Wall clock time and date at job start Mon Mar 30 2020 03:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.43115 * 2 1 4 4 C 1.54886 * 110.48671 * 122.53935 * 2 1 3 5 5 C 1.54894 * 102.74773 * 156.62516 * 4 2 1 6 6 C 1.54267 * 104.19333 * 322.05650 * 5 4 2 7 7 H 1.08999 * 110.03082 * 264.27630 * 6 5 4 8 8 N 1.46906 * 110.03103 * 142.89529 * 6 5 4 9 9 C 1.46901 * 110.99793 * 86.45542 * 8 6 5 10 10 C 1.50701 * 109.46921 * 179.97438 * 9 8 6 11 11 O 1.21294 * 119.99849 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99707 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99704 * 359.97438 * 13 12 10 15 15 C 1.38941 * 119.99927 * 180.02562 * 13 12 10 16 16 N 1.31417 * 120.00180 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00273 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46986 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47457 * 119.99901 * 17 15 13 20 20 H 1.48501 * 109.47104 * 239.99973 * 17 15 13 21 21 C 1.53873 * 106.59994 * 23.61448 * 6 5 4 22 22 H 1.08996 * 109.47450 * 298.91072 * 1 2 3 23 23 H 1.09004 * 109.47734 * 58.91603 * 1 2 3 24 24 H 1.09006 * 109.46859 * 178.91451 * 1 2 3 25 25 H 1.08994 * 110.75760 * 38.31214 * 4 2 1 26 26 H 1.09004 * 110.91494 * 275.00349 * 4 2 1 27 27 H 1.08995 * 110.48672 * 203.38342 * 5 4 2 28 28 H 1.08996 * 110.48671 * 80.73395 * 5 4 2 29 29 H 1.00899 * 110.99995 * 322.49940 * 8 6 5 30 30 H 1.09002 * 109.47401 * 59.99808 * 9 8 6 31 31 H 1.09001 * 109.46874 * 299.99821 * 9 8 6 32 32 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 33 33 H 0.97000 * 119.99884 * 180.02562 * 16 15 13 34 34 H 1.08996 * 110.03844 * 119.28559 * 21 6 5 35 35 H 1.09003 * 110.02721 * 240.71770 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9104 1.0214 0.0000 4 6 2.0720 -0.7804 1.2231 5 6 3.4907 -1.1969 0.7615 6 6 3.3165 -1.5413 -0.7321 7 1 3.1702 -2.6146 -0.8531 8 7 4.4975 -1.1063 -1.4899 9 6 5.5413 -2.1399 -1.4772 10 6 6.7339 -1.6592 -2.2631 11 8 6.7162 -0.5631 -2.7823 12 7 7.8204 -2.4467 -2.3881 13 6 8.9056 -2.0092 -3.1027 14 1 8.8895 -1.0335 -3.5657 15 6 10.0255 -2.8212 -3.2321 16 7 10.0449 -4.0086 -2.6692 17 14 11.5044 -2.2248 -4.2051 18 1 11.2329 -0.8640 -4.7339 19 1 12.6957 -2.1837 -3.3196 20 1 11.7600 -3.1529 -5.3358 21 6 2.0699 -0.7803 -1.2163 22 1 -0.3634 0.4968 0.8995 23 1 -0.3635 0.5306 -0.8801 24 1 -0.3633 -1.0276 -0.0195 25 1 1.4581 -1.6582 1.4243 26 1 2.1250 -0.1381 2.1022 27 1 3.8316 -2.0704 1.3171 28 1 4.1897 -0.3694 0.8832 29 1 4.8517 -0.2303 -1.1359 30 1 5.1536 -3.0534 -1.9282 31 1 5.8406 -2.3413 -0.4486 32 1 7.8346 -3.3231 -1.9726 33 1 10.8269 -4.5753 -2.7592 34 1 2.3411 -0.0882 -2.0135 35 1 1.3176 -1.4842 -1.5722 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128943170.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:37 Heat of formation + Delta-G solvation = -57.623224 kcal Electronic energy + Delta-G solvation = -15410.011661 eV Core-core repulsion = 12827.829292 eV Total energy + Delta-G solvation = -2582.182370 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.97802 -37.90027 -34.49332 -33.68753 -31.20283 -30.36221 -28.53929 -26.14985 -24.52362 -23.48502 -20.57996 -19.60664 -19.16653 -17.86083 -16.19719 -15.72658 -15.35613 -14.48231 -14.41211 -14.01969 -13.72562 -13.50113 -13.27931 -12.88515 -12.39287 -12.05864 -11.88489 -11.55886 -11.34976 -11.07980 -11.01970 -10.86417 -10.78389 -10.57304 -10.40493 -10.32325 -10.19657 -9.49373 -8.40151 -7.96345 -7.90044 -6.39222 -3.79907 3.18212 3.28472 3.36076 3.94778 4.14456 4.37542 4.60504 4.62882 4.82297 5.21334 5.25138 5.27290 5.34962 5.43897 5.54244 5.56290 5.67395 5.75411 5.79742 5.88356 5.93304 5.96877 6.03592 6.12585 6.21709 6.29929 6.38907 6.41213 7.38158 7.57881 7.77442 8.09825 8.64568 9.20828 9.57707 10.09430 10.78720 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.076966 B = 0.004475 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.707949 B = 6255.093509 C = 6421.536893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.073 0.927 4 C -0.117 4.117 5 C -0.157 4.157 6 C 0.083 3.917 7 H 0.077 0.923 8 N -0.663 5.663 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.584 6.584 12 N -0.565 5.565 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.111 4.111 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.349 0.651 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.392 0.608 33 H 0.270 0.730 34 H 0.078 0.922 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.479 2.342 7.577 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.196 4.196 6 C -0.028 4.028 7 H 0.095 0.905 8 N -0.295 5.295 9 C -0.083 4.083 10 C 0.227 3.773 11 O -0.468 6.468 12 N -0.202 5.202 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.757 3.243 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.149 4.149 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.169 0.831 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.225 0.775 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.573 2.743 6.589 16.227 hybrid contribution 1.191 -0.382 0.759 1.463 sum -13.381 2.361 7.348 15.448 Atomic orbital electron populations 1.21796 0.95285 1.01596 1.01339 1.21995 0.95185 0.99456 0.95226 0.90893 1.22494 0.95971 0.99649 0.97346 1.23174 0.97435 1.01230 0.97778 1.22257 0.91335 0.99291 0.89881 0.90490 1.60266 1.06152 1.05622 1.57426 1.21696 0.92272 0.95789 0.98511 1.19871 0.84425 0.86869 0.86159 1.90519 1.82235 1.22034 1.51979 1.41879 1.13460 1.17531 1.47333 1.19761 0.92048 1.03011 1.27958 0.87888 1.25260 0.99320 0.95373 0.98064 1.69625 1.30961 1.09203 1.44638 0.85800 0.80560 0.78955 0.79032 1.19216 1.20791 1.20754 1.22256 0.95848 0.99159 0.97680 0.93023 0.92747 0.92747 0.91588 0.91998 0.91802 0.91413 0.83084 0.89751 0.93977 0.77480 0.91965 0.90367 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.12 37.15 0.34 -0.87 16 2 C -0.10 -1.00 3.46 -88.97 -0.31 -1.31 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.12 -1.14 6.33 -24.74 -0.16 -1.29 16 5 C -0.16 -1.81 6.39 -25.07 -0.16 -1.97 16 6 C 0.08 1.09 3.23 -66.59 -0.21 0.87 16 7 H 0.08 0.99 7.83 -51.93 -0.41 0.58 16 8 N -0.66 -11.20 5.79 -106.80 -0.62 -11.82 16 9 C 0.05 0.92 5.99 -4.97 -0.03 0.89 16 10 C 0.44 10.72 7.82 -10.98 -0.09 10.64 16 11 O -0.58 -16.28 15.78 5.55 0.09 -16.19 16 12 N -0.57 -14.65 5.29 -10.96 -0.06 -14.71 16 13 C -0.30 -8.47 9.68 -14.94 -0.14 -8.62 16 14 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 15 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 17 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.11 -1.31 6.17 -25.61 -0.16 -1.47 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.44 8.11 -51.93 -0.42 0.02 16 25 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.83 7.58 -51.93 -0.39 0.44 16 29 H 0.35 6.12 7.84 -39.29 -0.31 5.81 16 30 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 31 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 33 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.08 1.04 7.92 -51.93 -0.41 0.63 16 35 H 0.06 0.70 7.81 -51.93 -0.41 0.29 16 LS Contribution 289.85 15.07 4.37 4.37 Total: -1.00 -30.64 289.85 -7.09 -37.73 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -5.55 Total: 11.16 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.01 Total: -2.66 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.05 Total: -50.69 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.09 Total: -16.19 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.64 -7.09 -37.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128943170.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.895 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds