460 5.3429 4.1665 20 6 -1.2126 5.4207 2.6397 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8293 -0.0612 -2.9498 27 1 2.2719 2.1232 1.9977 28 1 0.6978 3.2921 3.2648 29 1 -1.9757 3.4599 1.9549 30 1 -1.3112 3.2267 4.7557 31 1 -2.8316 4.0362 4.1794 32 1 -1.6168 6.0980 4.7070 33 1 -0.0068 5.2844 4.4899 34 1 -2.1517 5.8762 2.3255 35 1 -0.3461 5.8380 2.1266 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127915124.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = -41.365199 kcal Electronic energy + Delta-G solvation = -16060.125396 eV Core-core repulsion = 13478.648027 eV Total energy + Delta-G solvation = -2581.477369 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.20638 -39.34263 -36.85980 -34.50003 -33.87773 -32.24983 -28.88402 -26.49060 -25.92996 -24.84582 -22.57085 -21.29866 -20.19843 -19.79967 -18.00067 -17.29918 -16.76247 -16.36737 -15.89540 -15.75954 -15.03081 -14.75609 -14.41701 -14.07553 -13.57874 -13.29017 -13.17264 -13.12960 -12.84028 -12.68691 -12.14558 -12.04740 -11.75322 -11.58776 -11.45897 -11.17513 -11.04515 -10.97843 -10.52518 -9.99156 -9.43027 -8.14410 -6.31411 1.45284 1.46007 1.57969 1.98448 2.38274 2.44887 3.15075 3.61868 3.68473 3.81732 4.08937 4.12791 4.51713 4.60073 4.72139 4.79450 4.86830 4.91813 5.09036 5.11326 5.11789 5.20083 5.27490 5.35347 5.47919 5.58248 5.66448 5.80606 5.82283 5.92974 6.20457 6.41733 6.77904 7.36689 7.43748 7.89011 8.91532 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.041756 B = 0.006374 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.394035 B = 4391.955806 C = 4790.610810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.295 3.705 4 H -0.005 1.005 5 C -0.546 4.546 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.723 5.723 14 C 0.693 3.307 15 O -0.636 6.636 16 N -0.720 5.720 17 C 0.121 3.879 18 C -0.132 4.132 19 C -0.128 4.128 20 C -0.159 4.159 21 H 0.041 0.959 22 H 0.023 0.977 23 H 0.044 0.956 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.265 0.735 27 H 0.399 0.601 28 H 0.407 0.593 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.641 6.424 13.960 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.191 3.809 4 H 0.013 0.987 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.211 1.211 13 N -0.375 5.375 14 C 0.393 3.607 15 O -0.518 6.518 16 N -0.376 5.376 17 C 0.015 3.985 18 C -0.171 4.171 19 C -0.165 4.165 20 C -0.198 4.198 21 H 0.061 0.939 22 H 0.042 0.958 23 H 0.063 0.937 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.233 0.767 28 H 0.243 0.757 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.317 6.286 12.927 15.702 hybrid contribution 1.350 -0.100 -0.125 1.359 sum -4.967 6.187 12.803 15.062 Atomic orbital electron populations 1.21632 0.97091 0.98803 1.00152 1.21799 0.93686 0.99345 1.01171 1.18224 0.93386 0.88787 0.80471 0.98729 1.21604 0.91375 1.38754 1.06665 0.91112 1.25779 1.03359 0.94398 0.94999 1.70064 1.37010 1.38462 1.09902 0.85301 0.79043 0.77824 0.78154 1.18492 1.20395 1.21053 1.45405 1.14428 1.59477 1.18217 1.16249 0.82608 0.78474 0.83357 1.90848 1.53367 1.67005 1.40580 1.44648 1.17998 1.60627 1.14336 1.21823 0.83789 0.93650 0.99273 1.23260 1.02069 0.98095 0.93633 1.22832 1.01332 0.97509 0.94837 1.23449 1.02384 0.95799 0.98150 0.93949 0.95788 0.93748 0.91016 0.94103 0.92610 0.76693 0.75730 0.91164 0.90245 0.87439 0.89539 0.89875 0.88510 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.51 71.98 0.61 -5.00 16 2 C -0.12 -6.12 5.45 30.60 0.17 -5.95 16 3 C 0.30 15.55 2.24 44.25 0.10 15.64 16 4 H -0.01 -0.33 7.58 -2.39 -0.02 -0.34 16 5 C -0.55 -29.23 8.73 25.60 0.22 -29.01 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.01 0.79 5.29 84.66 0.45 1.24 16 8 N -0.92 -53.02 11.29 21.45 0.24 -52.77 16 9 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 10 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 N -0.72 -30.73 5.03 -461.42 -2.32 -33.05 16 14 C 0.69 28.75 7.13 179.05 1.28 30.03 16 15 O -0.64 -32.13 13.07 -3.99 -0.05 -32.18 16 16 N -0.72 -21.40 5.27 -455.28 -2.40 -23.80 16 17 C 0.12 3.17 4.32 45.52 0.20 3.36 16 18 C -0.13 -2.24 7.83 31.12 0.24 -2.00 16 19 C -0.13 -2.00 7.96 31.12 0.25 -1.75 16 20 C -0.16 -3.50 7.88 31.12 0.25 -3.26 16 21 H 0.04 1.94 5.64 -2.39 -0.01 1.93 16 22 H 0.02 1.21 7.84 -2.39 -0.02 1.19 16 23 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.07 4.04 5.95 -2.38 -0.01 4.03 16 25 H 0.04 1.93 8.14 -2.39 -0.02 1.92 16 26 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.40 14.28 8.55 -92.71 -0.79 13.48 16 28 H 0.41 9.36 8.72 -92.71 -0.81 8.55 16 29 H 0.07 2.24 7.46 -2.38 -0.02 2.22 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -67.63 283.80 0.75 -66.88 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: -0.51 Total: 27.25 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 3.76 Total: 3.30 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -4.48 Total: -109.62 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.05 Total: -32.18 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -67.63 0.75 -66.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127915124.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.515 kcal (2) G-P(sol) polarization free energy of solvation -67.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds