Wall clock time and date at job start Mon Mar 30 2020 03:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.43115 * 2 1 4 4 C 1.54886 * 110.48671 * 122.53935 * 2 1 3 5 5 C 1.54894 * 102.74773 * 156.62516 * 4 2 1 6 6 C 1.54267 * 104.19333 * 322.05650 * 5 4 2 7 7 H 1.08999 * 110.03082 * 264.27630 * 6 5 4 8 8 N 1.46906 * 110.03103 * 142.89529 * 6 5 4 9 9 C 1.46901 * 110.99793 * 86.45542 * 8 6 5 10 10 C 1.50701 * 109.46921 * 179.97438 * 9 8 6 11 11 O 1.21294 * 119.99849 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99707 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99704 * 359.97438 * 13 12 10 15 15 C 1.38941 * 119.99927 * 180.02562 * 13 12 10 16 16 N 1.31417 * 120.00180 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00273 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46986 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47457 * 119.99901 * 17 15 13 20 20 H 1.48501 * 109.47104 * 239.99973 * 17 15 13 21 21 C 1.53873 * 106.59994 * 23.61448 * 6 5 4 22 22 H 1.08996 * 109.47450 * 298.91072 * 1 2 3 23 23 H 1.09004 * 109.47734 * 58.91603 * 1 2 3 24 24 H 1.09006 * 109.46859 * 178.91451 * 1 2 3 25 25 H 1.08994 * 110.75760 * 38.31214 * 4 2 1 26 26 H 1.09004 * 110.91494 * 275.00349 * 4 2 1 27 27 H 1.08995 * 110.48672 * 203.38342 * 5 4 2 28 28 H 1.08996 * 110.48671 * 80.73395 * 5 4 2 29 29 H 1.00899 * 110.99995 * 322.49940 * 8 6 5 30 30 H 1.09002 * 109.47401 * 59.99808 * 9 8 6 31 31 H 1.09001 * 109.46874 * 299.99821 * 9 8 6 32 32 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 33 33 H 0.97000 * 119.99884 * 180.02562 * 16 15 13 34 34 H 1.08996 * 110.03844 * 119.28559 * 21 6 5 35 35 H 1.09003 * 110.02721 * 240.71770 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9104 1.0214 0.0000 4 6 2.0720 -0.7804 1.2231 5 6 3.4907 -1.1969 0.7615 6 6 3.3165 -1.5413 -0.7321 7 1 3.1702 -2.6146 -0.8531 8 7 4.4975 -1.1063 -1.4899 9 6 5.5413 -2.1399 -1.4772 10 6 6.7339 -1.6592 -2.2631 11 8 6.7162 -0.5631 -2.7823 12 7 7.8204 -2.4467 -2.3881 13 6 8.9056 -2.0092 -3.1027 14 1 8.8895 -1.0335 -3.5657 15 6 10.0255 -2.8212 -3.2321 16 7 10.0449 -4.0086 -2.6692 17 14 11.5044 -2.2248 -4.2051 18 1 11.2329 -0.8640 -4.7339 19 1 12.6957 -2.1837 -3.3196 20 1 11.7600 -3.1529 -5.3358 21 6 2.0699 -0.7803 -1.2163 22 1 -0.3634 0.4968 0.8995 23 1 -0.3635 0.5306 -0.8801 24 1 -0.3633 -1.0276 -0.0195 25 1 1.4581 -1.6582 1.4243 26 1 2.1250 -0.1381 2.1022 27 1 3.8316 -2.0704 1.3171 28 1 4.1897 -0.3694 0.8832 29 1 4.8517 -0.2303 -1.1359 30 1 5.1536 -3.0534 -1.9282 31 1 5.8406 -2.3413 -0.4486 32 1 7.8346 -3.3231 -1.9726 33 1 10.8269 -4.5753 -2.7592 34 1 2.3411 -0.0882 -2.0135 35 1 1.3176 -1.4842 -1.5722 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128943170.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:36 Heat of formation + Delta-G solvation = -78.901923 kcal Electronic energy + Delta-G solvation = -15410.934375 eV Core-core repulsion = 12827.829292 eV Total energy + Delta-G solvation = -2583.105083 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.36082 -39.43727 -36.14262 -35.34505 -33.27558 -31.32591 -29.63347 -27.71907 -25.91151 -24.79049 -21.53229 -21.12141 -20.44567 -19.92375 -17.80524 -16.96086 -16.78060 -16.36058 -15.83415 -15.66553 -14.87217 -14.76730 -14.41913 -14.10711 -13.71455 -13.51327 -13.37243 -12.94936 -12.76170 -12.57529 -12.42154 -12.13180 -12.04885 -11.72018 -11.60516 -11.52645 -11.40114 -11.28895 -10.35503 -10.02852 -9.24879 -8.47803 -5.96895 1.36249 1.41484 1.56061 2.03411 2.28879 2.94635 3.19217 3.49946 3.74343 3.77734 3.99417 4.29620 4.37341 4.45194 4.50168 4.57265 4.60648 4.73329 4.75636 4.79548 4.97978 5.04861 5.09695 5.18553 5.29466 5.38793 5.39912 5.42907 5.59498 5.93240 6.18508 6.43676 6.59041 7.11329 7.54554 8.09986 8.69895 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.076966 B = 0.004475 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.707949 B = 6255.093509 C = 6421.536893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.065 0.935 4 C -0.110 4.110 5 C -0.155 4.155 6 C 0.081 3.919 7 H 0.084 0.916 8 N -0.678 5.678 9 C 0.066 3.934 10 C 0.436 3.564 11 O -0.625 6.625 12 N -0.573 5.573 13 C -0.335 4.335 14 H 0.078 0.922 15 C -0.013 4.013 16 N -0.920 5.920 17 Si 0.994 3.006 18 H -0.274 1.274 19 H -0.269 1.269 20 H -0.270 1.270 21 C -0.110 4.110 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.342 0.658 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.397 0.603 33 H 0.278 0.722 34 H 0.057 0.943 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.131 1.690 8.381 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.084 0.916 4 C -0.148 4.148 5 C -0.194 4.194 6 C -0.029 4.029 7 H 0.102 0.898 8 N -0.309 5.309 9 C -0.067 4.067 10 C 0.224 3.776 11 O -0.511 6.511 12 N -0.210 5.210 13 C -0.465 4.465 14 H 0.096 0.904 15 C -0.213 4.213 16 N -0.561 5.561 17 Si 0.818 3.182 18 H -0.198 1.198 19 H -0.195 1.195 20 H -0.195 1.195 21 C -0.148 4.148 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.161 0.839 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.230 0.770 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.247 2.061 7.416 17.079 hybrid contribution 1.355 -0.178 0.513 1.460 sum -13.892 1.883 7.928 16.105 Atomic orbital electron populations 1.21768 0.93821 1.02195 1.01900 1.21971 0.96372 0.98801 0.94500 0.91645 1.22477 0.94712 1.00207 0.97358 1.23120 0.98526 1.01149 0.96599 1.22392 0.90051 0.99802 0.90649 0.89796 1.60296 1.06592 1.05050 1.59002 1.21552 0.90176 0.96384 0.98562 1.20927 0.85295 0.85985 0.85390 1.90485 1.83178 1.23850 1.53618 1.41942 1.13634 1.17927 1.47498 1.19717 0.93966 1.02834 1.29962 0.90391 1.26058 1.01399 0.95322 0.98475 1.69681 1.31962 1.09716 1.44776 0.84853 0.77203 0.78204 0.77960 1.19832 1.19460 1.19529 1.22241 0.95587 0.99053 0.97911 0.91971 0.92772 0.92086 0.90342 0.91014 0.91122 0.92482 0.83869 0.88020 0.91779 0.76957 0.91249 0.92426 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.12 71.98 0.66 -1.38 16 2 C -0.10 -1.79 3.46 -9.72 -0.03 -1.83 16 3 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.11 -1.87 6.33 31.89 0.20 -1.66 16 5 C -0.15 -3.29 6.39 31.67 0.20 -3.08 16 6 C 0.08 2.00 3.23 45.64 0.15 2.15 16 7 H 0.08 1.97 7.83 -2.39 -0.02 1.95 16 8 N -0.68 -22.62 5.79 -491.81 -2.85 -25.47 16 9 C 0.07 2.35 5.99 85.56 0.51 2.87 16 10 C 0.44 21.51 7.82 87.66 0.69 22.19 16 11 O -0.62 -35.85 15.78 -3.07 -0.05 -35.90 16 12 N -0.57 -30.15 5.29 -306.98 -1.62 -31.78 16 13 C -0.34 -19.45 9.68 84.04 0.81 -18.63 16 14 H 0.08 4.84 7.16 -2.91 -0.02 4.81 16 15 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 16 N -0.92 -50.19 13.05 21.66 0.28 -49.91 16 17 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 C -0.11 -2.46 6.17 31.32 0.19 -2.26 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 24 H 0.06 0.82 8.11 -2.38 -0.02 0.80 16 25 H 0.08 1.17 8.06 -2.39 -0.02 1.15 16 26 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 1.34 7.58 -2.39 -0.02 1.32 16 29 H 0.34 12.13 7.84 -89.69 -0.70 11.42 16 30 H 0.10 3.32 8.07 -2.39 -0.02 3.30 16 31 H 0.06 2.03 8.10 -2.39 -0.02 2.02 16 32 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 33 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.06 1.53 7.92 -2.39 -0.02 1.51 16 35 H 0.07 1.50 7.81 -2.39 -0.02 1.49 16 Total: -1.00 -65.80 289.85 1.28 -64.52 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: -0.35 Total: 34.96 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 3.85 Total: -1.88 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -4.19 Total: -107.15 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.05 Total: -35.90 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -65.80 1.28 -64.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128943170.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.385 kcal (2) G-P(sol) polarization free energy of solvation -65.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds